Wall clock time and date at job start Wed Apr 1 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99796 * 2 1 4 4 C 1.50701 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.35847 * 120.90464 * 0.02562 * 4 3 2 6 6 C 1.41003 * 119.82133 * 179.97438 * 5 4 3 7 7 O 1.21802 * 119.15175 * 180.02562 * 6 5 4 8 8 O 1.34216 * 121.69009 * 0.02562 * 6 5 4 9 9 C 1.35027 * 121.46914 * 359.97438 * 8 6 5 10 10 C 1.38676 * 120.73940 * 180.31947 * 9 8 6 11 11 C 1.38516 * 119.78362 * 180.20583 * 10 9 8 12 12 O 1.35748 * 119.72931 * 179.77423 * 11 10 9 13 13 C 1.42899 * 117.00365 * 173.99489 * 12 11 10 14 14 H 1.09000 * 110.63923 * 330.76901 * 13 12 11 15 15 C 1.55153 * 110.72126 * 207.61948 * 13 12 11 16 16 C 1.54910 * 101.58085 * 205.95507 * 15 13 12 17 17 N 1.47413 * 104.83218 * 37.01321 * 16 15 13 18 18 C 1.36942 * 125.64760 * 155.82507 * 17 16 15 19 19 H 1.08000 * 119.99817 * 180.02562 * 18 17 16 20 20 C 1.38806 * 119.99944 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00331 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46864 * 59.99865 * 22 20 18 24 24 H 1.48498 * 109.47324 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47083 * 300.00183 * 22 20 18 26 26 C 1.47023 * 108.70412 * 335.86743 * 17 16 15 27 27 C 1.39368 * 120.54518 * 359.48466 * 11 10 9 28 28 C 1.36463 * 120.43242 * 0.24127 * 27 11 10 29 29 C 1.39968 * 119.79175 * 0.02562 * 28 27 11 30 30 H 1.08997 * 109.46909 * 299.99513 * 1 2 3 31 31 H 1.08993 * 109.47014 * 60.00069 * 1 2 3 32 32 H 1.09007 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46916 * 59.99993 * 3 2 1 34 34 H 1.08997 * 109.47303 * 300.00524 * 3 2 1 35 35 H 1.08000 * 120.08628 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.10767 * 359.96988 * 10 9 8 37 37 H 1.08995 * 111.00707 * 324.03291 * 15 13 12 38 38 H 1.09002 * 111.00169 * 87.87842 * 15 13 12 39 39 H 1.09001 * 110.36123 * 155.85309 * 16 15 13 40 40 H 1.08996 * 110.36803 * 278.05610 * 16 15 13 41 41 H 0.96999 * 120.00423 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.88243 * 241.64479 * 26 17 16 43 43 H 1.09004 * 109.88066 * 120.47844 * 26 17 16 44 44 H 1.07999 * 119.78829 * 180.25381 * 27 11 10 45 45 H 1.07999 * 120.11218 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1161 -0.0306 0.0006 6 6 5.5235 -0.1153 0.0006 7 8 6.0519 -1.2128 0.0001 8 8 6.2960 0.9823 0.0013 9 6 5.7598 2.2216 0.0013 10 6 6.5723 3.3454 -0.0047 11 6 6.0012 4.6073 -0.0002 12 8 6.7975 5.7066 -0.0014 13 6 6.1522 6.9752 -0.1298 14 1 5.2280 6.8801 -0.6997 15 6 7.1012 8.0094 -0.7909 16 6 6.5430 9.3433 -0.2352 17 7 6.1433 9.0371 1.1503 18 6 6.0380 9.9453 2.1698 19 1 5.7364 9.6194 3.1543 20 6 6.3190 11.2847 1.9378 21 7 6.6861 11.6820 0.7380 22 14 6.1747 12.5237 3.3284 23 1 7.1024 12.1472 4.4251 24 1 6.5267 13.8758 2.8252 25 1 4.7808 12.5330 3.8404 26 6 5.8774 7.5950 1.2565 27 6 4.6156 4.7577 -0.0004 28 6 3.8015 3.6626 -0.0002 29 6 4.3614 2.3798 0.0009 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.5194 -0.9308 0.0005 36 1 7.6468 3.2370 -0.0090 37 1 8.1317 7.8540 -0.4718 38 1 7.0209 7.9746 -1.8774 39 1 7.3160 10.1118 -0.2461 40 1 5.6804 9.6658 -0.8183 41 1 6.8820 12.6180 0.5758 42 1 4.8372 7.4296 1.5369 43 1 6.5392 7.1498 1.9995 44 1 4.1834 5.7474 -0.0010 45 1 2.7285 3.7851 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225847914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:27 Heat of formation + Delta-G solvation = -71.975206 kcal Electronic energy + Delta-G solvation = -29316.072374 eV Core-core repulsion = 25073.290148 eV Total energy + Delta-G solvation = -4242.782226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10716 -40.24469 -38.76795 -38.36332 -37.21607 -36.31716 -34.68176 -32.47087 -31.19210 -29.74190 -29.18641 -28.83090 -27.58082 -26.40325 -24.89461 -24.18589 -23.52745 -22.32235 -20.89156 -20.41265 -19.42790 -18.56095 -17.77913 -17.31189 -17.03722 -16.98923 -16.38169 -16.34749 -15.97033 -15.55477 -15.28120 -15.01155 -14.83359 -14.33676 -14.08468 -14.03300 -13.60911 -13.52352 -13.29494 -13.19134 -12.87418 -12.64137 -12.37238 -12.08667 -11.99991 -11.81000 -11.79882 -11.34757 -11.11604 -10.86661 -10.85307 -10.57623 -10.48574 -10.35993 -10.21838 -9.97087 -9.82662 -9.74379 -9.08443 -8.78578 -8.20309 -7.01258 -5.79031 -3.22113 0.01495 0.79668 1.30302 2.08747 2.63667 2.93907 3.23255 3.33486 3.38227 3.39352 3.43579 3.87408 4.04334 4.20337 4.37028 4.49646 4.58295 4.66008 4.70882 4.81682 4.89598 4.89772 4.97309 5.05092 5.09887 5.18894 5.34992 5.37402 5.39747 5.47869 5.56325 5.59241 5.75534 5.86650 5.96589 6.03848 6.14651 6.27851 6.33252 6.41392 6.48926 6.50611 7.00275 7.28270 7.29594 7.34391 7.47624 7.68900 8.19779 9.06981 9.67227 10.28949 11.25248 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002175 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.917555 B =12872.463232 C =13861.088742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.092 3.908 4 C 0.033 3.967 5 C -0.245 4.245 6 C 0.512 3.488 7 O -0.469 6.469 8 O -0.270 6.270 9 C 0.191 3.809 10 C -0.182 4.182 11 C 0.204 3.796 12 O -0.290 6.290 13 C 0.064 3.936 14 H 0.084 0.916 15 C -0.137 4.137 16 C 0.152 3.848 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.120 3.880 27 C -0.223 4.223 28 C -0.017 4.017 29 C -0.198 4.198 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.018 0.982 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.038 0.962 44 H 0.148 0.852 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -18.505 -4.766 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.016 3.984 4 C 0.032 3.968 5 C -0.264 4.264 6 C 0.362 3.638 7 O -0.357 6.357 8 O -0.182 6.182 9 C 0.146 3.854 10 C -0.201 4.201 11 C 0.156 3.844 12 O -0.201 6.201 13 C 0.008 3.992 14 H 0.102 0.898 15 C -0.176 4.176 16 C 0.027 3.973 17 N -0.328 5.328 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.748 3.252 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.007 4.007 27 C -0.241 4.241 28 C -0.035 4.035 29 C -0.199 4.199 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.186 0.814 36 H 0.170 0.830 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.165 0.835 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.224 -18.959 -4.713 22.050 hybrid contribution -0.725 0.901 0.715 1.359 sum -10.949 -18.058 -3.998 21.493 Atomic orbital electron populations 1.22817 0.79828 1.03415 1.00451 1.87865 1.20532 1.26502 1.95590 1.21327 0.88681 0.86052 1.02318 1.21139 0.94522 0.91979 0.89143 1.22282 0.93113 1.00200 1.10793 1.19213 0.87291 0.81982 0.75320 1.90975 1.76386 1.21345 1.47024 1.83539 1.43643 1.13521 1.77520 1.18440 0.90030 0.82059 0.94843 1.19476 1.01228 0.86954 1.12442 1.18882 0.89314 0.87159 0.89067 1.86190 1.35449 1.13436 1.85062 1.23920 0.97072 0.79341 0.98882 0.89801 1.23263 0.99447 0.95847 0.99035 1.22013 0.99425 0.92445 0.83403 1.44350 1.79961 1.00805 1.07641 1.19023 1.39554 0.87449 0.89497 0.90346 1.24804 1.01501 0.96976 0.97106 1.69728 1.52340 1.15459 1.19552 0.86107 0.77891 0.80360 0.80861 1.21007 1.21452 1.21114 1.21659 0.98095 0.87410 0.93493 1.21239 0.92548 1.00986 1.09332 1.20602 1.00063 0.89672 0.93133 1.18629 0.91379 0.93886 1.15997 0.93548 0.93586 0.89068 0.90036 0.90079 0.81357 0.82972 0.90549 0.91293 0.86730 0.96413 0.93428 0.95414 0.94455 0.83477 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.94 9.25 -35.23 -0.33 -3.26 16 3 C 0.09 0.60 5.17 36.01 0.19 0.79 16 4 C 0.03 0.31 6.08 -102.18 -0.62 -0.31 16 5 C -0.24 -2.70 9.30 -39.39 -0.37 -3.07 16 6 C 0.51 7.06 7.89 31.78 0.25 7.31 16 7 O -0.47 -7.77 17.91 -19.60 -0.35 -8.12 16 8 O -0.27 -3.71 9.82 -20.79 -0.20 -3.91 16 9 C 0.19 2.34 6.76 -38.48 -0.26 2.08 16 10 C -0.18 -2.24 9.94 -39.32 -0.39 -2.63 16 11 C 0.20 2.62 6.68 -39.06 -0.26 2.36 16 12 O -0.29 -4.37 9.86 -18.95 -0.19 -4.56 16 13 C 0.06 1.01 2.76 -24.90 -0.07 0.95 16 14 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 15 C -0.14 -2.40 6.81 -24.58 -0.17 -2.57 16 16 C 0.15 3.41 5.89 -2.53 -0.01 3.40 16 17 N -0.60 -14.51 3.39 -170.08 -0.58 -15.08 16 18 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -25.64 10.09 55.49 0.56 -25.08 16 22 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.12 2.33 6.96 -3.06 -0.02 2.30 16 27 C -0.22 -2.41 8.89 -39.80 -0.35 -2.77 16 28 C -0.02 -0.15 9.46 -39.57 -0.37 -0.52 16 29 C -0.20 -2.04 5.87 -105.01 -0.62 -2.66 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.17 1.75 7.05 -52.49 -0.37 1.38 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 2.93 5.87 -51.93 -0.30 2.62 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.51 8.04 -51.93 -0.42 0.10 16 43 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 44 H 0.15 1.53 5.80 -52.49 -0.30 1.23 16 45 H 0.14 0.77 7.26 -52.49 -0.38 0.39 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -31.47 373.81 -8.55 -40.03 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.86 Total: -1.21 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.22 Total: -0.62 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.02 Total: -40.16 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.07 Total: -19.85 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.47 -8.55 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225847914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.950 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds