Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00388 * 2 1 4 4 O 1.42898 * 109.47357 * 134.99500 * 3 2 1 5 5 C 1.42906 * 113.99824 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46752 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.03479 * 53.55229 * 6 5 4 8 8 C 1.54346 * 110.05507 * 292.04816 * 6 5 4 9 9 C 1.54916 * 104.20527 * 217.18730 * 8 6 5 10 10 C 1.54959 * 102.78452 * 37.77405 * 9 8 6 11 11 C 1.53561 * 110.05018 * 174.99956 * 6 5 4 12 12 C 1.52942 * 109.92549 * 238.31431 * 11 6 5 13 13 N 1.47236 * 108.36367 * 172.97100 * 12 11 6 14 14 S 1.65595 * 121.02042 * 130.03923 * 13 12 11 15 15 O 1.42095 * 106.40618 * 23.56168 * 14 13 12 16 16 O 1.42101 * 106.39997 * 156.48581 * 14 13 12 17 17 C 1.76205 * 107.22032 * 270.02299 * 14 13 12 18 18 H 1.08007 * 119.99612 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00197 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00066 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00121 * 0.02562 * 19 17 14 22 22 H 1.48503 * 109.47184 * 89.99759 * 21 19 17 23 23 H 1.48496 * 109.46874 * 209.99913 * 21 19 17 24 24 H 1.48505 * 109.46853 * 329.99583 * 21 19 17 25 25 C 1.47144 * 117.95686 * 310.06393 * 13 12 11 26 26 C 1.53294 * 108.49125 * 50.85218 * 25 13 12 27 27 O 1.42542 * 110.16068 * 359.97141 * 11 6 5 28 28 H 1.08005 * 120.00413 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99937 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99937 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.47126 * 14.99884 * 3 2 1 32 32 H 1.09002 * 109.47402 * 255.00115 * 3 2 1 33 33 H 1.08993 * 109.47732 * 60.00254 * 5 4 3 34 34 H 1.09000 * 109.47141 * 299.99893 * 5 4 3 35 35 H 1.09009 * 110.48646 * 335.86990 * 8 6 5 36 36 H 1.08997 * 110.48670 * 98.50471 * 8 6 5 37 37 H 1.09006 * 110.74769 * 279.45075 * 9 8 6 38 38 H 1.09001 * 110.91007 * 156.17163 * 9 8 6 39 39 H 1.08999 * 110.50328 * 203.65967 * 10 9 8 40 40 H 1.08998 * 110.49986 * 80.97004 * 10 9 8 41 41 H 1.09002 * 109.68684 * 292.68833 * 12 11 6 42 42 H 1.08997 * 109.68952 * 53.25138 * 12 11 6 43 43 H 0.97001 * 120.00287 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.63406 * 291.15384 * 25 13 12 45 45 H 1.09000 * 109.80222 * 170.64946 * 25 13 12 46 46 H 1.08995 * 109.51039 * 187.44211 * 26 25 13 47 47 H 1.09000 * 109.55039 * 67.31622 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9077 2.4353 1.0329 6 6 5.0106 2.2540 2.0778 7 1 5.5864 1.3543 1.8607 8 6 4.3925 2.1606 3.4890 9 6 5.3979 2.9142 4.3951 10 6 5.8516 4.0930 3.4974 11 6 5.9339 3.4809 2.0869 12 6 7.3728 3.0526 1.7946 13 7 8.1957 4.2641 1.6434 14 16 9.6213 4.4358 2.4684 15 8 10.0660 3.1224 2.7788 16 8 10.4018 5.3668 1.7313 17 6 9.2443 5.2097 4.0059 18 1 8.2237 5.4723 4.2423 19 6 10.2520 5.4790 4.9075 20 7 9.9707 6.0571 6.0547 21 14 12.0172 5.0242 4.4988 22 1 12.6732 6.1611 3.8043 23 1 12.7525 4.7190 5.7523 24 1 12.0289 3.8309 3.6149 25 6 7.7123 5.3179 0.7373 26 6 6.2588 5.6423 1.1005 27 8 5.4967 4.4321 1.1195 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2660 32 1 2.4755 1.4867 -0.9927 33 1 3.2678 3.2694 1.3204 34 1 4.3580 2.6407 0.0617 35 1 3.4181 2.6488 3.5118 36 1 4.3056 1.1193 3.7993 37 1 6.2433 2.2747 4.6492 38 1 4.9089 3.2818 5.2972 39 1 6.8290 4.4586 3.8124 40 1 5.1160 4.8969 3.5223 41 1 7.7522 2.4518 2.6211 42 1 7.4028 2.4711 0.8732 43 1 10.6797 6.2469 6.6889 44 1 7.7625 4.9661 -0.2933 45 1 8.3261 6.2116 0.8495 46 1 5.8417 6.3236 0.3590 47 1 6.2244 6.1097 2.0846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192957220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = -169.096755 kcal Electronic energy + Delta-G solvation = -30355.520404 eV Core-core repulsion = 26243.970623 eV Total energy + Delta-G solvation = -4111.549781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48382 -39.01352 -37.83433 -37.27486 -36.54508 -35.74800 -35.18166 -34.68697 -31.86447 -31.09283 -28.63631 -28.24737 -27.10207 -26.36970 -24.71916 -23.58987 -21.57398 -20.92263 -20.59642 -19.94904 -19.30655 -18.74710 -17.94736 -17.50629 -17.29163 -17.06370 -16.83449 -16.40011 -15.88981 -15.65297 -15.61866 -15.57040 -15.28709 -15.06856 -14.86683 -14.55090 -14.35210 -13.76681 -13.60027 -13.51957 -13.41848 -13.24961 -13.05635 -12.95353 -12.69347 -12.52772 -12.39528 -12.33058 -12.09656 -11.93895 -11.80185 -11.75913 -11.63401 -11.49852 -11.37356 -11.35111 -11.11999 -10.88861 -10.69279 -10.16336 -9.64241 -8.96517 -7.51420 0.02411 1.02340 1.10827 1.18555 1.29421 1.86624 2.31412 2.41511 2.69944 2.83653 3.34005 3.49767 3.63291 3.74419 3.86743 3.98657 4.04379 4.16302 4.21792 4.25601 4.31171 4.37202 4.42798 4.46224 4.48877 4.58115 4.60480 4.64474 4.65723 4.71356 4.74702 4.81504 4.93568 4.98628 5.04071 5.06705 5.10999 5.19664 5.26703 5.32710 5.40870 5.45686 5.69700 5.70485 5.78494 6.07327 6.22246 6.35912 6.54722 8.19921 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.003161 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.870497 B = 8854.700945 C = 9233.622672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.170 4.170 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.090 3.910 6 C -0.074 4.074 7 H 0.094 0.906 8 C -0.100 4.100 9 C -0.126 4.126 10 C -0.161 4.161 11 C 0.120 3.880 12 C 0.102 3.898 13 N -1.000 6.000 14 S 2.688 3.312 15 O -1.026 7.026 16 O -1.027 7.027 17 C -1.028 5.028 18 H 0.117 0.883 19 C 0.115 3.885 20 N -0.848 5.848 21 Si 0.816 3.184 22 H -0.241 1.241 23 H -0.221 1.221 24 H -0.232 1.232 25 C 0.082 3.918 26 C 0.048 3.952 27 O -0.365 6.365 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.290 0.710 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.139 0.861 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.148 -6.574 -10.329 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.009 3.991 4 O -0.322 6.322 5 C 0.014 3.986 6 C -0.093 4.093 7 H 0.112 0.888 8 C -0.137 4.137 9 C -0.163 4.163 10 C -0.199 4.199 11 C 0.078 3.922 12 C -0.024 4.024 13 N -0.839 5.839 14 S 2.790 3.210 15 O -1.016 7.016 16 O -1.017 7.017 17 C -1.161 5.161 18 H 0.135 0.865 19 C -0.102 4.102 20 N -0.479 5.479 21 Si 0.634 3.366 22 H -0.165 1.165 23 H -0.143 1.143 24 H -0.155 1.155 25 C -0.043 4.043 26 C -0.030 4.030 27 O -0.284 6.284 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.156 0.844 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.356 -6.962 -10.495 20.643 hybrid contribution 0.966 0.754 0.823 1.476 sum -15.390 -6.208 -9.672 19.208 Atomic orbital electron populations 1.24037 0.95180 1.03275 0.98427 1.22803 0.96192 0.97966 1.01812 1.21626 0.88731 0.96298 0.92438 1.87847 1.45274 1.37940 1.61138 1.22167 0.91761 0.86291 0.98352 1.21701 0.95273 0.95831 0.96461 0.88815 1.22330 0.98094 1.01130 0.92183 1.22476 0.99194 0.96417 0.98238 1.23113 1.02363 0.99334 0.95087 1.22075 0.92120 0.89625 0.88349 1.22169 0.90756 0.86172 1.03283 1.57482 1.40475 1.26669 1.59253 1.00865 0.71965 0.73160 0.74968 1.93420 1.80334 1.41710 1.86130 1.93364 1.68830 1.65221 1.74329 1.30979 1.04811 1.56688 1.23630 0.86512 1.25027 1.01416 0.90151 0.93584 1.69997 1.36167 1.34384 1.07311 0.87626 0.83055 0.82632 0.83320 1.16464 1.14309 1.15505 1.22250 0.97038 0.90790 0.94214 1.23094 0.89968 0.87017 1.02901 1.87826 1.55583 1.27158 1.57785 0.86568 0.87609 0.86931 0.92205 0.91949 0.92595 0.92516 0.90677 0.90173 0.91978 0.90560 0.92012 0.90302 0.89565 0.89380 0.89913 0.88980 0.89047 0.84385 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 14.31 67.79 0.97 -1.12 16 2 C -0.17 -2.66 9.89 25.65 0.25 -2.41 16 3 C 0.08 1.47 6.35 71.23 0.45 1.93 16 4 O -0.40 -8.98 10.18 -148.98 -1.52 -10.50 16 5 C 0.09 1.99 4.27 71.98 0.31 2.30 16 6 C -0.07 -1.79 2.84 -10.15 -0.03 -1.82 16 7 H 0.09 2.24 7.66 -2.39 -0.02 2.22 16 8 C -0.10 -2.32 6.23 31.71 0.20 -2.12 16 9 C -0.13 -3.49 6.91 31.92 0.22 -3.27 16 10 C -0.16 -5.10 4.71 31.59 0.15 -4.95 16 11 C 0.12 3.42 0.96 -10.30 -0.01 3.41 16 12 C 0.10 3.38 4.88 86.22 0.42 3.80 16 13 N -1.00 -38.17 2.87 -512.07 -1.47 -39.64 16 14 S 2.69 133.19 4.20 -56.49 -0.24 132.96 16 15 O -1.03 -54.59 14.84 -128.00 -1.90 -56.49 16 16 O -1.03 -54.06 15.64 -128.00 -2.00 -56.06 16 17 C -1.03 -56.07 9.79 67.73 0.66 -55.41 16 18 H 0.12 6.42 6.03 -2.91 -0.02 6.40 16 19 C 0.12 6.51 5.47 84.65 0.46 6.97 16 20 N -0.85 -48.06 13.96 21.44 0.30 -47.76 16 21 Si 0.82 40.80 26.54 68.60 1.82 42.62 16 22 H -0.24 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.22 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.23 -12.05 5.61 99.48 0.56 -11.49 16 25 C 0.08 2.53 6.56 86.35 0.57 3.09 16 26 C 0.05 1.23 6.71 72.08 0.48 1.72 16 27 O -0.37 -9.63 8.31 -148.98 -1.24 -10.87 16 28 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 29 H 0.11 1.08 7.90 -2.91 -0.02 1.06 16 30 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.06 0.92 7.86 -2.38 -0.02 0.91 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.21 7.91 -2.39 -0.02 1.19 16 34 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 35 H 0.07 1.63 7.76 -2.38 -0.02 1.61 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.41 4.80 -2.39 -0.01 2.40 16 40 H 0.08 2.34 7.70 -2.39 -0.02 2.32 16 41 H 0.09 3.11 7.25 -2.39 -0.02 3.09 16 42 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.29 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 45 H 0.09 2.97 7.25 -2.39 -0.02 2.95 16 46 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.05 1.44 6.89 -2.39 -0.02 1.43 16 Total: -1.00 -67.29 374.31 -0.33 -67.62 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.80 Total: 25.98 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 5.11 Total: -47.87 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.17 Total: -87.40 kcal Atomic # 8 Polarization: -127.26 SS G_CDS: -6.66 Total: -133.92 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.82 Total: 42.62 kcal Atomic # 16 Polarization: 133.19 SS G_CDS: -0.24 Total: 132.96 kcal Total: -67.29 -0.33 -67.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192957220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.474 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds