Wall clock time and date at job start Wed Apr 1 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47208 * 2 1 4 4 C 1.34234 * 117.00115 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99831 * 180.02562 * 4 3 2 7 7 C 1.53010 * 109.46921 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46954 * 55.00063 * 7 6 4 9 9 C 1.50695 * 109.46870 * 175.00290 * 7 6 4 10 10 H 1.08006 * 119.99970 * 234.63355 * 9 7 6 11 11 C 1.37876 * 120.00515 * 54.63257 * 9 7 6 12 12 N 1.31513 * 119.99713 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 120.00290 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47028 * 60.00304 * 13 11 9 15 15 H 1.48504 * 109.47358 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47255 * 299.99963 * 13 11 9 17 17 O 1.42900 * 109.46781 * 294.99846 * 7 6 4 18 18 C 1.36168 * 116.99810 * 156.12339 * 17 7 6 19 19 C 1.35182 * 119.98748 * 99.46254 * 18 17 7 20 20 C 1.50706 * 118.79583 * 359.97438 * 19 18 17 21 21 N 1.35840 * 122.41267 * 180.25820 * 19 18 17 22 22 H 0.97006 * 119.18152 * 179.72430 * 21 19 18 23 23 C 1.37569 * 121.63547 * 359.43446 * 21 19 18 24 24 C 1.39248 * 121.09887 * 180.28039 * 23 21 19 25 25 C 1.37723 * 119.70923 * 180.26958 * 24 23 21 26 26 C 1.38851 * 120.71649 * 0.02562 * 25 24 23 27 27 C 1.36656 * 120.54975 * 359.93256 * 26 25 24 28 28 C 1.39570 * 119.67859 * 0.09140 * 27 26 25 29 29 C 1.41747 * 119.98377 * 279.44079 * 18 17 7 30 30 O 1.22042 * 121.10117 * 0.04670 * 29 18 17 31 31 H 1.09002 * 109.47379 * 59.99563 * 1 2 3 32 32 H 1.09006 * 109.47494 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47308 * 299.99772 * 1 2 3 34 34 H 1.09003 * 109.47308 * 240.00228 * 2 1 3 35 35 H 1.09002 * 109.47379 * 120.00437 * 2 1 3 36 36 H 1.08995 * 109.47337 * 60.00898 * 6 4 3 37 37 H 1.09000 * 109.47621 * 300.00050 * 6 4 3 38 38 H 0.97000 * 120.00134 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47084 * 84.58699 * 20 19 18 40 40 H 1.08999 * 109.46803 * 324.58774 * 20 19 18 41 41 H 1.09003 * 109.47081 * 204.59201 * 20 19 18 42 42 H 1.07998 * 120.15126 * 0.24684 * 24 23 21 43 43 H 1.08000 * 119.64335 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.72488 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.16570 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8573 0.0010 8 1 5.7806 2.2500 -0.8411 9 6 6.0243 4.2445 -0.1221 10 1 6.7274 4.4694 -0.9105 11 6 5.6535 5.2267 0.7716 12 7 4.7977 4.9528 1.7319 13 14 6.3676 6.9460 0.6194 14 1 6.0120 7.5141 -0.7058 15 1 5.8135 7.8092 1.6933 16 1 7.8454 6.8816 0.7500 17 8 5.8945 2.2632 1.2218 18 6 7.1168 1.6633 1.2070 19 6 8.1964 2.3174 1.6909 20 6 8.0161 3.7094 2.2395 21 7 9.4388 1.7682 1.6956 22 1 10.1815 2.2813 2.0507 23 6 9.6690 0.5000 1.2146 24 6 10.9463 -0.0543 1.2301 25 6 11.1452 -1.3244 0.7361 26 6 10.0854 -2.0593 0.2216 27 6 8.8236 -1.5352 0.1974 28 6 8.5997 -0.2496 0.6925 29 6 7.2566 0.3530 0.6848 30 8 6.2953 -0.2553 0.2426 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5845 3.4692 0.8912 37 1 3.5851 3.4698 -0.8888 38 1 4.5365 5.6439 2.3605 39 1 7.6976 3.6514 3.2802 40 1 7.2593 4.2344 1.6566 41 1 8.9611 4.2493 2.1781 42 1 11.7774 0.5094 1.6274 43 1 12.1364 -1.7531 0.7483 44 1 10.2596 -3.0537 -0.1620 45 1 8.0037 -2.1124 -0.2038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228962233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:26 Heat of formation + Delta-G solvation = -110.593481 kcal Electronic energy + Delta-G solvation = -31398.186106 eV Core-core repulsion = 27153.729266 eV Total energy + Delta-G solvation = -4244.456840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64113 -39.37202 -37.97590 -37.05489 -36.26917 -35.36014 -33.22471 -31.72844 -31.32110 -30.91888 -30.00304 -28.62537 -27.20291 -26.08235 -23.28585 -22.79977 -22.29801 -21.62440 -21.38882 -19.60322 -18.28144 -17.93265 -17.01756 -16.64181 -16.20940 -15.86092 -15.45530 -15.17222 -15.02449 -14.70889 -14.56328 -14.34315 -13.85540 -13.64961 -13.43286 -13.17346 -12.94766 -12.75130 -12.57160 -12.37602 -12.12577 -11.95427 -11.80592 -11.69561 -11.51590 -11.30798 -11.26945 -11.17493 -11.01185 -10.85325 -10.72491 -10.60145 -10.28962 -9.78812 -9.44636 -9.18100 -9.01675 -8.86028 -8.67676 -8.33564 -7.92487 -6.84792 -6.22134 -4.40058 1.10613 1.38862 2.26468 3.12008 3.20876 3.23001 3.29149 3.46752 3.50315 3.64089 4.17485 4.39419 4.73315 4.86462 4.96015 5.02804 5.23197 5.28717 5.36452 5.39472 5.44918 5.50004 5.58076 5.75328 5.83233 5.91812 6.07065 6.09742 6.16849 6.18810 6.28521 6.30317 6.36985 6.38866 6.57776 6.60917 6.82117 6.89401 7.02869 7.09719 7.20673 7.35598 7.50339 7.53467 7.63277 7.74069 8.06392 8.54069 8.63547 9.00822 9.16731 9.37446 10.74800 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.005238 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.463221 B = 5343.878864 C = 8404.682887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.374 6.374 4 C 0.434 3.566 5 O -0.470 6.470 6 C -0.099 4.099 7 C 0.233 3.767 8 H 0.018 0.982 9 C -0.552 4.552 10 H 0.063 0.937 11 C 0.083 3.917 12 N -0.854 5.854 13 Si 0.882 3.118 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.273 1.273 17 O -0.292 6.292 18 C -0.042 4.042 19 C 0.146 3.854 20 C -0.145 4.145 21 N -0.607 5.607 22 H 0.411 0.589 23 C 0.203 3.797 24 C -0.186 4.186 25 C -0.063 4.063 26 C -0.178 4.178 27 C -0.027 4.027 28 C -0.201 4.201 29 C 0.381 3.619 30 O -0.445 6.445 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.047 0.953 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -6.222 0.484 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.293 6.293 4 C 0.276 3.724 5 O -0.354 6.354 6 C -0.136 4.136 7 C 0.178 3.822 8 H 0.036 0.964 9 C -0.589 4.589 10 H 0.081 0.919 11 C -0.123 4.123 12 N -0.490 5.490 13 Si 0.708 3.292 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.198 1.198 17 O -0.207 6.207 18 C -0.094 4.094 19 C 0.041 3.959 20 C -0.201 4.201 21 N -0.220 5.220 22 H 0.247 0.753 23 C 0.098 3.902 24 C -0.208 4.208 25 C -0.082 4.082 26 C -0.198 4.198 27 C -0.045 4.045 28 C -0.206 4.206 29 C 0.265 3.735 30 O -0.324 6.324 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.066 0.934 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.817 -6.752 0.544 8.929 hybrid contribution 1.054 1.025 0.051 1.471 sum 6.871 -5.727 0.595 8.964 Atomic orbital electron populations 1.21766 0.93736 1.02026 1.03076 1.22740 0.94374 0.82322 1.01850 1.86553 1.26870 1.30452 1.85463 1.24978 0.79503 0.94839 0.73111 1.90864 1.59022 1.42597 1.42922 1.21761 0.96647 0.88261 1.06941 1.19593 0.88604 0.91111 0.82842 0.96433 1.21557 1.27944 0.94852 1.14593 0.91896 1.25002 0.94326 0.98385 0.94610 1.69822 1.30433 1.33660 1.15075 0.86847 0.79771 0.84155 0.78409 1.19732 1.20723 1.19774 1.86298 1.26914 1.71209 1.36264 1.18885 0.88087 0.93157 1.09232 1.20483 0.83107 0.94846 0.97507 1.21621 1.04561 0.90800 1.03098 1.41099 1.09053 1.13564 1.58283 0.75332 1.17943 0.94006 0.84660 0.93640 1.20559 0.94408 0.97576 1.08210 1.20958 0.98821 0.93258 0.95207 1.20711 0.92874 1.00912 1.05262 1.20818 0.97202 0.93028 0.93467 1.20548 0.95594 0.96777 1.07687 1.19306 0.87102 0.88011 0.79129 1.90856 1.39868 1.63324 1.38328 0.91910 0.91120 0.91777 0.92174 0.91996 0.83871 0.89065 0.92081 0.91088 0.82901 0.93390 0.85576 0.85834 0.85994 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.29 37.16 0.38 -1.50 16 2 C 0.06 1.05 6.19 37.16 0.23 1.28 16 3 O -0.37 -7.74 10.22 -39.27 -0.40 -8.14 16 4 C 0.43 10.25 7.84 36.00 0.28 10.53 16 5 O -0.47 -12.29 12.02 -28.62 -0.34 -12.64 16 6 C -0.10 -2.36 5.13 -27.88 -0.14 -2.50 16 7 C 0.23 5.93 1.88 -27.88 -0.05 5.87 16 8 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 9 C -0.55 -13.75 7.32 -34.44 -0.25 -14.00 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.08 1.98 3.20 -17.82 -0.06 1.93 16 12 N -0.85 -21.17 10.77 55.43 0.60 -20.57 16 13 Si 0.88 18.54 29.24 -169.99 -4.97 13.57 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 O -0.29 -7.57 7.68 -45.95 -0.35 -7.92 16 18 C -0.04 -0.99 5.47 -39.33 -0.22 -1.20 16 19 C 0.15 2.87 6.80 -81.90 -0.56 2.31 16 20 C -0.14 -2.75 9.69 36.01 0.35 -2.40 16 21 N -0.61 -9.39 5.31 -6.97 -0.04 -9.42 16 22 H 0.41 4.72 8.55 -40.82 -0.35 4.37 16 23 C 0.20 3.22 6.66 -84.01 -0.56 2.66 16 24 C -0.19 -2.28 9.92 -39.39 -0.39 -2.67 16 25 C -0.06 -0.72 10.01 -39.54 -0.40 -1.12 16 26 C -0.18 -2.27 9.97 -39.93 -0.40 -2.66 16 27 C -0.03 -0.43 9.61 -39.66 -0.38 -0.81 16 28 C -0.20 -3.79 5.89 -104.85 -0.62 -4.41 16 29 C 0.38 8.87 6.89 -34.60 -0.24 8.63 16 30 O -0.45 -11.63 14.03 -24.76 -0.35 -11.98 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.06 1.09 8.13 -51.93 -0.42 0.66 16 36 H 0.14 3.62 5.86 -51.93 -0.30 3.32 16 37 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.15 3.41 2.48 -51.93 -0.13 3.29 16 41 H 0.05 0.74 8.04 -51.93 -0.42 0.33 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.13 2.16 7.79 -52.49 -0.41 1.75 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -31.45 371.07 -9.06 -40.51 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.78 Total: 11.07 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.01 Total: -0.07 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.56 Total: -29.99 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.45 Total: -40.68 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.97 Total: 13.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.45 -9.06 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228962233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.079 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds