Wall clock time and date at job start Wed Apr 1 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99768 * 2 1 4 4 O 1.42898 * 109.47115 * 131.78273 * 3 2 1 5 5 C 1.42905 * 114.00140 * 184.80373 * 4 3 2 6 6 C 1.52998 * 109.47160 * 175.11314 * 5 4 3 7 7 H 1.09010 * 110.03462 * 299.13395 * 6 5 4 8 8 C 1.54347 * 110.05940 * 60.63931 * 6 5 4 9 9 C 1.54913 * 104.19880 * 142.84030 * 8 6 5 10 10 C 1.54959 * 102.79393 * 322.23095 * 9 8 6 11 11 C 1.53577 * 110.05555 * 177.69222 * 6 5 4 12 12 C 1.52932 * 109.88365 * 359.65522 * 11 6 5 13 13 N 1.47229 * 108.36605 * 70.14705 * 12 11 6 14 14 S 1.65597 * 121.02495 * 229.97415 * 13 12 11 15 15 O 1.42095 * 106.40596 * 14.96722 * 14 13 12 16 16 O 1.42103 * 106.39775 * 147.88959 * 14 13 12 17 17 C 1.76204 * 107.21648 * 261.42676 * 14 13 12 18 18 H 1.07991 * 120.00018 * 4.75449 * 17 14 13 19 19 C 1.37876 * 119.99759 * 184.75959 * 17 14 13 20 20 N 1.31511 * 120.00406 * 5.00667 * 19 17 14 21 21 Si 1.86804 * 119.99639 * 185.01321 * 19 17 14 22 22 H 1.48494 * 109.47061 * 5.00170 * 21 19 17 23 23 H 1.48500 * 109.46878 * 124.99771 * 21 19 17 24 24 H 1.48496 * 109.47020 * 244.99829 * 21 19 17 25 25 C 1.47165 * 117.94944 * 49.94734 * 13 12 11 26 26 C 1.53284 * 108.48914 * 309.14607 * 25 13 12 27 27 O 1.42543 * 110.09742 * 121.24362 * 11 6 5 28 28 H 1.08003 * 119.99510 * 174.98346 * 1 2 3 29 29 H 1.08001 * 120.00169 * 354.98655 * 1 2 3 30 30 H 1.08002 * 120.00115 * 179.72446 * 2 1 3 31 31 H 1.09005 * 109.47399 * 251.78125 * 3 2 1 32 32 H 1.09003 * 109.47487 * 11.78344 * 3 2 1 33 33 H 1.09000 * 109.46811 * 295.11283 * 5 4 3 34 34 H 1.08999 * 109.46815 * 55.10870 * 5 4 3 35 35 H 1.08999 * 110.48838 * 261.52406 * 8 6 5 36 36 H 1.09007 * 110.48193 * 24.16578 * 8 6 5 37 37 H 1.09001 * 110.74749 * 203.90197 * 9 8 6 38 38 H 1.09001 * 110.90107 * 80.63106 * 9 8 6 39 39 H 1.08996 * 110.49996 * 279.00466 * 10 9 8 40 40 H 1.08995 * 110.50169 * 156.32323 * 10 9 8 41 41 H 1.09000 * 109.68429 * 189.86567 * 12 11 6 42 42 H 1.09000 * 109.68585 * 310.38814 * 12 11 6 43 43 H 0.96994 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.63229 * 68.84426 * 25 13 12 45 45 H 1.08991 * 109.63284 * 189.44361 * 25 13 12 46 46 H 1.08996 * 109.50694 * 172.55348 * 26 25 13 47 47 H 1.09001 * 109.50865 * 292.64624 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.0790 1.2688 1.0046 5 6 3.7845 2.5015 1.1628 6 6 4.7566 2.3855 2.3386 7 1 4.2078 2.1810 3.2580 8 6 5.7801 1.2617 2.0705 9 6 7.1048 1.8054 2.6615 10 6 7.0466 3.3124 2.3050 11 6 5.5635 3.6840 2.4848 12 6 5.1461 4.6805 1.4024 13 7 3.7845 5.1514 1.7056 14 16 2.6001 5.1403 0.5483 15 8 3.0765 4.3147 -0.5056 16 8 1.3759 4.9021 1.2295 17 6 2.4956 6.7727 -0.1067 18 1 3.1971 7.5288 0.2132 19 6 1.5182 7.0846 -1.0278 20 7 0.6039 6.1936 -1.3437 21 14 1.4926 8.7728 -1.8270 22 1 2.6880 9.5420 -1.3973 23 1 1.5062 8.6214 -3.3042 24 1 0.2635 9.4970 -1.4148 25 6 3.5084 5.6317 3.0690 26 6 3.9942 4.5728 4.0651 27 8 5.3569 4.2461 3.7783 28 1 -0.5399 -0.9318 -0.0818 29 1 -0.5400 0.9317 0.0817 30 1 1.8500 -0.9353 0.0045 31 1 2.5234 1.4592 -0.9762 32 1 1.3739 2.1228 0.2099 33 1 4.3410 2.7210 0.2516 34 1 3.0736 3.3046 1.3568 35 1 5.4827 0.3453 2.5803 36 1 5.8833 1.0874 0.9995 37 1 7.9632 1.3293 2.1875 38 1 7.1352 1.6651 3.7420 39 1 7.3579 3.4727 1.2728 40 1 7.6703 3.8903 2.9870 41 1 5.8342 5.5259 1.3966 42 1 5.1576 4.1911 0.4286 43 1 -0.0839 6.4132 -1.9914 44 1 4.0390 6.5680 3.2419 45 1 2.4366 5.7865 3.1926 46 1 3.9197 4.9657 5.0791 47 1 3.3779 3.6784 3.9750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192957221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:01 Heat of formation + Delta-G solvation = -163.483106 kcal Electronic energy + Delta-G solvation = -31741.785260 eV Core-core repulsion = 27630.478905 eV Total energy + Delta-G solvation = -4111.306355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83343 -39.08052 -37.61310 -37.24730 -36.36343 -35.88870 -35.20245 -34.78788 -31.92451 -31.32724 -28.51449 -28.25822 -27.18373 -25.91547 -25.42465 -23.31545 -21.83333 -21.04724 -20.79873 -20.13615 -19.04230 -18.64432 -18.21596 -17.52932 -17.34335 -16.96618 -16.78647 -16.59463 -16.01133 -15.89267 -15.76164 -15.30706 -15.26813 -14.86440 -14.68256 -14.38051 -14.17217 -14.01277 -13.50718 -13.48083 -13.34926 -13.09323 -13.02016 -12.79942 -12.62099 -12.42257 -12.39275 -12.31562 -12.23045 -12.11090 -11.98438 -11.89260 -11.64445 -11.43773 -11.33689 -11.28449 -11.24111 -10.91731 -10.75909 -10.38018 -9.59536 -8.82236 -7.58349 0.17337 1.13834 1.25519 1.27041 1.44762 2.12940 2.47556 2.56859 2.64377 2.74864 3.42890 3.52222 3.57594 3.73330 3.89025 3.91472 3.99514 4.06591 4.08304 4.17984 4.18900 4.30124 4.35620 4.41218 4.43946 4.46808 4.52459 4.56508 4.62059 4.67460 4.72834 4.77801 4.87049 4.88673 4.91300 5.04565 5.11482 5.14292 5.22433 5.26133 5.32724 5.48755 5.49793 5.70536 5.75812 5.79860 6.03203 6.19581 6.69125 8.11560 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.005715 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.749895 B = 4898.196198 C = 6668.277711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.160 4.160 3 C 0.086 3.914 4 O -0.386 6.386 5 C 0.069 3.931 6 C -0.114 4.114 7 H 0.078 0.922 8 C -0.107 4.107 9 C -0.111 4.111 10 C -0.105 4.105 11 C 0.114 3.886 12 C 0.083 3.917 13 N -1.014 6.014 14 S 2.723 3.277 15 O -1.026 7.026 16 O -1.038 7.038 17 C -1.054 5.054 18 H 0.113 0.887 19 C 0.072 3.928 20 N -0.889 5.889 21 Si 0.985 3.015 22 H -0.248 1.248 23 H -0.256 1.256 24 H -0.255 1.255 25 C 0.081 3.919 26 C 0.050 3.950 27 O -0.361 6.361 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.069 0.931 34 H -0.003 1.003 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.299 0.701 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.140 0.860 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.826 -6.509 7.268 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C 0.009 3.991 4 O -0.306 6.306 5 C -0.008 4.008 6 C -0.133 4.133 7 H 0.097 0.903 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.143 4.143 11 C 0.072 3.928 12 C -0.042 4.042 13 N -0.852 5.852 14 S 2.826 3.174 15 O -1.017 7.017 16 O -1.028 7.028 17 C -1.187 5.187 18 H 0.131 0.869 19 C -0.142 4.142 20 N -0.520 5.520 21 Si 0.803 3.197 22 H -0.171 1.171 23 H -0.180 1.180 24 H -0.179 1.179 25 C -0.044 4.044 26 C -0.028 4.028 27 O -0.279 6.279 28 H 0.160 0.840 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.158 0.842 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.332 -7.464 7.181 14.630 hybrid contribution -1.147 1.896 -1.026 2.442 sum 9.185 -5.568 6.155 12.379 Atomic orbital electron populations 1.24141 0.95420 1.03140 0.98168 1.22814 0.96038 0.97022 1.01943 1.21601 0.89477 0.96455 0.91541 1.87712 1.50577 1.34312 1.57962 1.23339 0.93432 0.84618 0.99368 1.22403 0.96282 0.97615 0.96970 0.90346 1.22317 0.94059 0.96545 1.01541 1.22497 0.96904 0.93924 1.01523 1.22396 0.90580 0.97640 1.03678 1.22249 0.97417 0.89740 0.83361 1.22384 0.82869 0.98895 1.00037 1.57982 1.23842 1.79945 1.23449 1.00124 0.70547 0.75365 0.71338 1.93320 1.81284 1.70233 1.56831 1.93308 1.45778 1.87984 1.75718 1.31112 1.25820 1.22777 1.38982 0.86898 1.26008 0.90806 1.04040 0.93323 1.70001 1.13629 1.37966 1.30419 0.85177 0.80276 0.75721 0.78547 1.17128 1.18009 1.17919 1.22174 1.02011 0.99024 0.81212 1.23041 0.83281 0.96701 0.99757 1.87879 1.26094 1.81609 1.32314 0.84009 0.90135 0.84006 0.92632 0.96524 0.91274 0.98521 0.90771 0.91429 0.88695 0.90511 0.88663 0.88490 0.89227 0.88815 0.89071 0.89066 0.90104 0.84228 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 14.32 67.78 0.97 -4.07 16 2 C -0.16 -5.21 9.89 25.64 0.25 -4.95 16 3 C 0.09 3.62 6.34 71.24 0.45 4.07 16 4 O -0.39 -15.89 10.00 -148.98 -1.49 -17.38 16 5 C 0.07 2.84 2.59 71.98 0.19 3.03 16 6 C -0.11 -3.64 2.39 -10.14 -0.02 -3.66 16 7 H 0.08 2.60 6.43 -2.38 -0.02 2.59 16 8 C -0.11 -2.66 6.07 31.71 0.19 -2.46 16 9 C -0.11 -2.05 6.91 31.92 0.22 -1.83 16 10 C -0.11 -2.18 6.09 31.58 0.19 -1.99 16 11 C 0.11 3.30 0.97 -10.30 -0.01 3.29 16 12 C 0.08 2.88 4.73 86.22 0.41 3.29 16 13 N -1.01 -42.17 2.17 -512.09 -1.11 -43.28 16 14 S 2.72 148.08 3.21 -56.49 -0.18 147.90 16 15 O -1.03 -58.06 13.68 -128.00 -1.75 -59.81 16 16 O -1.04 -63.31 16.39 -128.00 -2.10 -65.41 16 17 C -1.05 -59.50 9.74 67.73 0.66 -58.84 16 18 H 0.11 5.87 7.82 -2.92 -0.02 5.84 16 19 C 0.07 4.03 5.46 84.65 0.46 4.49 16 20 N -0.89 -53.29 13.03 21.45 0.28 -53.01 16 21 Si 0.99 41.58 29.54 68.60 2.03 43.60 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 C 0.08 2.84 6.67 86.35 0.58 3.41 16 26 C 0.05 1.45 6.66 72.08 0.48 1.93 16 27 O -0.36 -10.26 10.16 -148.98 -1.51 -11.78 16 28 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.08 2.69 7.86 -2.91 -0.02 2.67 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.02 0.82 7.80 -2.39 -0.02 0.81 16 33 H 0.07 2.95 5.30 -2.39 -0.01 2.94 16 34 H 0.00 -0.14 3.15 -17.96 -0.06 -0.20 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.73 7.86 -2.38 -0.02 1.71 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.77 7.83 -2.39 -0.02 1.75 16 40 H 0.10 1.75 8.06 -2.39 -0.02 1.73 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.09 3.49 4.99 -2.39 -0.01 3.48 16 43 H 0.30 16.04 8.31 -92.71 -0.77 15.26 16 44 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.08 3.08 7.16 -2.39 -0.02 3.06 16 46 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.04 1.38 6.36 -2.39 -0.02 1.36 16 Total: -1.00 -76.80 370.39 0.09 -76.70 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.92 Total: 36.75 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 5.02 Total: -54.29 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -0.83 Total: -96.29 kcal Atomic # 8 Polarization: -147.53 SS G_CDS: -6.85 Total: -154.38 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 148.08 SS G_CDS: -0.18 Total: 147.90 kcal Total: -76.80 0.09 -76.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192957221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.779 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds