Wall clock time and date at job start Wed Apr 1 2020 03:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20788 * 120.00057 * 2 1 4 4 C 1.48998 * 120.00069 * 179.97438 * 2 1 3 5 5 O 1.21291 * 119.99831 * 359.97438 * 4 2 1 6 6 O 1.34612 * 120.00554 * 180.02562 * 4 2 1 7 7 C 1.35667 * 117.00604 * 174.94437 * 6 4 2 8 8 C 1.38712 * 120.14467 * 266.82650 * 7 6 4 9 9 C 1.38081 * 120.07504 * 179.76543 * 8 7 6 10 10 C 1.38528 * 120.38585 * 0.51028 * 9 8 7 11 11 C 1.37833 * 120.30050 * 359.74603 * 10 9 8 12 12 C 1.39660 * 119.90847 * 359.97438 * 11 10 9 13 13 C 1.47589 * 120.18528 * 179.97438 * 12 11 10 14 14 O 1.21576 * 119.99809 * 180.02562 * 13 12 11 15 15 N 1.34774 * 119.99993 * 0.02562 * 13 12 11 16 16 C 1.46496 * 119.99746 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.41637 * 324.85279 * 16 15 13 18 18 C 1.52956 * 109.42037 * 84.64179 * 16 15 13 19 19 C 1.53225 * 109.40848 * 183.70375 * 18 16 15 20 20 C 1.51276 * 108.53560 * 305.37178 * 19 18 16 21 21 C 1.37879 * 120.85124 * 231.32670 * 20 19 18 22 22 N 1.31512 * 120.00068 * 180.02562 * 21 20 19 23 23 Si 1.86803 * 119.99869 * 0.02562 * 21 20 19 24 24 H 1.48504 * 109.46753 * 90.00314 * 23 21 20 25 25 H 1.48494 * 109.47097 * 210.00174 * 23 21 20 26 26 H 1.48496 * 109.47123 * 330.00254 * 23 21 20 27 27 C 1.51273 * 118.29806 * 51.34886 * 20 19 18 28 28 C 1.52961 * 109.41357 * 204.99592 * 16 15 13 29 29 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46782 * 59.99650 * 1 2 3 31 31 H 1.08996 * 109.46570 * 300.00011 * 1 2 3 32 32 H 1.07995 * 119.96072 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.80424 * 180.23461 * 9 8 7 34 34 H 1.07998 * 119.84736 * 179.76297 * 10 9 8 35 35 H 1.08000 * 120.04078 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00234 * 359.97438 * 15 13 12 37 37 H 1.09000 * 109.48238 * 303.68845 * 18 16 15 38 38 H 1.09004 * 109.48131 * 63.72394 * 18 16 15 39 39 H 1.09002 * 109.62911 * 185.65891 * 19 18 16 40 40 H 1.08997 * 109.78605 * 65.18179 * 19 18 16 41 41 H 0.96994 * 119.99794 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.62405 * 188.93398 * 27 20 19 43 43 H 1.08997 * 109.78454 * 68.46073 * 27 20 19 44 44 H 1.09004 * 109.48387 * 296.27848 * 28 16 15 45 45 H 1.09009 * 109.48073 * 56.29681 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0460 0.0000 4 6 2.2520 -1.2903 0.0006 5 8 1.6455 -2.3407 0.0015 6 8 3.5981 -1.2905 0.0011 7 6 4.2140 -2.4945 0.1081 8 6 4.5890 -2.9769 1.3534 9 6 5.2114 -4.2048 1.4612 10 6 5.4754 -4.9583 0.3291 11 6 5.1144 -4.4917 -0.9166 12 6 4.4790 -3.2541 -1.0394 13 6 4.0902 -2.7484 -2.3703 14 8 3.5377 -1.6703 -2.4734 15 7 4.3478 -3.4816 -3.4715 16 6 3.9624 -2.9793 -4.7925 17 1 3.0272 -2.4252 -4.7109 18 6 5.0566 -2.0514 -5.3229 19 6 4.6125 -1.4538 -6.6621 20 6 4.2483 -2.5861 -7.5968 21 6 4.7842 -2.6559 -8.8653 22 7 4.4555 -3.6474 -9.6643 23 14 5.9770 -1.3421 -9.4489 24 1 7.3647 -1.7475 -9.1094 25 1 5.8544 -1.1805 -10.9199 26 1 5.6601 -0.0541 -8.7813 27 6 3.2807 -3.6395 -7.1044 28 6 3.7732 -4.1577 -5.7492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 0.5138 0.8900 32 1 4.3901 -2.3934 2.2401 33 1 5.4981 -4.5779 2.4334 34 1 5.9661 -5.9157 0.4231 35 1 5.3226 -5.0824 -1.7964 36 1 4.7889 -4.3415 -3.3893 37 1 5.2313 -1.2487 -4.6066 38 1 5.9767 -2.6184 -5.4651 39 1 5.4280 -0.8722 -7.0919 40 1 3.7453 -0.8113 -6.5099 41 1 4.8322 -3.6963 -10.5568 42 1 3.2405 -4.4621 -7.8184 43 1 2.2878 -3.2043 -6.9911 44 1 4.7236 -4.6750 -5.8813 45 1 3.0383 -4.8480 -5.3348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193406827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:46 Heat of formation + Delta-G solvation = -139.616501 kcal Electronic energy + Delta-G solvation = -30426.982977 eV Core-core repulsion = 26181.267605 eV Total energy + Delta-G solvation = -4245.715373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79555 -41.25149 -40.43181 -39.45321 -38.36715 -38.09801 -35.49945 -33.72585 -32.24022 -31.68167 -31.52438 -31.38051 -29.06725 -26.99285 -25.30211 -24.04324 -23.53539 -23.26125 -21.79003 -21.48389 -21.17782 -19.69504 -19.04471 -18.64678 -18.07003 -17.85310 -17.23699 -16.78743 -16.44796 -16.29775 -16.20058 -16.07597 -15.82440 -15.27490 -15.13296 -15.11593 -14.70996 -14.57437 -14.19906 -13.96713 -13.66516 -13.49415 -13.42983 -13.31389 -13.23164 -13.06690 -12.87145 -12.84283 -12.72300 -12.59633 -12.16861 -11.95480 -11.85039 -11.55068 -11.25385 -11.17709 -10.86304 -10.72063 -10.56543 -10.25367 -10.01636 -9.87517 -8.20205 -6.14453 -0.52381 -0.42648 0.00963 1.22653 1.35634 1.40201 1.48372 1.48622 1.75202 2.05363 2.38705 2.64835 3.02493 3.07866 3.53515 3.56250 3.64786 3.96908 3.98000 4.13018 4.21618 4.23879 4.35094 4.40372 4.42094 4.48195 4.64595 4.70764 4.77605 4.90477 4.91434 5.00319 5.01985 5.07747 5.08303 5.16429 5.18118 5.19002 5.29029 5.49337 5.50828 5.55846 5.61567 5.72247 5.76764 5.77790 6.31574 6.42753 6.48038 6.90339 7.11781 7.43960 8.90355 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.003100 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.210647 B = 9029.684297 C =10255.688138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.385 3.615 3 O -0.423 6.423 4 C 0.427 3.573 5 O -0.477 6.477 6 O -0.279 6.279 7 C 0.092 3.908 8 C -0.134 4.134 9 C -0.067 4.067 10 C -0.109 4.109 11 C -0.074 4.074 12 C -0.162 4.162 13 C 0.546 3.454 14 O -0.577 6.577 15 N -0.703 5.703 16 C 0.167 3.833 17 H 0.053 0.947 18 C -0.105 4.105 19 C -0.014 4.014 20 C -0.501 4.501 21 C 0.029 3.971 22 N -0.925 5.925 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.263 1.263 27 C 0.010 3.990 28 C -0.099 4.099 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.411 0.589 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.009 0.991 41 H 0.265 0.735 42 H 0.037 0.963 43 H -0.005 1.005 44 H 0.062 0.938 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -3.334 26.539 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.256 3.744 3 O -0.293 6.293 4 C 0.268 3.732 5 O -0.363 6.363 6 O -0.193 6.193 7 C 0.050 3.950 8 C -0.152 4.152 9 C -0.085 4.085 10 C -0.126 4.126 11 C -0.093 4.093 12 C -0.165 4.165 13 C 0.335 3.665 14 O -0.458 6.458 15 N -0.354 5.354 16 C 0.063 3.937 17 H 0.071 0.929 18 C -0.144 4.144 19 C -0.052 4.052 20 C -0.520 4.520 21 C -0.170 4.170 22 N -0.565 5.565 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.188 1.188 27 C -0.028 4.028 28 C -0.138 4.138 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.171 0.829 33 H 0.197 0.803 34 H 0.196 0.804 35 H 0.174 0.826 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.959 -2.429 26.238 26.368 hybrid contribution 0.751 0.325 -1.160 1.420 sum -0.208 -2.104 25.078 25.167 Atomic orbital electron populations 1.22251 0.85082 1.07738 1.08031 1.24806 0.94140 0.84097 0.71351 1.90491 1.72368 1.33987 1.32480 1.25589 0.81185 0.93609 0.72772 1.90764 1.68775 1.34251 1.42511 1.84675 1.21203 1.31367 1.82023 1.19096 0.97035 0.84841 0.94020 1.21564 1.00755 0.97929 0.94965 1.21763 0.93815 0.91512 1.01385 1.21739 0.98428 1.01741 0.90697 1.21639 0.94671 0.92094 1.00874 1.20317 1.06416 0.97976 0.91833 1.18600 0.78540 0.84236 0.85148 1.90727 1.44400 1.23114 1.87575 1.46012 1.60659 1.23034 1.05710 1.20679 0.96989 0.95648 0.80347 0.92909 1.21779 0.98175 0.97692 0.96765 1.19705 0.96310 0.95557 0.93673 1.20532 1.25507 1.08148 0.97779 1.25512 0.97945 0.97177 0.96334 1.69937 1.45432 1.32533 1.08567 0.85856 0.80002 0.80846 0.76918 1.19494 1.21543 1.18761 1.19284 0.94084 0.96466 0.92982 1.21705 1.00995 0.95411 0.95663 0.87974 0.85863 0.83968 0.82889 0.80280 0.80444 0.82596 0.75086 0.94731 0.92164 0.94936 0.97247 0.92598 0.94412 0.98624 0.91922 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 10.29 71.24 0.73 -1.76 16 2 C 0.39 9.72 7.31 28.58 0.21 9.93 16 3 O -0.42 -12.93 17.69 11.50 0.20 -12.73 16 4 C 0.43 13.08 6.66 70.71 0.47 13.55 16 5 O -0.48 -15.26 15.90 20.51 0.33 -14.93 16 6 O -0.28 -9.26 8.48 13.03 0.11 -9.15 16 7 C 0.09 2.61 4.94 22.85 0.11 2.73 16 8 C -0.13 -2.52 9.98 22.35 0.22 -2.29 16 9 C -0.07 -0.77 10.03 22.30 0.22 -0.55 16 10 C -0.11 -1.26 10.02 22.24 0.22 -1.04 16 11 C -0.07 -1.36 9.54 22.52 0.21 -1.15 16 12 C -0.16 -4.59 5.89 -20.00 -0.12 -4.71 16 13 C 0.55 19.60 7.72 86.71 0.67 20.27 16 14 O -0.58 -25.39 13.85 16.96 0.23 -25.16 16 15 N -0.70 -22.89 5.02 -445.79 -2.24 -25.13 16 16 C 0.17 6.69 2.35 44.96 0.11 6.79 16 17 H 0.05 2.41 7.58 -2.39 -0.02 2.39 16 18 C -0.11 -4.51 5.50 30.65 0.17 -4.34 16 19 C -0.01 -0.70 5.59 30.11 0.17 -0.53 16 20 C -0.50 -26.64 5.51 -16.17 -0.09 -26.73 16 21 C 0.03 1.61 5.46 84.66 0.46 2.07 16 22 N -0.93 -53.60 12.73 21.45 0.27 -53.33 16 23 Si 0.94 43.74 27.27 68.60 1.87 45.61 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.26 -11.99 6.46 99.48 0.64 -11.35 16 27 C 0.01 0.49 5.97 30.10 0.18 0.67 16 28 C -0.10 -3.99 5.40 30.66 0.17 -3.82 16 29 H 0.10 1.44 7.26 -2.39 -0.02 1.42 16 30 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.16 2.10 6.40 -2.91 -0.02 2.08 16 36 H 0.41 10.16 6.63 -92.71 -0.61 9.55 16 37 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.03 1.54 4.78 -2.39 -0.01 1.53 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.04 2.05 7.07 -2.39 -0.02 2.03 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -79.07 377.14 5.26 -73.80 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.36 Total: 11.91 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 4.12 Total: 9.10 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.97 Total: -78.46 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: 0.88 Total: -61.96 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.87 Total: 45.61 kcal Total: -79.07 5.26 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193406827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.816 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds