Wall clock time and date at job start Wed Apr 1 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35744 * 116.99917 * 2 1 4 4 C 1.39376 * 119.73142 * 0.02562 * 3 2 1 5 5 C 1.36458 * 120.43163 * 180.02562 * 4 3 2 6 6 C 1.39967 * 119.79712 * 359.97438 * 5 4 3 7 7 C 1.46432 * 120.99055 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.90790 * 359.95406 * 7 6 5 9 9 O 1.42894 * 109.47334 * 180.02562 * 8 7 6 10 10 C 1.42901 * 114.00234 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.17301 * 149.99598 * 10 9 8 12 12 N 1.47489 * 87.92897 * 87.81628 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 C 1.35848 * 118.19359 * 180.23232 * 7 6 5 24 24 C 1.41013 * 119.82295 * 359.46789 * 23 7 6 25 25 O 1.21793 * 119.15433 * 180.28326 * 24 23 7 26 26 O 1.34223 * 121.68570 * 0.56998 * 24 23 7 27 27 C 1.35026 * 121.46071 * 359.70999 * 26 24 23 28 28 C 1.38515 * 119.73084 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47395 * 300.00382 * 1 2 3 30 30 H 1.09006 * 109.47212 * 60.00236 * 1 2 3 31 31 H 1.08998 * 109.47199 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.78358 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.09818 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46674 * 59.99778 * 8 7 6 35 35 H 1.09001 * 109.46492 * 300.00230 * 8 7 6 36 36 H 1.09007 * 113.25096 * 17.04906 * 10 9 8 37 37 H 1.08997 * 113.47543 * 333.05437 * 11 10 9 38 38 H 1.08997 * 113.47777 * 202.57513 * 11 10 9 39 39 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 40 40 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 43 43 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 44 44 H 1.08002 * 120.09099 * 179.75070 * 23 7 6 45 45 H 1.08000 * 120.10371 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2806 2.3748 0.0005 5 6 1.8852 3.5982 0.0000 6 6 3.2823 3.6836 -0.0005 7 6 3.9583 4.9825 -0.0005 8 6 3.1686 6.2661 -0.0010 9 8 4.0665 7.3777 -0.0015 10 6 3.4161 8.6502 -0.0014 11 6 4.2103 9.7619 0.6985 12 7 4.8791 10.0218 -0.5901 13 6 5.0222 11.4645 -0.8274 14 6 5.9177 11.6912 -2.0180 15 1 6.3381 10.8480 -2.5460 16 6 6.1995 12.9752 -2.4341 17 7 6.9806 13.1731 -3.4735 18 14 5.4718 14.4336 -1.5214 19 1 4.1626 14.7915 -2.1240 20 1 5.2784 14.0771 -0.0929 21 1 6.3961 15.5915 -1.6219 22 6 3.6749 9.4933 -1.2578 23 6 5.3166 4.9992 -0.0059 24 6 6.0329 3.7845 0.0001 25 8 7.2505 3.8136 0.0004 26 8 5.4071 2.5970 -0.0003 27 6 4.0596 2.5105 -0.0006 28 6 3.4288 1.2755 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2026 2.3092 0.0014 33 1 1.2875 4.4977 0.0000 34 1 2.5403 6.3064 0.8888 35 1 2.5409 6.3061 -0.8912 36 1 2.3678 8.5976 0.2927 37 1 4.8849 9.3932 1.4712 38 1 3.5893 10.5900 1.0401 39 1 5.4610 11.9356 0.0522 40 1 4.0420 11.8997 -1.0218 41 1 7.1786 14.0764 -3.7664 42 1 2.9112 10.2496 -1.4382 43 1 3.8958 8.8969 -2.1430 44 1 5.8466 5.9402 -0.0101 45 1 4.0144 0.3681 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205835056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:16 Heat of formation + Delta-G solvation = -80.143198 kcal Electronic energy + Delta-G solvation = -28935.005617 eV Core-core repulsion = 24691.869200 eV Total energy + Delta-G solvation = -4243.136417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.06307 -41.08775 -41.01288 -39.29741 -38.54965 -37.57652 -35.47911 -34.82057 -32.16649 -31.59895 -30.52819 -28.94623 -28.10389 -27.10894 -26.68609 -25.12947 -24.37759 -23.24948 -22.93325 -21.05116 -20.59380 -19.28380 -18.97145 -18.75973 -18.00219 -17.97060 -17.52054 -17.03202 -16.75987 -16.70971 -16.56893 -16.31837 -16.01669 -15.51515 -15.35431 -15.10601 -14.91949 -14.63475 -14.53230 -14.49746 -14.30009 -13.69408 -13.58081 -13.36351 -13.18340 -13.09222 -12.95843 -12.76137 -12.46327 -12.21170 -12.08309 -12.02661 -11.75962 -11.51460 -11.44542 -11.41361 -10.98944 -10.80534 -10.36740 -9.96389 -9.48503 -9.15478 -8.30063 -6.35065 -0.84084 -0.09101 0.44314 1.11519 1.32155 1.36846 1.47491 1.70233 2.20561 2.33379 2.37064 2.57825 3.02027 3.06115 3.22830 3.34890 3.46435 3.55707 3.69848 3.85341 4.03712 4.10725 4.16310 4.24078 4.40314 4.42873 4.45235 4.47762 4.52393 4.57938 4.64645 4.69660 4.71705 4.78112 4.80455 4.84848 4.89542 4.97044 5.01216 5.05622 5.20410 5.30288 5.50893 5.79082 6.00697 6.03434 6.21913 6.29432 6.30871 6.62194 6.71541 7.28464 8.87690 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002027 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.568818 B =13810.591617 C =14737.618118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.190 3.810 4 C -0.212 4.212 5 C 0.000 4.000 6 C -0.195 4.195 7 C 0.063 3.937 8 C 0.082 3.918 9 O -0.376 6.376 10 C 0.088 3.912 11 C -0.013 4.013 12 N -0.497 5.497 13 C 0.138 3.862 14 C -0.522 4.522 15 H 0.022 0.978 16 C -0.001 4.001 17 N -0.953 5.953 18 Si 0.959 3.041 19 H -0.259 1.259 20 H -0.246 1.246 21 H -0.283 1.283 22 C -0.018 4.018 23 C -0.276 4.276 24 C 0.512 3.488 25 O -0.518 6.518 26 O -0.286 6.286 27 C 0.163 3.837 28 C -0.193 4.193 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.024 0.976 40 H 0.012 0.988 41 H 0.267 0.733 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.152 0.848 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.385 -25.140 12.220 39.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.237 6.237 3 C 0.143 3.857 4 C -0.230 4.230 5 C -0.017 4.017 6 C -0.196 4.196 7 C 0.062 3.938 8 C 0.007 3.993 9 O -0.295 6.295 10 C 0.030 3.970 11 C -0.141 4.141 12 N -0.219 5.219 13 C 0.010 3.990 14 C -0.560 4.560 15 H 0.040 0.960 16 C -0.197 4.197 17 N -0.593 5.593 18 Si 0.781 3.219 19 H -0.184 1.184 20 H -0.170 1.170 21 H -0.209 1.209 22 C -0.148 4.148 23 C -0.295 4.295 24 C 0.364 3.636 25 O -0.410 6.410 26 O -0.198 6.198 27 C 0.119 3.881 28 C -0.212 4.212 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.137 0.863 32 H 0.198 0.802 33 H 0.202 0.798 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.666 -25.649 11.964 38.207 hybrid contribution 0.247 1.365 -0.272 1.414 sum -25.419 -24.284 11.692 37.048 Atomic orbital electron populations 1.23578 0.74959 1.06290 1.03444 1.86075 1.24617 1.26063 1.86908 1.18869 0.90491 0.85844 0.90544 1.21464 1.02690 0.90558 1.08322 1.21133 0.90240 1.00110 0.90217 1.18884 0.95842 0.89718 1.15137 1.21501 0.92773 0.94365 0.85189 1.21790 0.91055 0.81143 1.05273 1.87989 1.33560 1.13443 1.94521 1.23134 0.97284 0.82042 0.94501 1.24217 0.97673 0.97600 0.94655 1.68913 1.32027 1.15501 1.05483 1.20504 0.95295 0.87705 0.95481 1.21267 1.29252 0.92492 1.12985 0.95997 1.26065 0.95343 1.02503 0.95836 1.70093 1.38930 1.22633 1.27665 0.85542 0.78702 0.77476 0.80132 1.18356 1.16972 1.20881 1.24388 0.92698 0.98636 0.99047 1.22102 0.96081 0.97354 1.13971 1.19489 0.87432 0.82091 0.74543 1.90951 1.14324 1.86009 1.49766 1.83467 1.21545 1.37173 1.77648 1.18907 0.78340 0.94648 0.96205 1.19538 0.92908 0.95847 1.12894 0.90316 0.90478 0.86337 0.80190 0.79780 0.85707 0.86995 0.84454 0.90160 0.88673 0.95748 0.97042 0.92406 0.89597 0.91934 0.83008 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.80 113.37 1.11 1.12 16 2 O -0.32 -3.15 10.48 -90.69 -0.95 -4.10 16 3 C 0.19 2.13 6.69 22.61 0.15 2.28 16 4 C -0.21 -1.15 8.96 22.13 0.20 -0.95 16 5 C 0.00 0.00 9.46 22.27 0.21 0.21 16 6 C -0.19 -3.11 5.87 -20.12 -0.12 -3.23 16 7 C 0.06 1.23 6.08 -18.28 -0.11 1.12 16 8 C 0.08 1.12 5.01 71.24 0.36 1.48 16 9 O -0.38 -9.34 8.95 -148.98 -1.33 -10.67 16 10 C 0.09 2.00 4.65 30.94 0.14 2.14 16 11 C -0.01 -0.37 7.52 83.57 0.63 0.26 16 12 N -0.50 -21.05 6.32 -932.93 -5.89 -26.94 16 13 C 0.14 6.67 3.64 85.55 0.31 6.98 16 14 C -0.52 -31.88 9.94 25.60 0.25 -31.62 16 15 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 16 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 17 N -0.95 -61.88 13.96 21.45 0.30 -61.59 16 18 Si 0.96 44.24 27.47 68.60 1.88 46.13 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 C -0.02 -0.60 7.56 83.58 0.63 0.03 16 23 C -0.28 -8.03 9.30 22.40 0.21 -7.83 16 24 C 0.51 17.21 7.89 68.50 0.54 17.75 16 25 O -0.52 -21.76 17.91 18.97 0.34 -21.42 16 26 O -0.29 -8.33 9.82 14.66 0.14 -8.19 16 27 C 0.16 3.46 6.76 22.98 0.16 3.61 16 28 C -0.19 -3.25 9.94 22.44 0.22 -3.03 16 29 H 0.08 -0.21 7.64 -2.38 -0.02 -0.23 16 30 H 0.08 -0.17 7.64 -2.38 -0.02 -0.19 16 31 H 0.12 -0.25 8.14 -2.39 -0.02 -0.26 16 32 H 0.18 -0.39 6.25 -2.91 -0.02 -0.41 16 33 H 0.19 -0.29 7.26 -2.91 -0.02 -0.31 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.14 1.54 7.88 -2.38 -0.02 1.52 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.10 2.35 7.91 -2.39 -0.02 2.33 16 39 H 0.02 1.18 7.14 -2.38 -0.02 1.16 16 40 H 0.01 0.53 6.73 -2.39 -0.02 0.51 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.26 16 42 H 0.09 2.54 7.42 -2.39 -0.02 2.52 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.15 5.18 7.05 -2.91 -0.02 5.16 16 45 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -92.02 378.20 0.82 -91.21 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.97 Total: 4.83 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.36 Total: -9.26 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -5.59 Total: -88.53 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.80 Total: -44.38 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -92.02 0.82 -91.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205835056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.064 kcal (2) G-P(sol) polarization free energy of solvation -92.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds