Wall clock time and date at job start Wed Apr 1 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20788 * 120.00057 * 2 1 4 4 C 1.48998 * 120.00069 * 179.97438 * 2 1 3 5 5 O 1.21291 * 119.99831 * 359.97438 * 4 2 1 6 6 O 1.34612 * 120.00554 * 180.02562 * 4 2 1 7 7 C 1.35667 * 117.00604 * 174.94437 * 6 4 2 8 8 C 1.38712 * 120.14467 * 266.82650 * 7 6 4 9 9 C 1.38081 * 120.07504 * 179.76543 * 8 7 6 10 10 C 1.38528 * 120.38585 * 0.51028 * 9 8 7 11 11 C 1.37833 * 120.30050 * 359.74603 * 10 9 8 12 12 C 1.39660 * 119.90847 * 359.97438 * 11 10 9 13 13 C 1.47589 * 120.18528 * 179.97438 * 12 11 10 14 14 O 1.21576 * 119.99809 * 180.02562 * 13 12 11 15 15 N 1.34774 * 119.99993 * 0.02562 * 13 12 11 16 16 C 1.46496 * 119.99746 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.41637 * 324.85279 * 16 15 13 18 18 C 1.52956 * 109.42037 * 84.64179 * 16 15 13 19 19 C 1.53225 * 109.40848 * 183.70375 * 18 16 15 20 20 C 1.51276 * 108.53560 * 305.37178 * 19 18 16 21 21 C 1.37879 * 120.85124 * 231.32670 * 20 19 18 22 22 N 1.31512 * 120.00068 * 180.02562 * 21 20 19 23 23 Si 1.86803 * 119.99869 * 0.02562 * 21 20 19 24 24 H 1.48504 * 109.46753 * 90.00314 * 23 21 20 25 25 H 1.48494 * 109.47097 * 210.00174 * 23 21 20 26 26 H 1.48496 * 109.47123 * 330.00254 * 23 21 20 27 27 C 1.51273 * 118.29806 * 51.34886 * 20 19 18 28 28 C 1.52961 * 109.41357 * 204.99592 * 16 15 13 29 29 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46782 * 59.99650 * 1 2 3 31 31 H 1.08996 * 109.46570 * 300.00011 * 1 2 3 32 32 H 1.07995 * 119.96072 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.80424 * 180.23461 * 9 8 7 34 34 H 1.07998 * 119.84736 * 179.76297 * 10 9 8 35 35 H 1.08000 * 120.04078 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00234 * 359.97438 * 15 13 12 37 37 H 1.09000 * 109.48238 * 303.68845 * 18 16 15 38 38 H 1.09004 * 109.48131 * 63.72394 * 18 16 15 39 39 H 1.09002 * 109.62911 * 185.65891 * 19 18 16 40 40 H 1.08997 * 109.78605 * 65.18179 * 19 18 16 41 41 H 0.96994 * 119.99794 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.62405 * 188.93398 * 27 20 19 43 43 H 1.08997 * 109.78454 * 68.46073 * 27 20 19 44 44 H 1.09004 * 109.48387 * 296.27848 * 28 16 15 45 45 H 1.09009 * 109.48073 * 56.29681 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0460 0.0000 4 6 2.2520 -1.2903 0.0006 5 8 1.6455 -2.3407 0.0015 6 8 3.5981 -1.2905 0.0011 7 6 4.2140 -2.4945 0.1081 8 6 4.5890 -2.9769 1.3534 9 6 5.2114 -4.2048 1.4612 10 6 5.4754 -4.9583 0.3291 11 6 5.1144 -4.4917 -0.9166 12 6 4.4790 -3.2541 -1.0394 13 6 4.0902 -2.7484 -2.3703 14 8 3.5377 -1.6703 -2.4734 15 7 4.3478 -3.4816 -3.4715 16 6 3.9624 -2.9793 -4.7925 17 1 3.0272 -2.4252 -4.7109 18 6 5.0566 -2.0514 -5.3229 19 6 4.6125 -1.4538 -6.6621 20 6 4.2483 -2.5861 -7.5968 21 6 4.7842 -2.6559 -8.8653 22 7 4.4555 -3.6474 -9.6643 23 14 5.9770 -1.3421 -9.4489 24 1 7.3647 -1.7475 -9.1094 25 1 5.8544 -1.1805 -10.9199 26 1 5.6601 -0.0541 -8.7813 27 6 3.2807 -3.6395 -7.1044 28 6 3.7732 -4.1577 -5.7492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 0.5138 0.8900 32 1 4.3901 -2.3934 2.2401 33 1 5.4981 -4.5779 2.4334 34 1 5.9661 -5.9157 0.4231 35 1 5.3226 -5.0824 -1.7964 36 1 4.7889 -4.3415 -3.3893 37 1 5.2313 -1.2487 -4.6066 38 1 5.9767 -2.6184 -5.4651 39 1 5.4280 -0.8722 -7.0919 40 1 3.7453 -0.8113 -6.5099 41 1 4.8322 -3.6963 -10.5568 42 1 3.2405 -4.4621 -7.8184 43 1 2.2878 -3.2043 -6.9911 44 1 4.7236 -4.6750 -5.8813 45 1 3.0383 -4.8480 -5.3348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193406827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:47 Heat of formation + Delta-G solvation = -119.399596 kcal Electronic energy + Delta-G solvation = -30426.106307 eV Core-core repulsion = 26181.267605 eV Total energy + Delta-G solvation = -4244.838702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76463 -40.11080 -39.24330 -38.41809 -37.07871 -36.68221 -33.83077 -32.12818 -31.00278 -30.85814 -30.60278 -29.68256 -27.31421 -26.01150 -24.18916 -22.85855 -22.12411 -21.53077 -20.60610 -20.19550 -19.58592 -18.61260 -17.97363 -17.52245 -16.97500 -16.13115 -15.95712 -15.80167 -15.24835 -15.19202 -14.97059 -14.69124 -14.43222 -14.27463 -14.14767 -13.63289 -13.20940 -12.85360 -12.80409 -12.68987 -12.60375 -12.45442 -12.25548 -12.13598 -12.05478 -11.95575 -11.70184 -11.20154 -11.04553 -10.83820 -10.73911 -10.25128 -10.17698 -10.00783 -9.77396 -9.58651 -9.39220 -9.13549 -9.02749 -8.87166 -8.48356 -8.35230 -6.12170 -4.02771 0.43196 0.54031 0.78127 2.12750 2.49371 2.84172 3.26069 3.35608 3.37178 3.39289 3.61520 3.94640 4.36901 4.38000 4.42274 4.51929 4.64616 4.96637 4.98181 4.98869 5.01349 5.16200 5.18723 5.41687 5.51789 5.68564 5.80378 5.83903 5.89903 6.00222 6.03498 6.16523 6.35134 6.42550 6.45548 6.62282 6.68466 6.72587 6.87105 6.93516 7.08285 7.20495 7.42564 7.45875 7.62645 7.68494 7.71976 7.85984 8.36174 8.42431 8.94245 9.53198 10.97367 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.003100 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.210647 B = 9029.684297 C =10255.688138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.382 3.618 3 O -0.390 6.390 4 C 0.437 3.563 5 O -0.461 6.461 6 O -0.258 6.258 7 C 0.129 3.871 8 C -0.128 4.128 9 C -0.085 4.085 10 C -0.119 4.119 11 C -0.075 4.075 12 C -0.128 4.128 13 C 0.551 3.449 14 O -0.533 6.533 15 N -0.714 5.714 16 C 0.155 3.845 17 H 0.079 0.921 18 C -0.114 4.114 19 C -0.013 4.013 20 C -0.489 4.489 21 C 0.077 3.923 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.014 3.986 28 C -0.114 4.114 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.393 0.607 37 H 0.037 0.963 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.019 0.981 41 H 0.264 0.736 42 H 0.061 0.939 43 H 0.006 0.994 44 H 0.055 0.945 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -1.816 23.813 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.251 3.749 3 O -0.258 6.258 4 C 0.278 3.722 5 O -0.346 6.346 6 O -0.172 6.172 7 C 0.087 3.913 8 C -0.147 4.147 9 C -0.103 4.103 10 C -0.137 4.137 11 C -0.094 4.094 12 C -0.132 4.132 13 C 0.337 3.663 14 O -0.411 6.411 15 N -0.364 5.364 16 C 0.052 3.948 17 H 0.097 0.903 18 C -0.153 4.153 19 C -0.051 4.051 20 C -0.508 4.508 21 C -0.126 4.126 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.191 1.191 27 C -0.024 4.024 28 C -0.153 4.153 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.228 0.772 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.157 -0.877 23.489 23.604 hybrid contribution 1.133 -0.069 -0.413 1.208 sum -1.024 -0.946 23.076 23.118 Atomic orbital electron populations 1.22118 0.89039 1.06903 1.06008 1.24078 0.92487 0.85494 0.72877 1.90507 1.71458 1.33440 1.30399 1.24895 0.81201 0.92734 0.73388 1.90809 1.68601 1.33563 1.41585 1.84681 1.20576 1.29832 1.82073 1.18562 0.95637 0.84703 0.92441 1.21236 1.00825 0.96683 0.95911 1.21192 0.96600 0.93186 0.99356 1.21224 1.00007 1.00532 0.91982 1.21325 0.95676 0.93658 0.98701 1.20448 1.03110 0.95720 0.93895 1.17992 0.79602 0.84860 0.83807 1.90761 1.42417 1.21112 1.86787 1.46340 1.60559 1.22303 1.07185 1.21113 0.98604 0.96318 0.78736 0.90294 1.21912 0.97489 0.97491 0.98364 1.19711 0.96640 0.96178 0.92576 1.20042 1.25860 1.07499 0.97404 1.24832 0.96220 0.95486 0.96058 1.69828 1.43940 1.30833 1.08192 0.86659 0.81452 0.82851 0.77433 1.20429 1.21615 1.19139 1.19328 0.94569 0.97440 0.91077 1.21942 1.00212 0.95137 0.97964 0.88215 0.87046 0.87367 0.84544 0.84564 0.84584 0.84497 0.77239 0.94382 0.92985 0.95050 0.96231 0.92577 0.92034 0.97551 0.92646 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 10.29 36.01 0.37 -1.02 16 2 C 0.38 4.68 7.31 -29.85 -0.22 4.46 16 3 O -0.39 -5.72 17.69 -7.65 -0.14 -5.86 16 4 C 0.44 6.45 6.66 35.19 0.23 6.68 16 5 O -0.46 -7.19 15.90 -19.10 -0.30 -7.49 16 6 O -0.26 -4.11 8.48 -33.24 -0.28 -4.39 16 7 C 0.13 1.84 4.94 -38.69 -0.19 1.65 16 8 C -0.13 -1.34 9.98 -39.46 -0.39 -1.73 16 9 C -0.09 -0.68 10.03 -39.53 -0.40 -1.08 16 10 C -0.12 -0.98 10.02 -39.62 -0.40 -1.37 16 11 C -0.07 -0.79 9.54 -39.20 -0.37 -1.17 16 12 C -0.13 -1.86 5.89 -104.84 -0.62 -2.47 16 13 C 0.55 9.78 7.72 -12.45 -0.10 9.69 16 14 O -0.53 -11.24 13.85 -16.57 -0.23 -11.47 16 15 N -0.71 -11.85 5.02 -54.88 -0.28 -12.13 16 16 C 0.15 3.09 2.35 -67.97 -0.16 2.93 16 17 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 18 C -0.11 -2.44 5.50 -26.64 -0.15 -2.59 16 19 C -0.01 -0.31 5.59 -27.48 -0.15 -0.46 16 20 C -0.49 -12.86 5.51 -98.92 -0.55 -13.40 16 21 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 22 N -0.89 -25.35 12.73 55.43 0.71 -24.65 16 23 Si 0.89 21.27 27.27 -169.99 -4.64 16.63 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.28 6.46 56.52 0.37 -5.92 16 27 C 0.01 0.34 5.97 -27.49 -0.16 0.17 16 28 C -0.11 -2.32 5.40 -26.64 -0.14 -2.47 16 29 H 0.10 0.74 7.26 -51.93 -0.38 0.36 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 1.15 6.40 -52.49 -0.34 0.82 16 36 H 0.39 5.23 6.63 -40.82 -0.27 4.96 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -34.22 377.14 -8.78 -43.00 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.81 Total: 0.87 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.49 Total: -0.19 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.43 Total: -36.78 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.95 Total: -29.21 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.64 Total: 16.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.22 -8.78 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193406827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.401 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds