Wall clock time and date at job start Wed Apr 1 2020 03:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99796 * 2 1 4 4 C 1.50701 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.35847 * 120.90464 * 0.02562 * 4 3 2 6 6 C 1.41003 * 119.82133 * 179.97438 * 5 4 3 7 7 O 1.21802 * 119.15175 * 180.02562 * 6 5 4 8 8 O 1.34216 * 121.69009 * 0.02562 * 6 5 4 9 9 C 1.35027 * 121.46914 * 359.97438 * 8 6 5 10 10 C 1.38676 * 120.73940 * 180.31947 * 9 8 6 11 11 C 1.38516 * 119.78362 * 180.20583 * 10 9 8 12 12 O 1.35748 * 119.72931 * 179.77423 * 11 10 9 13 13 C 1.42899 * 117.00365 * 173.99489 * 12 11 10 14 14 H 1.09000 * 110.63923 * 330.76901 * 13 12 11 15 15 C 1.55153 * 110.72126 * 207.61948 * 13 12 11 16 16 C 1.54910 * 101.58085 * 205.95507 * 15 13 12 17 17 N 1.47413 * 104.83218 * 37.01321 * 16 15 13 18 18 C 1.36942 * 125.64760 * 155.82507 * 17 16 15 19 19 H 1.08000 * 119.99817 * 180.02562 * 18 17 16 20 20 C 1.38806 * 119.99944 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00331 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00061 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46864 * 59.99865 * 22 20 18 24 24 H 1.48498 * 109.47324 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47083 * 300.00183 * 22 20 18 26 26 C 1.47023 * 108.70412 * 335.86743 * 17 16 15 27 27 C 1.39368 * 120.54518 * 359.48466 * 11 10 9 28 28 C 1.36463 * 120.43242 * 0.24127 * 27 11 10 29 29 C 1.39968 * 119.79175 * 0.02562 * 28 27 11 30 30 H 1.08997 * 109.46909 * 299.99513 * 1 2 3 31 31 H 1.08993 * 109.47014 * 60.00069 * 1 2 3 32 32 H 1.09007 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46916 * 59.99993 * 3 2 1 34 34 H 1.08997 * 109.47303 * 300.00524 * 3 2 1 35 35 H 1.08000 * 120.08628 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.10767 * 359.96988 * 10 9 8 37 37 H 1.08995 * 111.00707 * 324.03291 * 15 13 12 38 38 H 1.09002 * 111.00169 * 87.87842 * 15 13 12 39 39 H 1.09001 * 110.36123 * 155.85309 * 16 15 13 40 40 H 1.08996 * 110.36803 * 278.05610 * 16 15 13 41 41 H 0.96999 * 120.00423 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.88243 * 241.64479 * 26 17 16 43 43 H 1.09004 * 109.88066 * 120.47844 * 26 17 16 44 44 H 1.07999 * 119.78829 * 180.25381 * 27 11 10 45 45 H 1.07999 * 120.11218 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1161 -0.0306 0.0006 6 6 5.5235 -0.1153 0.0006 7 8 6.0519 -1.2128 0.0001 8 8 6.2960 0.9823 0.0013 9 6 5.7598 2.2216 0.0013 10 6 6.5723 3.3454 -0.0047 11 6 6.0012 4.6073 -0.0002 12 8 6.7975 5.7066 -0.0014 13 6 6.1522 6.9752 -0.1298 14 1 5.2280 6.8801 -0.6997 15 6 7.1012 8.0094 -0.7909 16 6 6.5430 9.3433 -0.2352 17 7 6.1433 9.0371 1.1503 18 6 6.0380 9.9453 2.1698 19 1 5.7364 9.6194 3.1543 20 6 6.3190 11.2847 1.9378 21 7 6.6861 11.6820 0.7380 22 14 6.1747 12.5237 3.3284 23 1 7.1024 12.1472 4.4251 24 1 6.5267 13.8758 2.8252 25 1 4.7808 12.5330 3.8404 26 6 5.8774 7.5950 1.2565 27 6 4.6156 4.7577 -0.0004 28 6 3.8015 3.6626 -0.0002 29 6 4.3614 2.3798 0.0009 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.5194 -0.9308 0.0005 36 1 7.6468 3.2370 -0.0090 37 1 8.1317 7.8540 -0.4718 38 1 7.0209 7.9746 -1.8774 39 1 7.3160 10.1118 -0.2461 40 1 5.6804 9.6658 -0.8183 41 1 6.8820 12.6180 0.5758 42 1 4.8372 7.4296 1.5369 43 1 6.5392 7.1498 1.9995 44 1 4.1834 5.7474 -0.0010 45 1 2.7285 3.7851 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225847914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:26 Heat of formation + Delta-G solvation = -89.772213 kcal Electronic energy + Delta-G solvation = -29316.844110 eV Core-core repulsion = 25073.290148 eV Total energy + Delta-G solvation = -4243.553962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07064 -41.34186 -39.63495 -39.14347 -38.48711 -37.50787 -35.55101 -34.26877 -32.13987 -31.25152 -30.32511 -29.43506 -29.04926 -26.91846 -26.50253 -25.32152 -24.39984 -23.19504 -22.23193 -22.02183 -20.49741 -19.41467 -19.03577 -18.68910 -18.20909 -17.98384 -16.97353 -16.91862 -16.81309 -16.71062 -16.47708 -16.44365 -15.82451 -15.57485 -15.52121 -14.90848 -14.79670 -14.42886 -14.30610 -14.18188 -13.92160 -13.76335 -13.60366 -13.39094 -13.06675 -13.00189 -12.82839 -12.70266 -12.45483 -12.22496 -12.13502 -12.07139 -11.90625 -11.74675 -11.49493 -11.34980 -11.06489 -10.75061 -10.52614 -9.98730 -9.16381 -8.92428 -7.79377 -5.24234 -0.84845 -0.11243 0.43162 1.09335 1.48903 1.51201 1.57546 1.69507 2.08509 2.46289 2.50441 2.56062 3.04681 3.30307 3.32036 3.45946 3.52969 3.66041 3.76371 3.79065 3.94257 4.04882 4.10045 4.16351 4.22232 4.36100 4.48322 4.56222 4.61651 4.65091 4.67423 4.70598 4.76795 4.87326 4.90487 4.93872 4.97584 4.98506 5.11365 5.15539 5.31776 5.45395 5.58873 5.77227 6.01159 6.14500 6.22863 6.29755 6.31424 7.08583 7.74468 8.35794 9.22367 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002175 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.917555 B =12872.463232 C =13861.088742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.088 3.912 4 C 0.059 3.941 5 C -0.264 4.264 6 C 0.508 3.492 7 O -0.514 6.514 8 O -0.287 6.287 9 C 0.173 3.827 10 C -0.189 4.189 11 C 0.188 3.812 12 O -0.303 6.303 13 C 0.083 3.917 14 H 0.115 0.885 15 C -0.127 4.127 16 C 0.153 3.847 17 N -0.623 5.623 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.116 3.884 27 C -0.222 4.222 28 C 0.005 3.995 29 C -0.195 4.195 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.006 0.994 41 H 0.249 0.751 42 H 0.045 0.955 43 H 0.025 0.975 44 H 0.159 0.841 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 -18.685 -4.833 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.013 3.987 4 C 0.058 3.942 5 C -0.283 4.283 6 C 0.361 3.639 7 O -0.406 6.406 8 O -0.199 6.199 9 C 0.129 3.871 10 C -0.208 4.208 11 C 0.140 3.860 12 O -0.215 6.215 13 C 0.027 3.973 14 H 0.132 0.868 15 C -0.165 4.165 16 C 0.029 3.971 17 N -0.351 5.351 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.240 4.240 28 C -0.013 4.013 29 C -0.196 4.196 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.024 0.976 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.176 0.824 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.318 -19.162 -4.777 23.820 hybrid contribution 0.187 0.921 0.752 1.204 sum -13.131 -18.241 -4.025 22.834 Atomic orbital electron populations 1.22985 0.78254 1.04132 1.01616 1.87840 1.22242 1.27214 1.95862 1.21585 0.86025 0.86349 1.04754 1.21458 0.96415 0.90567 0.85723 1.22141 0.91401 1.01412 1.13371 1.19637 0.88271 0.81408 0.74543 1.90938 1.77222 1.22769 1.49706 1.83468 1.44645 1.14222 1.77540 1.18657 0.91248 0.81296 0.95934 1.19481 1.01364 0.87197 1.12781 1.19019 0.90255 0.86280 0.90405 1.86151 1.36047 1.13503 1.85821 1.23618 0.97615 0.79439 0.96633 0.86770 1.23059 0.98957 0.93686 1.00793 1.21773 0.97909 0.94302 0.83165 1.44628 1.80166 1.02581 1.07716 1.19376 1.38894 0.88319 0.90418 0.90126 1.25597 1.01923 0.98739 0.99282 1.69979 1.53366 1.15182 1.21098 0.85145 0.78088 0.77768 0.78271 1.20629 1.21947 1.20188 1.21815 0.98567 0.85020 0.95580 1.21404 0.91541 1.02184 1.08898 1.21037 1.02072 0.87890 0.90273 1.18854 0.90516 0.95139 1.15059 0.92417 0.92289 0.88799 0.87398 0.87163 0.81031 0.83378 0.91500 0.88187 0.90378 0.97624 0.94118 0.93722 0.95712 0.82376 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.41 -4.92 9.25 -148.98 -1.38 -6.30 16 3 C 0.09 0.72 5.17 71.24 0.37 1.09 16 4 C 0.06 0.93 6.08 -18.28 -0.11 0.82 16 5 C -0.26 -5.61 9.30 22.39 0.21 -5.41 16 6 C 0.51 14.40 7.89 68.50 0.54 14.94 16 7 O -0.51 -17.98 17.91 18.94 0.34 -17.64 16 8 O -0.29 -8.05 9.82 14.71 0.14 -7.91 16 9 C 0.17 4.07 6.76 22.98 0.16 4.23 16 10 C -0.19 -4.52 9.94 22.44 0.22 -4.30 16 11 C 0.19 4.41 6.68 22.61 0.15 4.56 16 12 O -0.30 -8.62 9.86 -90.73 -0.89 -9.51 16 13 C 0.08 2.46 2.76 31.78 0.09 2.54 16 14 H 0.11 2.72 6.00 -2.39 -0.01 2.70 16 15 C -0.13 -4.27 6.81 31.99 0.22 -4.05 16 16 C 0.15 6.93 5.89 86.86 0.51 7.44 16 17 N -0.62 -30.10 3.39 -692.02 -2.35 -32.44 16 18 C -0.24 -12.90 10.27 84.03 0.86 -12.04 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 21 N -0.95 -53.79 10.09 21.65 0.22 -53.57 16 22 Si 0.98 43.79 29.55 68.60 2.03 45.82 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 26 C 0.12 4.33 6.96 86.73 0.60 4.93 16 27 C -0.22 -3.91 8.89 22.13 0.20 -3.72 16 28 C 0.00 0.06 9.46 22.27 0.21 0.27 16 29 C -0.19 -3.41 5.87 -20.11 -0.12 -3.52 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.17 3.50 7.05 -2.91 -0.02 3.48 16 36 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.08 4.13 5.87 -2.39 -0.01 4.11 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 43 H 0.02 0.99 8.06 -2.38 -0.02 0.97 16 44 H 0.16 2.50 5.80 -2.91 -0.02 2.49 16 45 H 0.19 0.70 7.26 -2.91 -0.02 0.68 16 Total: -1.00 -72.03 373.81 4.95 -67.08 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.02 Total: 8.22 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.82 Total: 6.25 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.13 Total: -86.01 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.79 Total: -41.35 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.03 4.95 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225847914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.697 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds