Wall clock time and date at job start Wed Apr 1 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35744 * 116.99917 * 2 1 4 4 C 1.39376 * 119.73142 * 0.02562 * 3 2 1 5 5 C 1.36458 * 120.43163 * 180.02562 * 4 3 2 6 6 C 1.39967 * 119.79712 * 359.97438 * 5 4 3 7 7 C 1.46432 * 120.99055 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.90790 * 359.95406 * 7 6 5 9 9 O 1.42894 * 109.47334 * 180.02562 * 8 7 6 10 10 C 1.42901 * 114.00234 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.17301 * 149.99598 * 10 9 8 12 12 N 1.47489 * 87.92897 * 87.81628 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 C 1.35848 * 118.19359 * 180.23232 * 7 6 5 24 24 C 1.41013 * 119.82295 * 359.46789 * 23 7 6 25 25 O 1.21793 * 119.15433 * 180.28326 * 24 23 7 26 26 O 1.34223 * 121.68570 * 0.56998 * 24 23 7 27 27 C 1.35026 * 121.46071 * 359.70999 * 26 24 23 28 28 C 1.38515 * 119.73084 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47395 * 300.00382 * 1 2 3 30 30 H 1.09006 * 109.47212 * 60.00236 * 1 2 3 31 31 H 1.08998 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.78358 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.09818 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46674 * 59.99778 * 8 7 6 35 35 H 1.09001 * 109.46492 * 300.00230 * 8 7 6 36 36 H 1.09007 * 113.25096 * 17.04906 * 10 9 8 37 37 H 1.08997 * 113.47543 * 333.05437 * 11 10 9 38 38 H 1.08997 * 113.47777 * 202.57513 * 11 10 9 39 39 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 40 40 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 43 43 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 44 44 H 1.08002 * 120.09099 * 179.75070 * 23 7 6 45 45 H 1.08000 * 120.10371 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2806 2.3748 0.0005 5 6 1.8852 3.5982 0.0000 6 6 3.2823 3.6836 -0.0005 7 6 3.9583 4.9825 -0.0005 8 6 3.1686 6.2661 -0.0010 9 8 4.0665 7.3777 -0.0015 10 6 3.4161 8.6502 -0.0014 11 6 4.2103 9.7619 0.6985 12 7 4.8791 10.0218 -0.5901 13 6 5.0222 11.4645 -0.8274 14 6 5.9177 11.6912 -2.0180 15 1 6.3381 10.8480 -2.5460 16 6 6.1995 12.9752 -2.4341 17 7 6.9806 13.1731 -3.4735 18 14 5.4718 14.4336 -1.5214 19 1 4.1626 14.7915 -2.1240 20 1 5.2784 14.0771 -0.0929 21 1 6.3961 15.5915 -1.6219 22 6 3.6749 9.4933 -1.2578 23 6 5.3166 4.9992 -0.0059 24 6 6.0329 3.7845 0.0001 25 8 7.2505 3.8136 0.0004 26 8 5.4071 2.5970 -0.0003 27 6 4.0596 2.5105 -0.0006 28 6 3.4288 1.2755 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2026 2.3092 0.0014 33 1 1.2875 4.4977 0.0000 34 1 2.5403 6.3064 0.8888 35 1 2.5409 6.3061 -0.8912 36 1 2.3678 8.5976 0.2927 37 1 4.8849 9.3932 1.4712 38 1 3.5893 10.5900 1.0401 39 1 5.4610 11.9356 0.0522 40 1 4.0420 11.8997 -1.0218 41 1 7.1786 14.0764 -3.7664 42 1 2.9112 10.2496 -1.4382 43 1 3.8958 8.8969 -2.1430 44 1 5.8466 5.9402 -0.0101 45 1 4.0144 0.3681 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205835056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:17 Heat of formation + Delta-G solvation = -52.475770 kcal Electronic energy + Delta-G solvation = -28933.805868 eV Core-core repulsion = 24691.869200 eV Total energy + Delta-G solvation = -4241.936667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18165 -40.43028 -39.85134 -38.40286 -37.54524 -36.73120 -34.52131 -32.72560 -31.57349 -29.93169 -29.75042 -28.22748 -27.54126 -25.61417 -25.26548 -24.32322 -23.74106 -22.20973 -21.39315 -20.11263 -19.67720 -18.52480 -17.94167 -17.25825 -17.02315 -16.79301 -16.45198 -16.32075 -16.21752 -15.71802 -15.66648 -15.21615 -14.59456 -14.39732 -14.34965 -14.10320 -14.02165 -13.67394 -13.64933 -13.25868 -12.84363 -12.64958 -12.48607 -12.42479 -12.26151 -12.17362 -11.91660 -11.60069 -11.50502 -11.25056 -10.89768 -10.55278 -10.44736 -10.18020 -10.01973 -9.79467 -9.41594 -9.34697 -9.32379 -8.57953 -8.43683 -7.97690 -6.04297 -4.01736 -0.05041 0.56876 1.17737 1.93573 2.56390 2.79055 3.13916 3.25138 3.28843 3.33604 3.34448 3.86927 3.95224 4.14141 4.23208 4.36386 4.40547 4.52425 4.55394 4.60283 4.64263 4.73098 4.87893 4.88975 5.00124 5.05148 5.06881 5.22287 5.25576 5.34877 5.38814 5.57654 5.63962 5.66647 5.75159 5.82996 5.93179 6.03451 6.08949 6.22198 6.46434 6.64390 6.65908 6.96828 7.15645 7.30804 7.31465 7.68758 7.83529 8.64021 9.07716 9.56403 11.09153 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002027 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.568818 B =13810.591617 C =14737.618118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.180 3.820 4 C -0.225 4.225 5 C -0.018 4.018 6 C -0.177 4.177 7 C 0.019 3.981 8 C 0.092 3.908 9 O -0.343 6.343 10 C 0.056 3.944 11 C -0.010 4.010 12 N -0.444 5.444 13 C 0.126 3.874 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.066 3.934 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.268 1.268 21 H -0.285 1.285 22 C -0.009 4.009 23 C -0.223 4.223 24 C 0.511 3.489 25 O -0.455 6.455 26 O -0.273 6.273 27 C 0.190 3.810 28 C -0.173 4.173 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.028 0.972 40 H -0.005 1.005 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.180 0.820 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.665 -25.349 10.110 34.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.243 4.243 5 C -0.036 4.036 6 C -0.179 4.179 7 C 0.018 3.982 8 C 0.016 3.984 9 O -0.261 6.261 10 C -0.002 4.002 11 C -0.140 4.140 12 N -0.166 5.166 13 C -0.002 4.002 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.193 1.193 21 H -0.210 1.210 22 C -0.138 4.138 23 C -0.242 4.242 24 C 0.359 3.641 25 O -0.342 6.342 26 O -0.186 6.186 27 C 0.144 3.856 28 C -0.192 4.192 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.197 0.803 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.885 -25.802 9.842 33.455 hybrid contribution -1.611 1.744 0.454 2.417 sum -20.496 -24.058 10.296 33.240 Atomic orbital electron populations 1.23201 0.77353 1.04633 1.01885 1.86069 1.22160 1.26282 1.87552 1.18721 0.91091 0.84600 0.92295 1.21019 1.00874 0.91817 1.10631 1.20664 0.91975 0.98125 0.92826 1.18769 0.94355 0.91328 1.13404 1.21141 0.93956 0.92546 0.90536 1.21291 0.91601 0.83809 1.01713 1.87983 1.31227 1.12288 1.94581 1.23322 0.95031 0.83115 0.98723 1.24103 0.97357 0.95544 0.96951 1.69029 1.28345 1.17847 1.01370 1.20762 0.96092 0.84927 0.98376 1.20968 1.28257 0.93878 1.11282 0.90114 1.24946 0.95026 0.98634 0.94914 1.69900 1.36954 1.21534 1.25422 0.86859 0.79213 0.82868 0.80769 1.20364 1.19298 1.21047 1.24260 0.93946 0.97616 0.97997 1.22550 0.94608 0.99265 1.07801 1.19328 0.87872 0.81325 0.75535 1.91015 1.12152 1.85105 1.45883 1.83554 1.19412 1.37873 1.77714 1.18459 0.79508 0.93014 0.94570 1.19445 0.91615 0.96544 1.11637 0.92088 0.92041 0.87692 0.84170 0.84029 0.90503 0.90306 0.90543 0.89614 0.91091 0.95430 0.98746 0.92660 0.90997 0.89696 0.80319 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.80 101.05 0.99 1.05 16 2 O -0.31 -1.97 10.48 -18.94 -0.20 -2.17 16 3 C 0.18 1.28 6.69 -39.06 -0.26 1.02 16 4 C -0.22 -1.23 8.96 -39.80 -0.36 -1.59 16 5 C -0.02 -0.11 9.46 -39.58 -0.37 -0.48 16 6 C -0.18 -1.62 5.87 -105.01 -0.62 -2.24 16 7 C 0.02 0.20 6.08 -102.18 -0.62 -0.42 16 8 C 0.09 0.84 5.01 36.01 0.18 1.02 16 9 O -0.34 -4.63 8.95 -35.23 -0.32 -4.95 16 10 C 0.06 0.75 4.65 -26.20 -0.12 0.63 16 11 C -0.01 -0.16 7.52 -7.54 -0.06 -0.22 16 12 N -0.44 -9.38 6.32 -246.10 -1.55 -10.94 16 13 C 0.13 3.05 3.64 -4.98 -0.02 3.03 16 14 C -0.51 -14.79 9.94 -34.44 -0.34 -15.14 16 15 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 18 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.01 -0.15 7.56 -7.54 -0.06 -0.20 16 23 C -0.22 -2.97 9.30 -39.39 -0.37 -3.33 16 24 C 0.51 7.55 7.89 31.78 0.25 7.80 16 25 O -0.45 -8.28 17.91 -19.60 -0.35 -8.63 16 26 O -0.27 -3.57 9.82 -20.80 -0.20 -3.78 16 27 C 0.19 1.98 6.76 -38.48 -0.26 1.72 16 28 C -0.17 -1.50 9.94 -39.32 -0.39 -1.89 16 29 H 0.06 0.08 7.64 -51.93 -0.40 -0.31 16 30 H 0.06 0.09 7.64 -51.93 -0.40 -0.30 16 31 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.14 0.38 6.25 -52.48 -0.33 0.05 16 33 H 0.14 0.50 7.26 -52.49 -0.38 0.12 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 39 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 40 H -0.01 -0.12 6.73 -51.93 -0.35 -0.47 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.07 1.16 7.42 -51.93 -0.39 0.78 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.18 2.65 7.05 -52.49 -0.37 2.28 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -36.45 378.20 -9.26 -45.71 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.92 Total: -3.12 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.52 Total: -7.38 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.78 Total: -38.21 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.07 Total: -19.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.45 -9.26 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205835056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.764 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds