Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35742 * 117.00089 * 2 1 4 4 C 1.39374 * 119.72784 * 359.97438 * 3 2 1 5 5 C 1.36464 * 120.42898 * 180.02562 * 4 3 2 6 6 C 1.39964 * 119.79609 * 0.02562 * 5 4 3 7 7 C 1.46439 * 120.98744 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.90445 * 0.02562 * 7 6 5 9 9 O 1.42898 * 109.47251 * 179.71511 * 8 7 6 10 10 C 1.42895 * 114.00038 * 179.97438 * 9 8 7 11 11 H 1.08996 * 110.64095 * 328.31055 * 10 9 8 12 12 C 1.55163 * 110.87026 * 205.06585 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.89618 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.35852 * 118.19342 * 179.72970 * 7 6 5 25 25 C 1.41002 * 119.82161 * 0.25615 * 24 7 6 26 26 O 1.21796 * 119.15353 * 180.02562 * 25 24 7 27 27 O 1.34223 * 121.69025 * 0.02562 * 25 24 7 28 28 C 1.35023 * 121.46238 * 359.97438 * 27 25 24 29 29 C 1.38526 * 119.72988 * 180.57911 * 3 2 1 30 30 H 1.08996 * 109.47501 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.47172 * 60.00400 * 1 2 3 32 32 H 1.09006 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.78487 * 0.05419 * 4 3 2 34 34 H 1.08009 * 120.09714 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47139 * 59.71579 * 8 7 6 36 36 H 1.09003 * 109.47144 * 299.71635 * 8 7 6 37 37 H 1.08998 * 111.00445 * 324.13396 * 12 10 9 38 38 H 1.09003 * 111.00541 * 87.95429 * 12 10 9 39 39 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 40 40 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 41 41 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 42 42 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 43 43 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 44 44 H 1.07999 * 120.08906 * 180.22945 * 24 7 6 45 45 H 1.07994 * 120.10782 * 359.43452 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2806 2.3747 -0.0005 5 6 1.8852 3.5981 -0.0011 6 6 3.2823 3.6835 -0.0016 7 6 3.9582 4.9825 -0.0016 8 6 3.1685 6.2660 -0.0005 9 8 4.0663 7.3777 0.0059 10 6 3.4158 8.6501 0.0069 11 1 2.4702 8.5986 -0.5326 12 6 4.3359 9.7417 -0.6008 13 6 3.7918 11.0218 0.0862 14 7 3.4529 10.5964 1.4565 15 6 3.3844 11.4147 2.5523 16 1 3.3412 10.9876 3.5433 17 6 3.3705 12.7932 2.3893 18 7 2.8951 13.3200 1.2808 19 14 4.0264 13.9004 3.7432 20 1 5.4555 13.5832 3.9932 21 1 3.2452 13.6783 4.9863 22 1 3.8997 15.3201 3.3265 23 6 3.1945 9.1490 1.4504 24 6 5.3166 4.9992 0.0035 25 6 6.0328 3.7846 0.0031 26 8 7.2504 3.8137 0.0082 27 8 5.4071 2.5971 -0.0027 28 6 4.0597 2.5105 -0.0079 29 6 3.4288 1.2754 -0.0122 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2026 2.3091 -0.0001 34 1 1.2875 4.4977 -0.0019 35 1 2.5374 6.3035 0.8875 36 1 2.5435 6.3089 -0.8925 37 1 5.3785 9.5655 -0.3365 38 1 4.2133 9.7981 -1.6825 39 1 2.9023 11.3832 -0.4297 40 1 4.5593 11.7954 0.1081 41 1 2.4772 12.7524 0.6143 42 1 3.8860 8.6462 2.1265 43 1 2.1665 8.9548 1.7562 44 1 5.8466 5.9402 0.0073 45 1 4.0145 0.3681 -0.0124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205826079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = -76.675173 kcal Electronic energy + Delta-G solvation = -29294.421960 eV Core-core repulsion = 25051.435928 eV Total energy + Delta-G solvation = -4242.986032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20376 -40.43272 -38.91385 -38.37681 -37.21662 -36.45507 -34.59398 -32.35743 -31.56708 -29.85354 -29.33055 -28.31922 -27.81990 -26.87191 -24.37913 -24.24612 -23.72350 -22.18818 -20.63348 -20.26266 -19.99629 -18.61071 -17.96656 -17.65154 -17.28627 -17.04794 -16.50686 -16.31469 -16.21369 -15.61370 -15.42580 -14.97674 -14.42361 -14.38376 -14.23278 -13.99217 -13.72372 -13.66609 -13.51192 -13.16292 -12.83002 -12.62976 -12.42948 -12.26003 -12.16608 -12.11445 -11.63250 -11.57588 -11.29464 -10.84521 -10.68776 -10.53991 -10.46602 -10.22125 -10.10597 -10.01806 -9.59978 -9.38528 -9.32629 -8.46205 -8.45144 -7.00641 -6.13073 -3.16156 -0.06507 0.56587 1.16723 1.91550 2.54083 2.79248 3.25382 3.27654 3.49152 3.54570 3.71574 3.86062 3.96780 4.21157 4.23428 4.37174 4.53897 4.57414 4.57531 4.71037 4.89178 4.92590 4.93394 5.01616 5.11458 5.21705 5.22977 5.34920 5.35978 5.40762 5.44399 5.60702 5.61587 5.66387 5.81987 5.92438 6.04662 6.17518 6.30229 6.39842 6.52011 6.64736 6.90709 6.93616 6.96768 7.25766 7.29926 7.73223 8.44129 8.97721 9.77872 10.30479 11.20355 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002180 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.215962 B =12842.907641 C =13818.711889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.181 3.819 4 C -0.224 4.224 5 C -0.016 4.016 6 C -0.179 4.179 7 C 0.027 3.973 8 C 0.092 3.908 9 O -0.371 6.371 10 C 0.077 3.923 11 H 0.068 0.932 12 C -0.129 4.129 13 C 0.144 3.856 14 N -0.602 5.602 15 C -0.336 4.336 16 H 0.067 0.933 17 C -0.026 4.026 18 N -0.920 5.920 19 Si 1.065 2.935 20 H -0.293 1.293 21 H -0.293 1.293 22 H -0.285 1.285 23 C 0.116 3.884 24 C -0.232 4.232 25 C 0.512 3.488 26 O -0.460 6.460 27 O -0.273 6.273 28 C 0.190 3.810 29 C -0.174 4.174 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.268 0.732 42 H 0.037 0.963 43 H 0.022 0.978 44 H 0.176 0.824 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -26.270 -6.263 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.134 3.866 4 C -0.243 4.243 5 C -0.034 4.034 6 C -0.181 4.181 7 C 0.026 3.974 8 C 0.016 3.984 9 O -0.290 6.290 10 C 0.020 3.980 11 H 0.086 0.914 12 C -0.168 4.168 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.464 4.464 16 H 0.085 0.915 17 C -0.227 4.227 18 N -0.562 5.562 19 Si 0.894 3.106 20 H -0.220 1.220 21 H -0.220 1.220 22 H -0.210 1.210 23 C -0.010 4.010 24 C -0.251 4.251 25 C 0.361 3.639 26 O -0.348 6.348 27 O -0.185 6.185 28 C 0.144 3.856 29 C -0.193 4.193 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.193 0.807 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.222 -24.998 -5.755 26.395 hybrid contribution -1.038 -1.378 -0.295 1.750 sum -7.259 -26.375 -6.050 28.017 Atomic orbital electron populations 1.23208 0.77290 1.04655 1.01955 1.86064 1.22214 1.26256 1.87510 1.18731 0.91088 0.84615 0.92136 1.21039 1.00961 0.91782 1.10499 1.20709 0.92002 0.98243 0.92448 1.18784 0.94405 0.91313 1.13555 1.21234 0.93988 0.92711 0.89460 1.21258 0.91606 0.83656 1.01901 1.87898 1.32532 1.13372 1.95165 1.23269 0.95659 0.81710 0.97363 0.91361 1.22989 0.99940 0.94835 0.99006 1.21620 0.97506 0.93548 0.85446 1.44445 1.80988 1.02301 1.05262 1.19763 1.51729 0.89544 0.85320 0.91547 1.25750 0.99563 0.94607 1.02775 1.70806 1.36149 1.38198 1.11002 0.83524 0.76387 0.76224 0.74425 1.22024 1.22022 1.21027 1.21746 0.97750 0.87507 0.93974 1.22444 0.94576 0.99048 1.09008 1.19299 0.87817 0.81346 0.75394 1.90996 1.12186 1.85204 1.46393 1.83542 1.19481 1.37783 1.77687 1.18457 0.79419 0.93032 0.94659 1.19435 0.91610 0.96490 1.11775 0.92000 0.92044 0.87663 0.84079 0.83900 0.90217 0.90445 0.90454 0.91303 0.95429 0.92257 0.92009 0.94523 0.96021 0.80703 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.80 101.05 0.99 1.06 16 2 O -0.31 -2.08 10.48 -18.93 -0.20 -2.28 16 3 C 0.18 1.37 6.69 -39.05 -0.26 1.11 16 4 C -0.22 -1.39 8.96 -39.80 -0.36 -1.75 16 5 C -0.02 -0.11 9.46 -39.58 -0.37 -0.49 16 6 C -0.18 -1.75 5.87 -105.01 -0.62 -2.37 16 7 C 0.03 0.30 6.08 -102.18 -0.62 -0.32 16 8 C 0.09 0.99 5.04 36.01 0.18 1.17 16 9 O -0.37 -5.42 8.63 -35.23 -0.30 -5.73 16 10 C 0.08 1.27 3.39 -24.90 -0.08 1.19 16 11 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 12 C -0.13 -2.30 6.83 -24.45 -0.17 -2.47 16 13 C 0.14 3.30 5.22 -2.40 -0.01 3.29 16 14 N -0.60 -15.27 3.33 -169.93 -0.57 -15.83 16 15 C -0.34 -9.53 10.05 -15.06 -0.15 -9.68 16 16 H 0.07 1.88 7.96 -52.48 -0.42 1.46 16 17 C -0.03 -0.74 5.09 -17.43 -0.09 -0.83 16 18 N -0.92 -27.58 12.82 55.49 0.71 -26.87 16 19 Si 1.06 25.40 30.00 -169.99 -5.10 20.31 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.12 2.40 7.01 -3.06 -0.02 2.37 16 24 C -0.23 -3.05 9.30 -39.39 -0.37 -3.41 16 25 C 0.51 7.42 7.89 31.78 0.25 7.67 16 26 O -0.46 -8.07 17.91 -19.60 -0.35 -8.43 16 27 O -0.27 -3.55 9.82 -20.79 -0.20 -3.75 16 28 C 0.19 2.03 6.76 -38.48 -0.26 1.77 16 29 C -0.17 -1.55 9.94 -39.31 -0.39 -1.94 16 30 H 0.06 0.13 7.64 -51.93 -0.40 -0.27 16 31 H 0.06 0.12 7.64 -51.93 -0.40 -0.28 16 32 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.14 0.50 6.24 -52.49 -0.33 0.17 16 34 H 0.14 0.70 7.26 -52.48 -0.38 0.32 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.66 6.84 -51.93 -0.36 0.30 16 40 H 0.06 1.50 7.73 -51.93 -0.40 1.10 16 41 H 0.27 7.97 5.83 -40.82 -0.24 7.73 16 42 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.18 2.45 7.05 -52.49 -0.37 2.08 16 45 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -34.85 374.66 -8.58 -43.43 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.86 Total: -2.86 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.35 Total: -3.63 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.15 Total: -42.71 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.06 Total: -20.19 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.85 -8.58 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205826079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.247 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds