Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35742 * 117.00089 * 2 1 4 4 C 1.39374 * 119.72784 * 359.97438 * 3 2 1 5 5 C 1.36464 * 120.42898 * 180.02562 * 4 3 2 6 6 C 1.39964 * 119.79609 * 0.02562 * 5 4 3 7 7 C 1.46439 * 120.98744 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.90445 * 0.02562 * 7 6 5 9 9 O 1.42898 * 109.47251 * 179.71511 * 8 7 6 10 10 C 1.42895 * 114.00038 * 179.97438 * 9 8 7 11 11 H 1.08996 * 110.64095 * 328.31055 * 10 9 8 12 12 C 1.55163 * 110.87026 * 205.06585 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.89618 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.35852 * 118.19342 * 179.72970 * 7 6 5 25 25 C 1.41002 * 119.82161 * 0.25615 * 24 7 6 26 26 O 1.21796 * 119.15353 * 180.02562 * 25 24 7 27 27 O 1.34223 * 121.69025 * 0.02562 * 25 24 7 28 28 C 1.35023 * 121.46238 * 359.97438 * 27 25 24 29 29 C 1.38526 * 119.72988 * 180.57911 * 3 2 1 30 30 H 1.08996 * 109.47501 * 300.00174 * 1 2 3 31 31 H 1.09002 * 109.47172 * 60.00400 * 1 2 3 32 32 H 1.09006 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.78487 * 0.05419 * 4 3 2 34 34 H 1.08009 * 120.09714 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47139 * 59.71579 * 8 7 6 36 36 H 1.09003 * 109.47144 * 299.71635 * 8 7 6 37 37 H 1.08998 * 111.00445 * 324.13396 * 12 10 9 38 38 H 1.09003 * 111.00541 * 87.95429 * 12 10 9 39 39 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 40 40 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 41 41 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 42 42 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 43 43 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 44 44 H 1.07999 * 120.08906 * 180.22945 * 24 7 6 45 45 H 1.07994 * 120.10782 * 359.43452 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2806 2.3747 -0.0005 5 6 1.8852 3.5981 -0.0011 6 6 3.2823 3.6835 -0.0016 7 6 3.9582 4.9825 -0.0016 8 6 3.1685 6.2660 -0.0005 9 8 4.0663 7.3777 0.0059 10 6 3.4158 8.6501 0.0069 11 1 2.4702 8.5986 -0.5326 12 6 4.3359 9.7417 -0.6008 13 6 3.7918 11.0218 0.0862 14 7 3.4529 10.5964 1.4565 15 6 3.3844 11.4147 2.5523 16 1 3.3412 10.9876 3.5433 17 6 3.3705 12.7932 2.3893 18 7 2.8951 13.3200 1.2808 19 14 4.0264 13.9004 3.7432 20 1 5.4555 13.5832 3.9932 21 1 3.2452 13.6783 4.9863 22 1 3.8997 15.3201 3.3265 23 6 3.1945 9.1490 1.4504 24 6 5.3166 4.9992 0.0035 25 6 6.0328 3.7846 0.0031 26 8 7.2504 3.8137 0.0082 27 8 5.4071 2.5971 -0.0027 28 6 4.0597 2.5105 -0.0079 29 6 3.4288 1.2754 -0.0122 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2026 2.3091 -0.0001 34 1 1.2875 4.4977 -0.0019 35 1 2.5374 6.3035 0.8875 36 1 2.5435 6.3089 -0.8925 37 1 5.3785 9.5655 -0.3365 38 1 4.2133 9.7981 -1.6825 39 1 2.9023 11.3832 -0.4297 40 1 4.5593 11.7954 0.1081 41 1 2.4772 12.7524 0.6143 42 1 3.8860 8.6462 2.1265 43 1 2.1665 8.9548 1.7562 44 1 5.8466 5.9402 0.0073 45 1 4.0145 0.3681 -0.0124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205826079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = -97.920949 kcal Electronic energy + Delta-G solvation = -29295.343246 eV Core-core repulsion = 25051.435928 eV Total energy + Delta-G solvation = -4243.907318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.09053 -41.04088 -40.19938 -39.29780 -38.35678 -37.60271 -35.63702 -34.21699 -32.19630 -31.10021 -30.56368 -29.44080 -28.60244 -27.96001 -26.20238 -25.15184 -24.41891 -23.05183 -22.08618 -22.00436 -20.71756 -19.66025 -19.40615 -18.79007 -18.09040 -18.01267 -17.63322 -16.98095 -16.73664 -16.71100 -16.44077 -16.09941 -15.74954 -15.64782 -15.29590 -15.10297 -15.06977 -14.80775 -14.54958 -14.38561 -13.98483 -13.70218 -13.44462 -13.24769 -13.05576 -13.03236 -12.73553 -12.62385 -12.50639 -12.39480 -12.18257 -12.11528 -11.90336 -11.59809 -11.56992 -11.48407 -11.10059 -10.61578 -10.46597 -9.99641 -9.18629 -9.05394 -8.34564 -5.33806 -0.87973 -0.12448 0.40630 1.09043 1.56849 1.65033 1.67172 1.83892 2.16227 2.33211 2.54129 2.63507 3.01540 3.17066 3.25277 3.33560 3.55579 3.64913 3.69765 3.81429 3.89208 4.04777 4.07756 4.15894 4.21361 4.33693 4.38058 4.41107 4.44879 4.51586 4.58977 4.64771 4.74799 4.82184 4.86390 4.87140 4.93402 4.96259 5.01789 5.05662 5.17098 5.25190 5.27128 5.62771 5.98932 6.14952 6.18679 6.26830 6.30528 6.88720 7.68065 8.24605 8.99172 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002180 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.215962 B =12842.907641 C =13818.711889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.190 3.810 4 C -0.213 4.213 5 C -0.005 4.005 6 C -0.196 4.196 7 C 0.061 3.939 8 C 0.082 3.918 9 O -0.383 6.383 10 C 0.099 3.901 11 H 0.103 0.897 12 C -0.118 4.118 13 C 0.146 3.854 14 N -0.628 5.628 15 C -0.348 4.348 16 H 0.059 0.941 17 C -0.077 4.077 18 N -0.946 5.946 19 Si 1.114 2.886 20 H -0.285 1.285 21 H -0.273 1.273 22 H -0.289 1.289 23 C 0.110 3.890 24 C -0.270 4.270 25 C 0.513 3.487 26 O -0.514 6.514 27 O -0.284 6.284 28 C 0.167 3.833 29 C -0.189 4.189 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.259 0.741 42 H 0.024 0.976 43 H 0.030 0.970 44 H 0.159 0.841 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 -27.823 -6.633 30.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.143 3.857 4 C -0.231 4.231 5 C -0.022 4.022 6 C -0.197 4.197 7 C 0.060 3.940 8 C 0.007 3.993 9 O -0.302 6.302 10 C 0.042 3.958 11 H 0.121 0.879 12 C -0.157 4.157 13 C 0.021 3.979 14 N -0.356 5.356 15 C -0.477 4.477 16 H 0.077 0.923 17 C -0.273 4.273 18 N -0.589 5.589 19 Si 0.938 3.062 20 H -0.212 1.212 21 H -0.199 1.199 22 H -0.215 1.215 23 C -0.015 4.015 24 C -0.289 4.289 25 C 0.366 3.634 26 O -0.406 6.406 27 O -0.196 6.196 28 C 0.123 3.877 29 C -0.208 4.208 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.177 0.823 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.776 -26.615 -6.127 29.008 hybrid contribution -0.208 -1.149 -0.170 1.180 sum -9.984 -27.765 -6.297 30.169 Atomic orbital electron populations 1.23572 0.75019 1.06335 1.03346 1.86071 1.24539 1.25939 1.86889 1.18861 0.90611 0.85700 0.90541 1.21437 1.02650 0.90643 1.08346 1.21090 0.90591 0.99957 0.90584 1.18865 0.95677 0.89952 1.15161 1.21411 0.93090 0.93828 0.85682 1.21674 0.91299 0.81657 1.04661 1.87903 1.33699 1.13512 1.95122 1.22965 0.96510 0.82077 0.94292 0.87941 1.22860 0.99478 0.92723 1.00592 1.21537 0.96165 0.95163 0.85054 1.44719 1.81297 1.04138 1.05449 1.20007 1.50991 0.90392 0.86266 0.92298 1.27074 0.99622 0.96345 1.04245 1.70901 1.38015 1.38185 1.11832 0.82870 0.76340 0.74196 0.72793 1.21161 1.19864 1.21477 1.21936 0.97669 0.84869 0.97036 1.22132 0.95596 0.97708 1.13487 1.19427 0.87424 0.81992 0.74539 1.90945 1.14035 1.85979 1.49623 1.83468 1.21293 1.37211 1.77613 1.18823 0.78380 0.94385 0.96132 1.19549 0.92730 0.95939 1.12611 0.90624 0.90459 0.86154 0.80482 0.80634 0.88108 0.86463 0.91411 0.87835 0.96270 0.95974 0.93047 0.95759 0.95175 0.82296 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.80 113.37 1.11 1.13 16 2 O -0.32 -3.36 10.48 -90.67 -0.95 -4.31 16 3 C 0.19 2.30 6.69 22.61 0.15 2.45 16 4 C -0.21 -1.59 8.96 22.13 0.20 -1.40 16 5 C 0.00 -0.04 9.46 22.27 0.21 0.17 16 6 C -0.20 -3.35 5.87 -20.12 -0.12 -3.47 16 7 C 0.06 1.24 6.08 -18.28 -0.11 1.13 16 8 C 0.08 1.43 5.04 71.24 0.36 1.79 16 9 O -0.38 -10.21 8.63 -148.98 -1.29 -11.50 16 10 C 0.10 2.97 3.39 31.78 0.11 3.08 16 11 H 0.10 2.43 7.88 -2.39 -0.02 2.41 16 12 C -0.12 -4.04 6.83 32.07 0.22 -3.82 16 13 C 0.15 6.74 5.22 86.94 0.45 7.20 16 14 N -0.63 -32.03 3.33 -691.53 -2.30 -34.33 16 15 C -0.35 -20.00 10.05 84.03 0.84 -19.16 16 16 H 0.06 3.37 7.96 -2.91 -0.02 3.35 16 17 C -0.08 -4.45 5.09 84.86 0.43 -4.02 16 18 N -0.95 -57.79 12.82 21.65 0.28 -57.51 16 19 Si 1.11 51.69 30.00 68.60 2.06 53.75 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 C 0.11 4.40 7.01 86.73 0.61 5.01 16 24 C -0.27 -7.34 9.30 22.39 0.21 -7.13 16 25 C 0.51 16.05 7.89 68.50 0.54 16.59 16 26 O -0.51 -19.78 17.91 18.96 0.34 -19.44 16 27 O -0.28 -7.83 9.82 14.69 0.14 -7.69 16 28 C 0.17 3.50 6.76 22.98 0.16 3.66 16 29 C -0.19 -3.18 9.94 22.45 0.22 -2.96 16 30 H 0.08 -0.05 7.64 -2.39 -0.02 -0.07 16 31 H 0.08 -0.08 7.64 -2.39 -0.02 -0.10 16 32 H 0.12 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.18 0.08 6.24 -2.91 -0.02 0.06 16 34 H 0.18 0.52 7.26 -2.91 -0.02 0.50 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 1.24 8.11 -2.39 -0.02 1.22 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.02 0.93 6.84 -2.39 -0.02 0.91 16 40 H 0.02 1.15 7.73 -2.39 -0.02 1.13 16 41 H 0.26 15.76 5.83 -92.70 -0.54 15.22 16 42 H 0.02 1.02 8.06 -2.39 -0.02 1.01 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.16 4.76 7.05 -2.91 -0.02 4.74 16 45 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -81.30 374.66 5.13 -76.17 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.25 Total: 4.62 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.59 Total: 0.25 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.02 Total: -91.85 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.75 Total: -42.94 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.06 Total: 53.75 kcal Total: -81.30 5.13 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205826079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.751 kcal (2) G-P(sol) polarization free energy of solvation -81.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds