Wall clock time and date at job start Wed Apr 1 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35753 * 116.99652 * 2 1 4 4 C 1.39368 * 119.73032 * 359.97357 * 3 2 1 5 5 C 1.36460 * 120.42992 * 179.97438 * 4 3 2 6 6 C 1.39967 * 119.79362 * 359.77280 * 5 4 3 7 7 C 1.46439 * 120.98593 * 179.66609 * 6 5 4 8 8 C 1.50698 * 120.90257 * 0.58425 * 7 6 5 9 9 O 1.42904 * 109.47024 * 179.71669 * 8 7 6 10 10 C 1.42905 * 113.99884 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88634 * 32.42923 * 10 9 8 12 12 C 1.55157 * 111.00247 * 156.34977 * 10 9 8 13 13 C 1.54332 * 103.01782 * 153.38381 * 12 10 9 14 14 N 1.47025 * 107.26803 * 338.13617 * 13 12 10 15 15 C 1.36929 * 125.65197 * 178.84694 * 14 13 12 16 16 H 1.08000 * 120.00572 * 185.74444 * 15 14 13 17 17 C 1.38817 * 119.99830 * 5.74989 * 15 14 13 18 18 N 1.31617 * 120.00197 * 353.14454 * 17 15 14 19 19 Si 1.86801 * 120.00033 * 173.14827 * 17 15 14 20 20 H 1.48495 * 109.46982 * 275.00832 * 19 17 15 21 21 H 1.48499 * 109.47145 * 35.00837 * 19 17 15 22 22 H 1.48496 * 109.46922 * 155.00839 * 19 17 15 23 23 C 1.47427 * 108.70136 * 358.59062 * 14 13 12 24 24 C 1.35852 * 118.19530 * 180.30538 * 7 6 5 25 25 C 1.41007 * 119.82216 * 0.25842 * 24 7 6 26 26 O 1.21794 * 119.15509 * 179.97438 * 25 24 7 27 27 O 1.34230 * 121.68645 * 0.02562 * 25 24 7 28 28 C 1.35021 * 121.46623 * 359.97438 * 27 25 24 29 29 C 1.38509 * 119.72660 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47237 * 300.00212 * 1 2 3 32 32 H 1.08999 * 109.46754 * 60.00196 * 1 2 3 33 33 H 1.08005 * 119.78283 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.10054 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.47171 * 59.71938 * 8 7 6 36 36 H 1.09002 * 109.47146 * 299.71621 * 8 7 6 37 37 H 1.09004 * 110.71819 * 271.94078 * 12 10 9 38 38 H 1.08996 * 110.71822 * 35.03755 * 12 10 9 39 39 H 1.08999 * 109.99120 * 218.66789 * 13 12 10 40 40 H 1.09000 * 109.78485 * 97.49778 * 13 12 10 41 41 H 0.96992 * 120.00787 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.36594 * 143.19126 * 23 14 13 43 43 H 1.08994 * 110.36939 * 265.51450 * 23 14 13 44 44 H 1.07994 * 120.08679 * 180.27497 * 24 7 6 45 45 H 1.08000 * 120.10511 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2807 2.3748 -0.0006 5 6 1.8852 3.5982 0.0000 6 6 3.2823 3.6836 0.0059 7 6 3.9582 4.9826 -0.0007 8 6 3.1685 6.2660 -0.0009 9 8 4.0663 7.3778 -0.0013 10 6 3.4158 8.6502 -0.0021 11 1 2.4734 8.6052 0.5438 12 6 4.3440 9.7496 0.5786 13 6 3.8285 11.0351 -0.1024 14 7 3.1171 10.6273 -1.3228 15 6 2.4901 11.4707 -2.2006 16 1 1.9150 11.0666 -3.0205 17 6 2.5937 12.8453 -2.0367 18 7 3.1789 13.3381 -0.9656 19 14 1.9026 13.9956 -3.3361 20 1 2.9093 14.1908 -4.4102 21 1 0.6694 13.4046 -3.9150 22 1 1.5798 15.3058 -2.7161 23 6 3.1960 9.1605 -1.4482 24 6 5.3166 4.9993 -0.0009 25 6 6.0329 3.7847 -0.0002 26 8 7.2505 3.8138 -0.0008 27 8 5.4071 2.5972 0.0000 28 6 4.0597 2.5105 0.0001 29 6 3.4288 1.2756 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2026 2.3091 -0.0006 34 1 1.2875 4.4977 -0.0001 35 1 2.5406 6.3064 0.8892 36 1 2.5403 6.3060 -0.8909 37 1 4.2353 9.8138 1.6613 38 1 5.3825 9.5604 0.3072 39 1 4.6669 11.6819 -0.3608 40 1 3.1461 11.5590 0.5670 41 1 3.2517 14.2984 -0.8512 42 1 2.2650 8.7638 -1.8531 43 1 4.0368 8.8786 -2.0818 44 1 5.8465 5.9403 -0.0012 45 1 4.0144 0.3681 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205826078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:20 Heat of formation + Delta-G solvation = -74.505915 kcal Electronic energy + Delta-G solvation = -29240.123670 eV Core-core repulsion = 24997.231704 eV Total energy + Delta-G solvation = -4242.891966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17056 -40.40355 -38.76124 -38.33185 -37.14025 -36.28187 -34.49414 -32.19733 -31.53614 -29.82337 -29.36436 -28.23217 -27.72655 -26.83379 -24.42385 -24.26646 -23.68946 -22.13549 -20.52820 -20.16586 -19.93491 -18.57489 -17.92994 -17.31499 -17.01884 -16.96524 -16.38174 -16.28798 -16.16931 -15.49807 -15.32592 -14.81490 -14.62640 -14.37890 -14.27961 -14.04570 -13.69875 -13.64029 -13.32588 -12.84021 -12.66420 -12.51372 -12.41724 -12.19769 -12.03464 -11.90554 -11.64342 -11.54078 -11.14943 -10.97609 -10.79385 -10.46680 -10.28190 -10.19022 -10.12391 -9.88644 -9.76476 -9.30091 -9.27191 -8.62760 -8.41897 -6.89313 -5.77461 -3.10872 -0.02920 0.59711 1.20269 1.94477 2.57341 2.82091 3.30920 3.32882 3.37553 3.43191 3.44219 3.89818 4.00799 4.25934 4.27088 4.40363 4.47707 4.56631 4.59817 4.74773 4.92517 4.98254 5.01526 5.10171 5.25774 5.32120 5.35082 5.39289 5.44058 5.52211 5.64229 5.66069 5.69660 5.73317 5.86052 6.01410 6.19819 6.36705 6.46131 6.58798 6.62062 6.67370 6.96660 7.29003 7.38839 7.48854 7.57146 7.76701 8.19890 9.15773 9.76119 10.41553 11.34617 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002206 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.441723 B =12692.128010 C =14040.738343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.181 3.819 4 C -0.224 4.224 5 C -0.016 4.016 6 C -0.179 4.179 7 C 0.028 3.972 8 C 0.093 3.907 9 O -0.373 6.373 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.137 4.137 13 C 0.178 3.822 14 N -0.604 5.604 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.287 1.287 21 H -0.282 1.282 22 H -0.290 1.290 23 C 0.117 3.883 24 C -0.233 4.233 25 C 0.512 3.488 26 O -0.461 6.461 27 O -0.273 6.273 28 C 0.190 3.810 29 C -0.174 4.174 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.254 0.746 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.176 0.824 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 -26.012 5.076 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.134 3.866 4 C -0.243 4.243 5 C -0.034 4.034 6 C -0.180 4.180 7 C 0.027 3.973 8 C 0.016 3.984 9 O -0.292 6.292 10 C 0.015 3.985 11 H 0.088 0.912 12 C -0.175 4.175 13 C 0.053 3.947 14 N -0.331 5.331 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.214 1.214 21 H -0.207 1.207 22 H -0.217 1.217 23 C -0.010 4.010 24 C -0.252 4.252 25 C 0.362 3.638 26 O -0.349 6.349 27 O -0.185 6.185 28 C 0.144 3.856 29 C -0.193 4.193 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.193 0.807 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.237 -26.137 5.060 27.343 hybrid contribution -0.911 0.963 -0.695 1.497 sum -7.147 -25.175 4.364 26.531 Atomic orbital electron populations 1.23206 0.77305 1.04627 1.01963 1.86068 1.22203 1.26273 1.87538 1.18727 0.91088 0.84609 0.92182 1.21039 1.00957 0.91789 1.10515 1.20718 0.92020 0.98254 0.92362 1.18799 0.94407 0.91343 1.13501 1.21262 0.93999 0.92761 0.89273 1.21245 0.91594 0.83644 1.01897 1.87868 1.32591 1.13529 1.95192 1.23512 0.95743 0.81175 0.98110 0.91201 1.22990 0.99325 0.95628 0.99592 1.21190 0.96091 0.90332 0.87087 1.44338 1.63593 0.99591 1.25625 1.19021 1.24723 0.86969 1.05288 0.90405 1.24840 1.00768 0.96684 0.97974 1.69951 1.48552 1.11654 1.26502 0.86143 0.78385 0.80314 0.80941 1.21439 1.20743 1.21667 1.21934 0.98450 0.86759 0.93809 1.22440 0.94584 0.99009 1.09149 1.19314 0.87813 0.81352 0.75369 1.90992 1.12204 1.85211 1.46481 1.83539 1.19487 1.37819 1.77696 1.18456 0.79418 0.93036 0.94676 1.19424 0.91607 0.96489 1.11827 0.87694 0.92038 0.92000 0.84090 0.83840 0.90479 0.90234 0.91675 0.91275 0.93195 0.93584 0.93596 0.94488 0.95301 0.80675 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.80 101.05 0.99 1.06 16 2 O -0.31 -2.11 10.48 -18.97 -0.20 -2.30 16 3 C 0.18 1.38 6.69 -39.06 -0.26 1.12 16 4 C -0.22 -1.41 8.96 -39.80 -0.36 -1.77 16 5 C -0.02 -0.11 9.46 -39.58 -0.37 -0.49 16 6 C -0.18 -1.76 5.87 -105.01 -0.62 -2.38 16 7 C 0.03 0.31 6.08 -102.18 -0.62 -0.31 16 8 C 0.09 1.01 5.05 36.00 0.18 1.19 16 9 O -0.37 -5.49 8.70 -35.23 -0.31 -5.80 16 10 C 0.07 1.22 3.49 -24.58 -0.09 1.13 16 11 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 12 C -0.14 -2.53 6.68 -24.89 -0.17 -2.70 16 13 C 0.18 4.24 5.38 -3.06 -0.02 4.22 16 14 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 15 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 18 N -0.92 -26.68 10.36 55.49 0.57 -26.10 16 19 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.12 2.37 6.97 -2.53 -0.02 2.35 16 24 C -0.23 -3.05 9.30 -39.39 -0.37 -3.42 16 25 C 0.51 7.41 7.89 31.78 0.25 7.66 16 26 O -0.46 -8.07 17.91 -19.60 -0.35 -8.42 16 27 O -0.27 -3.56 9.82 -20.80 -0.20 -3.76 16 28 C 0.19 2.03 6.76 -38.48 -0.26 1.77 16 29 C -0.17 -1.56 9.93 -39.32 -0.39 -1.95 16 30 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.13 7.64 -51.93 -0.40 -0.27 16 32 H 0.06 0.13 7.64 -51.93 -0.40 -0.26 16 33 H 0.14 0.51 6.24 -52.48 -0.33 0.18 16 34 H 0.14 0.72 7.26 -52.49 -0.38 0.34 16 35 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.33 7.39 -51.93 -0.38 0.94 16 40 H 0.05 1.19 7.53 -51.93 -0.39 0.80 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.18 2.44 7.04 -52.49 -0.37 2.07 16 45 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -33.47 375.40 -8.77 -42.25 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.98 Total: -3.19 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.36 Total: 0.69 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.00 Total: -41.89 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.06 Total: -20.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.47 -8.77 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205826078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.257 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds