Wall clock time and date at job start Wed Apr 1 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99768 * 2 1 4 4 O 1.42898 * 109.47115 * 131.78273 * 3 2 1 5 5 C 1.42905 * 114.00140 * 184.80373 * 4 3 2 6 6 C 1.52998 * 109.47160 * 175.11314 * 5 4 3 7 7 H 1.09010 * 110.03462 * 299.13395 * 6 5 4 8 8 C 1.54347 * 110.05940 * 60.63931 * 6 5 4 9 9 C 1.54913 * 104.19880 * 142.84030 * 8 6 5 10 10 C 1.54959 * 102.79393 * 322.23095 * 9 8 6 11 11 C 1.53577 * 110.05555 * 177.69222 * 6 5 4 12 12 C 1.52932 * 109.88365 * 359.65522 * 11 6 5 13 13 N 1.47229 * 108.36605 * 70.14705 * 12 11 6 14 14 S 1.65597 * 121.02495 * 229.97415 * 13 12 11 15 15 O 1.42095 * 106.40596 * 14.96722 * 14 13 12 16 16 O 1.42103 * 106.39775 * 147.88959 * 14 13 12 17 17 C 1.76204 * 107.21648 * 261.42676 * 14 13 12 18 18 H 1.07991 * 120.00018 * 4.75449 * 17 14 13 19 19 C 1.37876 * 119.99759 * 184.75959 * 17 14 13 20 20 N 1.31511 * 120.00406 * 5.00667 * 19 17 14 21 21 Si 1.86804 * 119.99639 * 185.01321 * 19 17 14 22 22 H 1.48494 * 109.47061 * 5.00170 * 21 19 17 23 23 H 1.48500 * 109.46878 * 124.99771 * 21 19 17 24 24 H 1.48496 * 109.47020 * 244.99829 * 21 19 17 25 25 C 1.47165 * 117.94944 * 49.94734 * 13 12 11 26 26 C 1.53284 * 108.48914 * 309.14607 * 25 13 12 27 27 O 1.42543 * 110.09742 * 121.24362 * 11 6 5 28 28 H 1.08003 * 119.99510 * 174.98346 * 1 2 3 29 29 H 1.08001 * 120.00169 * 354.98655 * 1 2 3 30 30 H 1.08002 * 120.00115 * 179.72446 * 2 1 3 31 31 H 1.09005 * 109.47399 * 251.78125 * 3 2 1 32 32 H 1.09003 * 109.47487 * 11.78344 * 3 2 1 33 33 H 1.09000 * 109.46811 * 295.11283 * 5 4 3 34 34 H 1.08999 * 109.46815 * 55.10870 * 5 4 3 35 35 H 1.08999 * 110.48838 * 261.52406 * 8 6 5 36 36 H 1.09007 * 110.48193 * 24.16578 * 8 6 5 37 37 H 1.09001 * 110.74749 * 203.90197 * 9 8 6 38 38 H 1.09001 * 110.90107 * 80.63106 * 9 8 6 39 39 H 1.08996 * 110.49996 * 279.00466 * 10 9 8 40 40 H 1.08995 * 110.50169 * 156.32323 * 10 9 8 41 41 H 1.09000 * 109.68429 * 189.86567 * 12 11 6 42 42 H 1.09000 * 109.68585 * 310.38814 * 12 11 6 43 43 H 0.96994 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.63229 * 68.84426 * 25 13 12 45 45 H 1.08991 * 109.63284 * 189.44361 * 25 13 12 46 46 H 1.08996 * 109.50694 * 172.55348 * 26 25 13 47 47 H 1.09001 * 109.50865 * 292.64624 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.0790 1.2688 1.0046 5 6 3.7845 2.5015 1.1628 6 6 4.7566 2.3855 2.3386 7 1 4.2078 2.1810 3.2580 8 6 5.7801 1.2617 2.0705 9 6 7.1048 1.8054 2.6615 10 6 7.0466 3.3124 2.3050 11 6 5.5635 3.6840 2.4848 12 6 5.1461 4.6805 1.4024 13 7 3.7845 5.1514 1.7056 14 16 2.6001 5.1403 0.5483 15 8 3.0765 4.3147 -0.5056 16 8 1.3759 4.9021 1.2295 17 6 2.4956 6.7727 -0.1067 18 1 3.1971 7.5288 0.2132 19 6 1.5182 7.0846 -1.0278 20 7 0.6039 6.1936 -1.3437 21 14 1.4926 8.7728 -1.8270 22 1 2.6880 9.5420 -1.3973 23 1 1.5062 8.6214 -3.3042 24 1 0.2635 9.4970 -1.4148 25 6 3.5084 5.6317 3.0690 26 6 3.9942 4.5728 4.0651 27 8 5.3569 4.2461 3.7783 28 1 -0.5399 -0.9318 -0.0818 29 1 -0.5400 0.9317 0.0817 30 1 1.8500 -0.9353 0.0045 31 1 2.5234 1.4592 -0.9762 32 1 1.3739 2.1228 0.2099 33 1 4.3410 2.7210 0.2516 34 1 3.0736 3.3046 1.3568 35 1 5.4827 0.3453 2.5803 36 1 5.8833 1.0874 0.9995 37 1 7.9632 1.3293 2.1875 38 1 7.1352 1.6651 3.7420 39 1 7.3579 3.4727 1.2728 40 1 7.6703 3.8903 2.9870 41 1 5.8342 5.5259 1.3966 42 1 5.1576 4.1911 0.4286 43 1 -0.0839 6.4132 -1.9914 44 1 4.0390 6.5680 3.2419 45 1 2.4366 5.7865 3.1926 46 1 3.9197 4.9657 5.0791 47 1 3.3779 3.6784 3.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192957221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:02 Heat of formation + Delta-G solvation = -139.339937 kcal Electronic energy + Delta-G solvation = -31740.738334 eV Core-core repulsion = 27630.478905 eV Total energy + Delta-G solvation = -4110.259429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55129 -37.55859 -36.13169 -35.45330 -34.58735 -34.11080 -33.45381 -33.14652 -30.67647 -30.07597 -27.13642 -26.23257 -25.76107 -24.56331 -24.03816 -21.90903 -20.79806 -19.71790 -18.84119 -18.69125 -17.51892 -16.94451 -16.59874 -15.92565 -15.80267 -15.34756 -15.21300 -15.13090 -14.56898 -14.43065 -14.13622 -14.03463 -13.56179 -13.44071 -13.30995 -13.08776 -12.92092 -12.19380 -12.04775 -11.97386 -11.73987 -11.41553 -11.29466 -11.23780 -11.08504 -10.95574 -10.91810 -10.89603 -10.70286 -10.63492 -10.55122 -10.47577 -10.26864 -10.05784 -9.93308 -9.75441 -9.35370 -9.34443 -9.00407 -8.85868 -8.06809 -6.78689 -5.41787 2.08666 2.41955 2.99162 3.07837 3.15366 3.85675 3.97258 4.08592 4.33871 4.54485 4.65945 4.73265 4.86720 5.17981 5.26907 5.29843 5.35133 5.40486 5.43658 5.48163 5.52081 5.60548 5.68235 5.77612 5.80784 5.86264 5.89381 5.91977 5.95959 6.01007 6.06430 6.08587 6.08883 6.11513 6.20971 6.23387 6.28316 6.33371 6.36263 6.53045 6.69964 6.78843 6.96202 7.23341 7.37086 7.43391 7.62386 7.88713 8.80164 10.14077 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.005715 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.749895 B = 4898.196198 C = 6668.277711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.086 3.914 4 O -0.388 6.388 5 C 0.072 3.928 6 C -0.114 4.114 7 H 0.086 0.914 8 C -0.109 4.109 9 C -0.123 4.123 10 C -0.109 4.109 11 C 0.113 3.887 12 C 0.092 3.908 13 N -1.015 6.015 14 S 2.715 3.285 15 O -1.005 7.005 16 O -0.997 6.997 17 C -1.026 5.026 18 H 0.102 0.898 19 C 0.133 3.867 20 N -0.843 5.843 21 Si 0.918 3.082 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.269 1.269 25 C 0.091 3.909 26 C 0.045 3.955 27 O -0.367 6.367 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.291 0.709 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -6.484 6.311 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.164 4.164 3 C 0.010 3.990 4 O -0.308 6.308 5 C -0.005 4.005 6 C -0.133 4.133 7 H 0.104 0.896 8 C -0.146 4.146 9 C -0.161 4.161 10 C -0.147 4.147 11 C 0.072 3.928 12 C -0.034 4.034 13 N -0.850 5.850 14 S 2.818 3.182 15 O -0.996 6.996 16 O -0.987 6.987 17 C -1.159 5.159 18 H 0.120 0.880 19 C -0.085 4.085 20 N -0.473 5.473 21 Si 0.742 3.258 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.035 4.035 26 C -0.033 4.033 27 O -0.285 6.285 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.071 -7.429 6.215 12.608 hybrid contribution -0.412 1.907 -0.764 2.096 sum 7.659 -5.522 5.451 10.902 Atomic orbital electron populations 1.23898 0.95790 1.02197 1.00443 1.22790 0.95652 0.98033 0.99948 1.21615 0.89937 0.95384 0.92071 1.87714 1.50778 1.34243 1.58060 1.23304 0.93568 0.85454 0.98169 1.22347 0.96299 0.95514 0.99156 0.89623 1.22309 0.93530 0.97377 1.01415 1.22521 0.97638 0.94935 1.00967 1.22309 0.93277 0.96706 1.02376 1.22115 0.95350 0.91172 0.84205 1.22080 0.84311 0.97494 0.99502 1.58439 1.23592 1.79606 1.23392 1.00687 0.70433 0.75904 0.71212 1.93367 1.80992 1.69863 1.55379 1.93377 1.42814 1.87599 1.74891 1.30669 1.25291 1.21561 1.38395 0.87976 1.24755 0.91531 0.99311 0.92897 1.69910 1.12572 1.35449 1.29343 0.86160 0.79287 0.81318 0.79058 1.18516 1.19464 1.19439 1.21874 1.02427 0.96990 0.82202 1.22973 0.83568 0.98018 0.98695 1.87862 1.26311 1.81844 1.32529 0.88170 0.88027 0.87015 0.91462 0.92240 0.90131 0.95676 0.91352 0.91020 0.91364 0.91297 0.89830 0.90156 0.91311 0.87460 0.89893 0.91406 0.88349 0.88132 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 29.01 0.42 -2.33 16 2 C -0.15 -2.35 9.89 -36.03 -0.36 -2.70 16 3 C 0.09 1.70 6.34 36.00 0.23 1.92 16 4 O -0.39 -7.61 10.00 -35.23 -0.35 -7.96 16 5 C 0.07 1.40 2.59 37.16 0.10 1.50 16 6 C -0.11 -1.84 2.39 -89.62 -0.21 -2.05 16 7 H 0.09 1.42 6.43 -51.92 -0.33 1.08 16 8 C -0.11 -1.44 6.07 -25.02 -0.15 -1.59 16 9 C -0.12 -1.35 6.91 -24.69 -0.17 -1.52 16 10 C -0.11 -1.30 6.09 -25.20 -0.15 -1.46 16 11 C 0.11 1.72 0.97 -89.86 -0.09 1.63 16 12 C 0.09 1.60 4.73 -3.68 -0.02 1.59 16 13 N -1.02 -20.55 2.17 -113.21 -0.25 -20.80 16 14 S 2.72 69.93 3.21 -107.50 -0.34 69.59 16 15 O -1.01 -26.65 13.68 -57.17 -0.78 -27.43 16 16 O -1.00 -28.36 16.39 -57.17 -0.94 -29.30 16 17 C -1.03 -28.08 9.74 30.60 0.30 -27.79 16 18 H 0.10 2.61 7.82 -52.49 -0.41 2.20 16 19 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 20 N -0.84 -24.24 13.03 55.43 0.72 -23.52 16 21 Si 0.92 20.34 29.54 -169.99 -5.02 15.32 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.09 1.59 6.67 -3.53 -0.02 1.57 16 26 C 0.05 0.68 6.66 37.30 0.25 0.93 16 27 O -0.37 -5.64 10.16 -35.23 -0.36 -6.00 16 28 H 0.10 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.10 1.61 7.86 -52.49 -0.41 1.19 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.34 7.80 -51.93 -0.41 0.94 16 33 H 0.08 1.61 5.30 -51.93 -0.28 1.34 16 34 H 0.03 0.56 3.15 -27.44 -0.09 0.48 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.90 7.83 -51.93 -0.41 0.50 16 40 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.11 1.93 4.99 -51.93 -0.26 1.67 16 43 H 0.29 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.79 7.16 -51.93 -0.37 1.42 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -32.95 370.39 -8.78 -41.73 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.06 Total: 9.52 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 0.01 Total: -26.74 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.48 Total: -44.31 kcal Atomic # 8 Polarization: -68.26 SS G_CDS: -2.43 Total: -70.69 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 69.93 SS G_CDS: -0.34 Total: 69.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.95 -8.78 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192957221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.609 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds