Wall clock time and date at job start Wed Apr 1 2020 03:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 114.00020 * 2 1 4 4 O 1.42899 * 109.46891 * 72.45010 * 3 2 1 5 5 C 1.42894 * 114.00315 * 63.59989 * 4 3 2 6 6 C 1.50696 * 109.46839 * 192.44906 * 3 2 1 7 7 C 1.38403 * 120.47084 * 19.68810 * 6 3 2 8 8 C 1.50700 * 120.73716 * 359.97438 * 7 6 3 9 9 O 1.42905 * 109.47119 * 179.71683 * 8 7 6 10 10 C 1.38769 * 118.51892 * 179.72587 * 7 6 3 11 11 C 1.38282 * 119.37841 * 0.24716 * 10 7 6 12 12 N 1.31738 * 120.89966 * 0.02562 * 11 10 7 13 13 C 1.32732 * 121.60449 * 359.97438 * 12 11 10 14 14 C 1.48206 * 119.73197 * 180.02562 * 13 12 11 15 15 C 1.39332 * 120.16756 * 127.67945 * 14 13 12 16 16 C 1.37986 * 119.94597 * 180.02562 * 15 14 13 17 17 C 1.38467 * 120.27685 * 359.97438 * 16 15 14 18 18 C 1.38088 * 120.33357 * 0.02562 * 17 16 15 19 19 C 1.38780 * 120.05299 * 359.71161 * 18 17 16 20 20 O 1.35634 * 120.14112 * 180.27746 * 19 18 17 21 21 C 1.34813 * 117.00041 * 6.32377 * 20 19 18 22 22 H 1.08001 * 119.99951 * 5.36775 * 21 20 19 23 23 C 1.38659 * 119.99859 * 185.37159 * 21 20 19 24 24 N 1.31548 * 120.00431 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99763 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47078 * 59.99934 * 25 23 21 27 27 H 1.48500 * 109.47152 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47220 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.46774 * 304.96213 * 1 2 3 30 30 H 1.09001 * 109.46962 * 64.95546 * 1 2 3 31 31 H 1.08992 * 109.47132 * 184.95887 * 1 2 3 32 32 H 1.09001 * 109.46869 * 312.45080 * 3 2 1 33 33 H 1.09001 * 109.47054 * 304.76591 * 5 4 3 34 34 H 1.09005 * 109.47256 * 64.76136 * 5 4 3 35 35 H 1.09000 * 109.47264 * 184.76455 * 5 4 3 36 36 H 1.08998 * 109.47089 * 59.72399 * 8 7 6 37 37 H 1.08994 * 109.47788 * 299.72096 * 8 7 6 38 38 H 0.96701 * 114.00286 * 179.97438 * 9 8 7 39 39 H 1.08000 * 120.30678 * 180.23050 * 10 7 6 40 40 H 1.08003 * 119.54779 * 180.02562 * 11 10 7 41 41 H 1.08000 * 120.02505 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.86224 * 179.97438 * 16 15 14 43 43 H 1.07996 * 119.83222 * 179.97438 * 17 16 15 44 44 H 1.08002 * 119.97587 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8329 1.9059 1.2846 5 6 2.5033 1.2204 2.3441 6 6 3.4820 1.2000 -0.3063 7 6 3.9916 0.0701 -0.9221 8 6 3.0880 -1.0760 -1.2978 9 8 3.8588 -2.1059 -1.9202 10 6 5.3521 0.0183 -1.1904 11 6 6.1551 1.0859 -0.8334 12 7 5.6458 2.1479 -0.2432 13 6 4.3501 2.2369 0.0311 14 6 3.8213 3.4514 0.6958 15 6 2.7411 4.1373 0.1446 16 6 2.2527 5.2678 0.7670 17 6 2.8316 5.7246 1.9391 18 6 3.9027 5.0538 2.4954 19 6 4.4014 3.9122 1.8839 20 8 5.4498 3.2487 2.4318 21 6 5.8788 3.6715 3.6379 22 1 5.3383 4.4456 4.1624 23 6 7.0139 3.1125 4.2050 24 7 7.6720 2.1693 3.5665 25 14 7.6088 3.6989 5.8760 26 1 6.5487 3.4641 6.8891 27 1 8.8321 2.9484 6.2573 28 1 7.9180 5.1498 5.8101 29 1 -0.3633 0.5889 0.8422 30 1 -0.3633 0.4350 -0.9311 31 1 -0.3633 -1.0237 0.0888 32 1 1.5244 1.9195 -0.7583 33 1 2.1895 0.1767 2.3575 34 1 3.5807 1.2738 2.1871 35 1 2.2512 1.6878 3.2960 36 1 2.3244 -0.7242 -1.9916 37 1 2.6102 -1.4711 -0.4014 38 1 3.3408 -2.8770 -2.1888 39 1 5.7797 -0.8479 -1.6733 40 1 7.2143 1.0487 -1.0414 41 1 2.2868 3.7848 -0.7697 42 1 1.4156 5.7986 0.3383 43 1 2.4439 6.6104 2.4200 44 1 4.3500 5.4154 3.4095 45 1 8.4659 1.7780 3.9635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:03 Heat of formation + Delta-G solvation = -83.277027 kcal Electronic energy + Delta-G solvation = -32198.419583 eV Core-core repulsion = 27955.147273 eV Total energy + Delta-G solvation = -4243.272310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57958 -38.75413 -38.34998 -36.84963 -36.25188 -35.77653 -32.68388 -32.30987 -32.05078 -29.25367 -28.71438 -27.42152 -26.79719 -26.25247 -25.27249 -24.33246 -22.63741 -21.55209 -21.21875 -20.18701 -17.93642 -17.72802 -17.07487 -16.93573 -16.73891 -16.46267 -15.75305 -15.21707 -14.87175 -14.65082 -14.62051 -14.22772 -14.17447 -14.04627 -13.86518 -13.57286 -13.29127 -13.21572 -13.14271 -12.79074 -12.44647 -12.26346 -11.82626 -11.68816 -11.63074 -11.30990 -11.23114 -10.89542 -10.81205 -10.70279 -10.49749 -10.42168 -10.28692 -10.08687 -9.58777 -9.36828 -8.91548 -8.85066 -8.77694 -8.62400 -7.78305 -7.07627 -6.39079 -3.97011 1.38168 1.65536 2.34349 2.50250 3.15196 3.16687 3.18675 3.54466 3.99431 4.07977 4.20489 4.29685 4.65584 4.87350 4.98742 5.09198 5.16433 5.17595 5.26985 5.36340 5.38027 5.47295 5.51924 5.59261 5.64174 5.71090 5.80307 5.85596 5.86127 6.04297 6.05623 6.14630 6.23823 6.31259 6.42894 6.47524 6.58778 6.74144 6.78462 6.87102 7.09046 7.13758 7.31758 7.42573 7.44107 7.52444 7.64169 7.86612 8.02952 8.65323 9.05065 9.77800 10.77211 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004792 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.406923 B = 5841.767561 C = 7009.905762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.296 3.704 4 O -0.368 6.368 5 C 0.034 3.966 6 C -0.182 4.182 7 C -0.023 4.023 8 C 0.128 3.872 9 O -0.577 6.577 10 C -0.176 4.176 11 C 0.117 3.883 12 N -0.450 5.450 13 C 0.233 3.767 14 C -0.120 4.120 15 C -0.035 4.035 16 C -0.213 4.213 17 C -0.064 4.064 18 C -0.236 4.236 19 C 0.182 3.818 20 O -0.154 6.154 21 C -0.394 4.394 22 H 0.089 0.911 23 C 0.043 3.957 24 N -0.851 5.851 25 Si 0.936 3.064 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.270 1.270 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.378 0.622 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -5.062 -8.281 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C 0.200 3.800 4 O -0.287 6.287 5 C -0.062 4.062 6 C -0.184 4.184 7 C -0.031 4.031 8 C 0.052 3.948 9 O -0.382 6.382 10 C -0.196 4.196 11 C -0.041 4.041 12 N -0.158 5.158 13 C 0.096 3.904 14 C -0.122 4.122 15 C -0.054 4.054 16 C -0.232 4.232 17 C -0.082 4.082 18 C -0.256 4.256 19 C 0.126 3.874 20 O -0.055 6.055 21 C -0.470 4.470 22 H 0.106 0.894 23 C -0.162 4.162 24 N -0.485 5.485 25 Si 0.761 3.239 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.195 1.195 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.225 0.775 39 H 0.155 0.845 40 H 0.170 0.830 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.144 0.856 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.203 -4.300 -7.934 14.386 hybrid contribution -0.631 -0.762 0.625 1.170 sum -11.834 -5.062 -7.309 14.801 Atomic orbital electron populations 1.22718 0.81060 1.02462 1.00596 1.88108 1.20127 1.29520 1.94194 1.21748 0.89224 0.81828 0.87173 1.88144 1.73023 1.51865 1.15701 1.22671 0.98121 0.95741 0.89628 1.20639 0.95737 0.96164 1.05900 1.19767 0.94556 0.93487 0.95313 1.21096 0.90420 0.86165 0.97168 1.86437 1.39484 1.30778 1.81543 1.21899 0.93583 1.00668 1.03422 1.22833 1.00159 0.88674 0.92442 1.68019 1.12393 1.25500 1.09860 1.19386 0.87787 0.91808 0.91382 1.17292 1.00389 0.97655 0.96914 1.20415 0.93417 0.94179 0.97386 1.20360 1.03813 1.00038 0.99019 1.20766 0.94763 0.97799 0.94887 1.21077 1.01671 0.98843 1.03982 1.19155 0.87725 0.89697 0.90826 1.84049 1.39208 1.49889 1.32386 1.21270 1.10856 1.22832 0.92051 0.89355 1.25238 0.95245 0.96119 0.99598 1.70059 1.17192 1.23583 1.37673 0.85866 0.78487 0.78917 0.80654 1.19619 1.20370 1.19529 0.92978 0.94088 0.89970 0.87912 0.94340 0.92545 0.90008 0.92292 0.89785 0.77501 0.84465 0.82993 0.87864 0.87671 0.87650 0.85567 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.92 101.05 1.10 1.37 16 2 O -0.40 -5.21 5.24 -59.04 -0.31 -5.52 16 3 C 0.30 4.55 2.32 36.00 0.08 4.63 16 4 O -0.37 -6.41 7.54 -59.04 -0.45 -6.85 16 5 C 0.03 0.64 9.73 101.05 0.98 1.62 16 6 C -0.18 -3.29 4.61 -104.14 -0.48 -3.77 16 7 C -0.02 -0.39 5.89 -104.36 -0.61 -1.01 16 8 C 0.13 1.68 5.57 36.01 0.20 1.88 16 9 O -0.58 -6.96 12.24 -35.23 -0.43 -7.39 16 10 C -0.18 -3.06 9.44 -39.37 -0.37 -3.43 16 11 C 0.12 2.28 11.17 -17.58 -0.20 2.08 16 12 N -0.45 -10.32 9.83 -9.79 -0.10 -10.41 16 13 C 0.23 4.98 4.90 -82.96 -0.41 4.58 16 14 C -0.12 -2.60 3.33 -104.73 -0.35 -2.95 16 15 C -0.03 -0.64 7.41 -39.27 -0.29 -0.93 16 16 C -0.21 -3.72 10.03 -39.59 -0.40 -4.12 16 17 C -0.06 -1.18 10.03 -39.55 -0.40 -1.57 16 18 C -0.24 -5.18 9.12 -39.44 -0.36 -5.54 16 19 C 0.18 4.42 6.08 -38.72 -0.24 4.18 16 20 O -0.15 -4.33 8.84 0.45 0.00 -4.33 16 21 C -0.39 -10.92 9.44 30.89 0.29 -10.63 16 22 H 0.09 2.28 5.31 -52.49 -0.28 2.00 16 23 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 24 N -0.85 -24.96 13.67 55.48 0.76 -24.20 16 25 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 H 0.05 0.54 7.86 -51.93 -0.41 0.13 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 1.40 6.94 -51.93 -0.36 1.04 16 33 H 0.04 0.65 7.58 -51.93 -0.39 0.25 16 34 H 0.06 1.27 5.80 -51.93 -0.30 0.97 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.06 0.69 7.72 -51.93 -0.40 0.28 16 37 H 0.08 1.12 6.29 -51.93 -0.33 0.79 16 38 H 0.38 2.58 9.12 45.56 0.42 2.99 16 39 H 0.14 2.15 7.11 -52.49 -0.37 1.77 16 40 H 0.15 2.59 8.06 -52.48 -0.42 2.17 16 41 H 0.10 1.64 6.75 -52.49 -0.35 1.29 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 2.76 5.73 -52.49 -0.30 2.46 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -33.59 366.86 -6.30 -39.89 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.75 Total: 10.19 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.53 Total: -12.51 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.66 Total: -34.61 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.18 Total: -24.09 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.59 -6.30 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.390 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds