Wall clock time and date at job start Wed Apr 1 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35753 * 116.99652 * 2 1 4 4 C 1.39368 * 119.73032 * 359.97357 * 3 2 1 5 5 C 1.36460 * 120.42992 * 179.97438 * 4 3 2 6 6 C 1.39967 * 119.79362 * 359.77280 * 5 4 3 7 7 C 1.46439 * 120.98593 * 179.66609 * 6 5 4 8 8 C 1.50698 * 120.90257 * 0.58425 * 7 6 5 9 9 O 1.42904 * 109.47024 * 179.71669 * 8 7 6 10 10 C 1.42905 * 113.99884 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.88634 * 32.42923 * 10 9 8 12 12 C 1.55157 * 111.00247 * 156.34977 * 10 9 8 13 13 C 1.54332 * 103.01782 * 153.38381 * 12 10 9 14 14 N 1.47025 * 107.26803 * 338.13617 * 13 12 10 15 15 C 1.36929 * 125.65197 * 178.84694 * 14 13 12 16 16 H 1.08000 * 120.00572 * 185.74444 * 15 14 13 17 17 C 1.38817 * 119.99830 * 5.74989 * 15 14 13 18 18 N 1.31617 * 120.00197 * 353.14454 * 17 15 14 19 19 Si 1.86801 * 120.00033 * 173.14827 * 17 15 14 20 20 H 1.48495 * 109.46982 * 275.00832 * 19 17 15 21 21 H 1.48499 * 109.47145 * 35.00837 * 19 17 15 22 22 H 1.48496 * 109.46922 * 155.00839 * 19 17 15 23 23 C 1.47427 * 108.70136 * 358.59062 * 14 13 12 24 24 C 1.35852 * 118.19530 * 180.30538 * 7 6 5 25 25 C 1.41007 * 119.82216 * 0.25842 * 24 7 6 26 26 O 1.21794 * 119.15509 * 179.97438 * 25 24 7 27 27 O 1.34230 * 121.68645 * 0.02562 * 25 24 7 28 28 C 1.35021 * 121.46623 * 359.97438 * 27 25 24 29 29 C 1.38509 * 119.72660 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47237 * 300.00212 * 1 2 3 32 32 H 1.08999 * 109.46754 * 60.00196 * 1 2 3 33 33 H 1.08005 * 119.78283 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.10054 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.47171 * 59.71938 * 8 7 6 36 36 H 1.09002 * 109.47146 * 299.71621 * 8 7 6 37 37 H 1.09004 * 110.71819 * 271.94078 * 12 10 9 38 38 H 1.08996 * 110.71822 * 35.03755 * 12 10 9 39 39 H 1.08999 * 109.99120 * 218.66789 * 13 12 10 40 40 H 1.09000 * 109.78485 * 97.49778 * 13 12 10 41 41 H 0.96992 * 120.00787 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.36594 * 143.19126 * 23 14 13 43 43 H 1.08994 * 110.36939 * 265.51450 * 23 14 13 44 44 H 1.07994 * 120.08679 * 180.27497 * 24 7 6 45 45 H 1.08000 * 120.10511 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2807 2.3748 -0.0006 5 6 1.8852 3.5982 0.0000 6 6 3.2823 3.6836 0.0059 7 6 3.9582 4.9826 -0.0007 8 6 3.1685 6.2660 -0.0009 9 8 4.0663 7.3778 -0.0013 10 6 3.4158 8.6502 -0.0021 11 1 2.4734 8.6052 0.5438 12 6 4.3440 9.7496 0.5786 13 6 3.8285 11.0351 -0.1024 14 7 3.1171 10.6273 -1.3228 15 6 2.4901 11.4707 -2.2006 16 1 1.9150 11.0666 -3.0205 17 6 2.5937 12.8453 -2.0367 18 7 3.1789 13.3381 -0.9656 19 14 1.9026 13.9956 -3.3361 20 1 2.9093 14.1908 -4.4102 21 1 0.6694 13.4046 -3.9150 22 1 1.5798 15.3058 -2.7161 23 6 3.1960 9.1605 -1.4482 24 6 5.3166 4.9993 -0.0009 25 6 6.0329 3.7847 -0.0002 26 8 7.2505 3.8138 -0.0008 27 8 5.4071 2.5972 0.0000 28 6 4.0597 2.5105 0.0001 29 6 3.4288 1.2756 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2026 2.3091 -0.0006 34 1 1.2875 4.4977 -0.0001 35 1 2.5406 6.3064 0.8892 36 1 2.5403 6.3060 -0.8909 37 1 4.2353 9.8138 1.6613 38 1 5.3825 9.5604 0.3072 39 1 4.6669 11.6819 -0.3608 40 1 3.1461 11.5590 0.5670 41 1 3.2517 14.2984 -0.8512 42 1 2.2650 8.7638 -1.8531 43 1 4.0368 8.8786 -2.0818 44 1 5.8465 5.9403 -0.0012 45 1 4.0144 0.3681 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205826078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:19 Heat of formation + Delta-G solvation = -94.453131 kcal Electronic energy + Delta-G solvation = -29240.988646 eV Core-core repulsion = 24997.231704 eV Total energy + Delta-G solvation = -4243.756942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.05720 -41.01407 -40.02831 -39.26261 -38.21803 -37.49304 -35.53631 -34.06516 -32.16841 -31.14132 -30.53167 -29.30487 -28.57432 -27.95671 -26.24464 -25.12021 -24.38401 -22.99561 -22.05753 -21.84232 -20.68644 -19.37758 -18.95248 -18.75328 -18.01627 -17.98005 -17.54848 -16.90204 -16.71449 -16.68306 -16.45410 -16.25943 -15.85975 -15.58025 -15.17958 -15.03238 -14.72579 -14.52350 -14.39144 -14.16759 -13.96771 -13.72326 -13.38907 -13.24414 -13.03395 -12.97781 -12.89916 -12.78573 -12.47973 -12.12761 -12.08963 -12.05391 -12.02250 -11.75691 -11.44398 -11.42416 -11.02409 -10.69473 -10.42813 -9.96861 -9.15608 -8.90858 -7.86419 -5.21688 -0.84353 -0.09496 0.43842 1.12095 1.46963 1.50215 1.57427 1.70623 2.21081 2.36309 2.52308 2.57271 3.05400 3.29289 3.32889 3.38425 3.68100 3.76967 3.82362 3.86042 4.05046 4.10612 4.17253 4.22817 4.28195 4.40238 4.40404 4.46632 4.54358 4.62206 4.69186 4.75250 4.80201 4.84584 4.93890 4.98673 5.04426 5.05835 5.10232 5.22011 5.28150 5.45987 5.64768 5.73713 6.02374 6.15114 6.20774 6.27125 6.30058 7.08938 7.75953 8.40255 9.24487 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002206 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.441723 B =12692.128010 C =14040.738343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.190 3.810 4 C -0.213 4.213 5 C -0.004 4.004 6 C -0.195 4.195 7 C 0.061 3.939 8 C 0.083 3.917 9 O -0.384 6.384 10 C 0.097 3.903 11 H 0.096 0.904 12 C -0.128 4.128 13 C 0.185 3.815 14 N -0.626 5.626 15 C -0.243 4.243 16 H 0.086 0.914 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.289 1.289 21 H -0.265 1.265 22 H -0.295 1.295 23 C 0.111 3.889 24 C -0.270 4.270 25 C 0.513 3.487 26 O -0.514 6.514 27 O -0.284 6.284 28 C 0.167 3.833 29 C -0.189 4.189 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.008 0.992 40 H 0.019 0.981 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.161 0.839 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 -27.809 5.039 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.142 3.858 4 C -0.231 4.231 5 C -0.022 4.022 6 C -0.196 4.196 7 C 0.060 3.940 8 C 0.008 3.992 9 O -0.303 6.303 10 C 0.038 3.962 11 H 0.114 0.886 12 C -0.166 4.166 13 C 0.060 3.940 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.104 0.896 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.216 1.216 21 H -0.190 1.190 22 H -0.221 1.221 23 C -0.014 4.014 24 C -0.289 4.289 25 C 0.366 3.634 26 O -0.406 6.406 27 O -0.196 6.196 28 C 0.123 3.877 29 C -0.209 4.209 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.178 0.822 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.416 -28.000 5.014 30.292 hybrid contribution 0.141 1.280 -0.706 1.469 sum -10.275 -26.720 4.309 28.949 Atomic orbital electron populations 1.23568 0.75044 1.06298 1.03344 1.86074 1.24519 1.25962 1.86927 1.18855 0.90618 0.85686 0.90610 1.21433 1.02634 0.90658 1.08378 1.21095 0.90625 0.99946 0.90532 1.18875 0.95659 0.89988 1.15083 1.21422 0.93109 0.93817 0.85617 1.21655 0.91301 0.81658 1.04630 1.87873 1.33662 1.13553 1.95179 1.23124 0.96034 0.81608 0.95400 0.88643 1.22813 0.99398 0.93753 1.00648 1.20917 0.93938 0.92348 0.86802 1.44648 1.63269 1.01803 1.25634 1.19445 1.24382 0.87709 1.05692 0.89646 1.25696 1.01868 0.98372 0.99958 1.70169 1.50161 1.11326 1.28213 0.85108 0.78132 0.77945 0.78236 1.21587 1.18977 1.22138 1.22130 0.98831 0.84146 0.96332 1.22140 0.95577 0.97707 1.13481 1.19443 0.87423 0.81992 0.74526 1.90943 1.14041 1.85977 1.49665 1.83466 1.21283 1.37267 1.77626 1.18817 0.78388 0.94374 0.96141 1.19538 0.92719 0.95949 1.12653 0.86192 0.90496 0.90602 0.80522 0.80618 0.86837 0.87859 0.89096 0.91530 0.97381 0.96314 0.94312 0.92591 0.96412 0.82171 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.80 113.37 1.11 1.13 16 2 O -0.32 -3.40 10.48 -90.78 -0.95 -4.35 16 3 C 0.19 2.31 6.69 22.61 0.15 2.46 16 4 C -0.21 -1.62 8.96 22.13 0.20 -1.42 16 5 C 0.00 -0.04 9.46 22.27 0.21 0.17 16 6 C -0.20 -3.34 5.87 -20.11 -0.12 -3.46 16 7 C 0.06 1.25 6.08 -18.28 -0.11 1.14 16 8 C 0.08 1.45 5.05 71.24 0.36 1.81 16 9 O -0.38 -10.26 8.70 -148.98 -1.30 -11.56 16 10 C 0.10 2.97 3.49 31.99 0.11 3.08 16 11 H 0.10 2.51 7.90 -2.39 -0.02 2.49 16 12 C -0.13 -4.60 6.68 31.79 0.21 -4.39 16 13 C 0.19 9.00 5.38 86.73 0.47 9.47 16 14 N -0.63 -31.48 3.39 -691.97 -2.35 -33.83 16 15 C -0.24 -13.37 10.26 84.04 0.86 -12.51 16 16 H 0.09 4.43 7.84 -2.91 -0.02 4.40 16 17 C -0.07 -3.70 5.48 84.86 0.47 -3.24 16 18 N -0.95 -56.72 10.36 21.65 0.22 -56.49 16 19 Si 0.98 45.02 29.56 68.60 2.03 47.05 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 C 0.11 4.30 6.97 86.86 0.61 4.91 16 24 C -0.27 -7.27 9.30 22.39 0.21 -7.06 16 25 C 0.51 15.94 7.89 68.50 0.54 16.48 16 26 O -0.51 -19.67 17.91 18.97 0.34 -19.33 16 27 O -0.28 -7.82 9.82 14.65 0.14 -7.68 16 28 C 0.17 3.50 6.76 22.98 0.16 3.65 16 29 C -0.19 -3.19 9.93 22.44 0.22 -2.97 16 30 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.08 -0.06 7.64 -2.39 -0.02 -0.08 16 32 H 0.08 -0.04 7.64 -2.39 -0.02 -0.06 16 33 H 0.18 0.11 6.24 -2.91 -0.02 0.09 16 34 H 0.18 0.55 7.26 -2.91 -0.02 0.53 16 35 H 0.11 1.30 8.11 -2.38 -0.02 1.28 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.01 0.45 7.39 -2.39 -0.02 0.43 16 40 H 0.02 0.99 7.53 -2.39 -0.02 0.98 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.16 4.73 7.04 -2.91 -0.02 4.71 16 45 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -78.01 375.40 4.81 -73.21 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.02 Total: 3.73 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.65 Total: 9.25 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -2.12 Total: -90.33 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.76 Total: -42.91 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.01 4.81 -73.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205826078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.247 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds