Wall clock time and date at job start Wed Apr 1 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47208 * 2 1 4 4 C 1.34234 * 117.00115 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99831 * 180.02562 * 4 3 2 7 7 C 1.53010 * 109.46921 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46954 * 55.00063 * 7 6 4 9 9 C 1.50695 * 109.46870 * 175.00290 * 7 6 4 10 10 H 1.08006 * 119.99970 * 234.63355 * 9 7 6 11 11 C 1.37876 * 120.00515 * 54.63257 * 9 7 6 12 12 N 1.31513 * 119.99713 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 120.00290 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47028 * 60.00304 * 13 11 9 15 15 H 1.48504 * 109.47358 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47255 * 299.99963 * 13 11 9 17 17 O 1.42900 * 109.46781 * 294.99846 * 7 6 4 18 18 C 1.36168 * 116.99810 * 156.12339 * 17 7 6 19 19 C 1.35182 * 119.98748 * 99.46254 * 18 17 7 20 20 C 1.50706 * 118.79583 * 359.97438 * 19 18 17 21 21 N 1.35840 * 122.41267 * 180.25820 * 19 18 17 22 22 H 0.97006 * 119.18152 * 179.72430 * 21 19 18 23 23 C 1.37569 * 121.63547 * 359.43446 * 21 19 18 24 24 C 1.39248 * 121.09887 * 180.28039 * 23 21 19 25 25 C 1.37723 * 119.70923 * 180.26958 * 24 23 21 26 26 C 1.38851 * 120.71649 * 0.02562 * 25 24 23 27 27 C 1.36656 * 120.54975 * 359.93256 * 26 25 24 28 28 C 1.39570 * 119.67859 * 0.09140 * 27 26 25 29 29 C 1.41747 * 119.98377 * 279.44079 * 18 17 7 30 30 O 1.22042 * 121.10117 * 0.04670 * 29 18 17 31 31 H 1.09002 * 109.47379 * 59.99563 * 1 2 3 32 32 H 1.09006 * 109.47494 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47308 * 299.99772 * 1 2 3 34 34 H 1.09003 * 109.47308 * 240.00228 * 2 1 3 35 35 H 1.09002 * 109.47379 * 120.00437 * 2 1 3 36 36 H 1.08995 * 109.47337 * 60.00898 * 6 4 3 37 37 H 1.09000 * 109.47621 * 300.00050 * 6 4 3 38 38 H 0.97000 * 120.00134 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47084 * 84.58699 * 20 19 18 40 40 H 1.08999 * 109.46803 * 324.58774 * 20 19 18 41 41 H 1.09003 * 109.47081 * 204.59201 * 20 19 18 42 42 H 1.07998 * 120.15126 * 0.24684 * 24 23 21 43 43 H 1.08000 * 119.64335 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.72488 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.16570 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8573 0.0010 8 1 5.7806 2.2500 -0.8411 9 6 6.0243 4.2445 -0.1221 10 1 6.7274 4.4694 -0.9105 11 6 5.6535 5.2267 0.7716 12 7 4.7977 4.9528 1.7319 13 14 6.3676 6.9460 0.6194 14 1 6.0120 7.5141 -0.7058 15 1 5.8135 7.8092 1.6933 16 1 7.8454 6.8816 0.7500 17 8 5.8945 2.2632 1.2218 18 6 7.1168 1.6633 1.2070 19 6 8.1964 2.3174 1.6909 20 6 8.0161 3.7094 2.2395 21 7 9.4388 1.7682 1.6956 22 1 10.1815 2.2813 2.0507 23 6 9.6690 0.5000 1.2146 24 6 10.9463 -0.0543 1.2301 25 6 11.1452 -1.3244 0.7361 26 6 10.0854 -2.0593 0.2216 27 6 8.8236 -1.5352 0.1974 28 6 8.5997 -0.2496 0.6925 29 6 7.2566 0.3530 0.6848 30 8 6.2953 -0.2553 0.2426 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5845 3.4692 0.8912 37 1 3.5851 3.4698 -0.8888 38 1 4.5365 5.6439 2.3605 39 1 7.6976 3.6514 3.2802 40 1 7.2593 4.2344 1.6566 41 1 8.9611 4.2493 2.1781 42 1 11.7774 0.5094 1.6274 43 1 12.1364 -1.7531 0.7483 44 1 10.2596 -3.0537 -0.1620 45 1 8.0037 -2.1124 -0.2038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228962233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:25 Heat of formation + Delta-G solvation = -128.304401 kcal Electronic energy + Delta-G solvation = -31398.954110 eV Core-core repulsion = 27153.729266 eV Total energy + Delta-G solvation = -4245.224843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04006 -41.18755 -39.48815 -38.60510 -37.84127 -37.12297 -35.06669 -33.22567 -32.68050 -32.20372 -31.67095 -30.06248 -28.70200 -27.90418 -24.81551 -24.15760 -23.51454 -23.22709 -22.89685 -21.42597 -19.84263 -19.25588 -18.64585 -18.20345 -17.94613 -17.55529 -17.16256 -16.76174 -16.56583 -16.28021 -16.23924 -15.57283 -15.13513 -15.02845 -14.85474 -14.71213 -14.60923 -14.36042 -13.88425 -13.87710 -13.61292 -13.57357 -13.30612 -13.20509 -12.86658 -12.80277 -12.77634 -12.57698 -12.43242 -12.41089 -12.27460 -12.19090 -11.98849 -11.43699 -11.37512 -11.06798 -10.77366 -10.48932 -10.03247 -9.73234 -9.63495 -8.38049 -8.06423 -6.32434 -0.14896 0.10526 0.85743 1.45951 1.51175 1.56435 1.57631 1.95938 1.98692 2.18115 2.42261 2.95497 3.16973 3.33152 3.66802 3.74135 3.97899 3.99843 4.06695 4.16862 4.21801 4.30651 4.35515 4.40099 4.42343 4.52857 4.64731 4.76151 4.81999 4.89775 4.91742 4.93972 4.98229 5.06738 5.13391 5.14809 5.24271 5.47287 5.49087 5.62150 5.63944 5.65990 5.80854 5.86121 6.11193 6.15421 6.40028 6.65502 6.94106 7.17352 7.33646 7.56436 8.91435 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.005238 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.463221 B = 5343.878864 C = 8404.682887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 O -0.374 6.374 4 C 0.434 3.566 5 O -0.498 6.498 6 C -0.094 4.094 7 C 0.239 3.761 8 H -0.023 1.023 9 C -0.567 4.567 10 H 0.053 0.947 11 C 0.062 3.938 12 N -0.875 5.875 13 Si 0.940 3.060 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.258 1.258 17 O -0.311 6.311 18 C -0.112 4.112 19 C 0.185 3.815 20 C -0.149 4.149 21 N -0.585 5.585 22 H 0.435 0.565 23 C 0.185 3.815 24 C -0.165 4.165 25 C -0.049 4.049 26 C -0.159 4.159 27 C -0.055 4.055 28 C -0.232 4.232 29 C 0.361 3.639 30 O -0.508 6.508 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 -5.955 1.453 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.277 3.723 5 O -0.384 6.384 6 C -0.132 4.132 7 C 0.185 3.815 8 H -0.005 1.005 9 C -0.604 4.604 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.511 5.511 13 Si 0.764 3.236 14 H -0.201 1.201 15 H -0.202 1.202 16 H -0.182 1.182 17 O -0.226 6.226 18 C -0.163 4.163 19 C 0.076 3.924 20 C -0.206 4.206 21 N -0.200 5.200 22 H 0.275 0.725 23 C 0.081 3.919 24 C -0.186 4.186 25 C -0.067 4.067 26 C -0.178 4.178 27 C -0.074 4.074 28 C -0.237 4.237 29 C 0.250 3.750 30 O -0.392 6.392 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.191 0.809 43 H 0.193 0.807 44 H 0.172 0.828 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.790 -6.498 1.528 11.849 hybrid contribution 0.031 0.797 -0.220 0.827 sum 9.821 -5.701 1.308 11.431 Atomic orbital electron populations 1.21780 0.89638 1.04320 1.03699 1.23136 0.97485 0.80281 1.01277 1.86523 1.24999 1.32867 1.84843 1.24911 0.80362 0.94427 0.72563 1.90885 1.59944 1.43374 1.44178 1.21672 0.96334 0.88541 1.06630 1.19433 0.89203 0.90902 0.81986 1.00521 1.21469 1.28709 0.95003 1.15261 0.92858 1.25457 0.94098 1.01142 0.93636 1.69926 1.31014 1.34710 1.15435 0.85937 0.79867 0.79757 0.78076 1.20085 1.20223 1.18244 1.86233 1.28819 1.71706 1.35882 1.19245 0.88697 0.94369 1.14031 1.20476 0.83620 0.94587 0.93755 1.21617 1.05978 0.90302 1.02674 1.41045 1.08172 1.13783 1.57038 0.72473 1.18222 0.94887 0.84519 0.94287 1.21113 0.93430 0.97959 1.06051 1.21587 1.00389 0.92403 0.92349 1.21143 0.91389 1.02170 1.03102 1.20842 0.98787 0.92556 0.95200 1.20452 0.94305 0.98464 1.10470 1.19852 0.88702 0.88195 0.78293 1.90791 1.41931 1.64622 1.41846 0.90997 0.87934 0.91387 0.92427 0.93088 0.84979 0.88225 0.91875 0.90469 0.85658 0.89206 0.80921 0.80663 0.82753 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 10.29 71.98 0.74 -2.65 16 2 C 0.05 1.86 6.19 71.98 0.45 2.31 16 3 O -0.37 -16.41 10.22 -51.45 -0.53 -16.93 16 4 C 0.43 22.32 7.84 71.23 0.56 22.88 16 5 O -0.50 -28.68 12.02 31.42 0.38 -28.30 16 6 C -0.09 -4.87 5.13 29.85 0.15 -4.72 16 7 C 0.24 13.24 1.88 29.85 0.06 13.30 16 8 H -0.02 -1.43 7.74 -2.39 -0.02 -1.44 16 9 C -0.57 -29.69 7.32 25.60 0.19 -29.51 16 10 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 11 C 0.06 3.00 3.20 84.65 0.27 3.27 16 12 N -0.88 -44.61 10.77 21.45 0.23 -44.38 16 13 Si 0.94 37.77 29.24 68.60 2.01 39.78 16 14 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 15 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 17 O -0.31 -17.44 7.68 -70.91 -0.54 -17.99 16 18 C -0.11 -5.64 5.47 22.43 0.12 -5.52 16 19 C 0.19 7.31 6.80 41.24 0.28 7.59 16 20 C -0.15 -5.52 9.69 71.24 0.69 -4.83 16 21 N -0.59 -16.86 5.31 -175.96 -0.93 -17.79 16 22 H 0.43 8.10 8.55 -92.70 -0.79 7.31 16 23 C 0.19 5.51 6.66 39.07 0.26 5.77 16 24 C -0.17 -3.14 9.92 22.39 0.22 -2.92 16 25 C -0.05 -0.81 10.01 22.29 0.22 -0.59 16 26 C -0.16 -3.54 9.97 22.05 0.22 -3.32 16 27 C -0.06 -1.83 9.61 22.22 0.21 -1.62 16 28 C -0.23 -9.09 5.89 -20.01 -0.12 -9.20 16 29 C 0.36 18.37 6.89 25.50 0.18 18.55 16 30 O -0.51 -29.74 14.03 22.89 0.32 -29.41 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 35 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.13 7.16 5.86 -2.39 -0.01 7.14 16 37 H 0.10 4.80 8.14 -2.39 -0.02 4.78 16 38 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.13 5.61 2.48 -2.39 -0.01 5.60 16 41 H 0.09 2.49 8.04 -2.39 -0.02 2.48 16 42 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 45 H 0.11 4.05 7.79 -2.91 -0.02 4.03 16 Total: -1.00 -79.58 371.07 5.88 -73.69 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.25 Total: 32.55 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 4.70 Total: 8.78 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.70 Total: -62.17 kcal Atomic # 8 Polarization: -92.26 SS G_CDS: -0.37 Total: -92.64 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.01 Total: 39.78 kcal Total: -79.58 5.88 -73.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228962233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.611 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds