Wall clock time and date at job start Wed Apr 1 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 114.00020 * 2 1 4 4 O 1.42899 * 109.46891 * 72.45010 * 3 2 1 5 5 C 1.42894 * 114.00315 * 63.59989 * 4 3 2 6 6 C 1.50696 * 109.46839 * 192.44906 * 3 2 1 7 7 C 1.38403 * 120.47084 * 19.68810 * 6 3 2 8 8 C 1.50700 * 120.73716 * 359.97438 * 7 6 3 9 9 O 1.42905 * 109.47119 * 179.71683 * 8 7 6 10 10 C 1.38769 * 118.51892 * 179.72587 * 7 6 3 11 11 C 1.38282 * 119.37841 * 0.24716 * 10 7 6 12 12 N 1.31738 * 120.89966 * 0.02562 * 11 10 7 13 13 C 1.32732 * 121.60449 * 359.97438 * 12 11 10 14 14 C 1.48206 * 119.73197 * 180.02562 * 13 12 11 15 15 C 1.39332 * 120.16756 * 127.67945 * 14 13 12 16 16 C 1.37986 * 119.94597 * 180.02562 * 15 14 13 17 17 C 1.38467 * 120.27685 * 359.97438 * 16 15 14 18 18 C 1.38088 * 120.33357 * 0.02562 * 17 16 15 19 19 C 1.38780 * 120.05299 * 359.71161 * 18 17 16 20 20 O 1.35634 * 120.14112 * 180.27746 * 19 18 17 21 21 C 1.34813 * 117.00041 * 6.32377 * 20 19 18 22 22 H 1.08001 * 119.99951 * 5.36775 * 21 20 19 23 23 C 1.38659 * 119.99859 * 185.37159 * 21 20 19 24 24 N 1.31548 * 120.00431 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99763 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47078 * 59.99934 * 25 23 21 27 27 H 1.48500 * 109.47152 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47220 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.46774 * 304.96213 * 1 2 3 30 30 H 1.09001 * 109.46962 * 64.95546 * 1 2 3 31 31 H 1.08992 * 109.47132 * 184.95887 * 1 2 3 32 32 H 1.09001 * 109.46869 * 312.45080 * 3 2 1 33 33 H 1.09001 * 109.47054 * 304.76591 * 5 4 3 34 34 H 1.09005 * 109.47256 * 64.76136 * 5 4 3 35 35 H 1.09000 * 109.47264 * 184.76455 * 5 4 3 36 36 H 1.08998 * 109.47089 * 59.72399 * 8 7 6 37 37 H 1.08994 * 109.47788 * 299.72096 * 8 7 6 38 38 H 0.96701 * 114.00286 * 179.97438 * 9 8 7 39 39 H 1.08000 * 120.30678 * 180.23050 * 10 7 6 40 40 H 1.08003 * 119.54779 * 180.02562 * 11 10 7 41 41 H 1.08000 * 120.02505 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.86224 * 179.97438 * 16 15 14 43 43 H 1.07996 * 119.83222 * 179.97438 * 17 16 15 44 44 H 1.08002 * 119.97587 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8329 1.9059 1.2846 5 6 2.5033 1.2204 2.3441 6 6 3.4820 1.2000 -0.3063 7 6 3.9916 0.0701 -0.9221 8 6 3.0880 -1.0760 -1.2978 9 8 3.8588 -2.1059 -1.9202 10 6 5.3521 0.0183 -1.1904 11 6 6.1551 1.0859 -0.8334 12 7 5.6458 2.1479 -0.2432 13 6 4.3501 2.2369 0.0311 14 6 3.8213 3.4514 0.6958 15 6 2.7411 4.1373 0.1446 16 6 2.2527 5.2678 0.7670 17 6 2.8316 5.7246 1.9391 18 6 3.9027 5.0538 2.4954 19 6 4.4014 3.9122 1.8839 20 8 5.4498 3.2487 2.4318 21 6 5.8788 3.6715 3.6379 22 1 5.3383 4.4456 4.1624 23 6 7.0139 3.1125 4.2050 24 7 7.6720 2.1693 3.5665 25 14 7.6088 3.6989 5.8760 26 1 6.5487 3.4641 6.8891 27 1 8.8321 2.9484 6.2573 28 1 7.9180 5.1498 5.8101 29 1 -0.3633 0.5889 0.8422 30 1 -0.3633 0.4350 -0.9311 31 1 -0.3633 -1.0237 0.0888 32 1 1.5244 1.9195 -0.7583 33 1 2.1895 0.1767 2.3575 34 1 3.5807 1.2738 2.1871 35 1 2.2512 1.6878 3.2960 36 1 2.3244 -0.7242 -1.9916 37 1 2.6102 -1.4711 -0.4014 38 1 3.3408 -2.8770 -2.1888 39 1 5.7797 -0.8479 -1.6733 40 1 7.2143 1.0487 -1.0414 41 1 2.2868 3.7848 -0.7697 42 1 1.4156 5.7986 0.3383 43 1 2.4439 6.6104 2.4200 44 1 4.3500 5.4154 3.4095 45 1 8.4659 1.7780 3.9635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243583223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:02 Heat of formation + Delta-G solvation = -107.940731 kcal Electronic energy + Delta-G solvation = -32199.489081 eV Core-core repulsion = 27955.147273 eV Total energy + Delta-G solvation = -4244.341808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97755 -40.38612 -39.61666 -38.12673 -37.68347 -36.97460 -34.27154 -33.95216 -33.60428 -30.79274 -30.26241 -28.72813 -27.82468 -27.52659 -27.21595 -25.62519 -24.05301 -23.13205 -22.65459 -21.66371 -19.75446 -18.88306 -18.76272 -18.05963 -17.91979 -17.72963 -17.21772 -16.66869 -16.33584 -16.29299 -15.87896 -15.69332 -15.53239 -15.30376 -15.19790 -14.99300 -14.77740 -14.66700 -14.44116 -14.30592 -14.07336 -13.60615 -13.49154 -13.08432 -12.95070 -12.72154 -12.52448 -12.46705 -12.39055 -12.26215 -12.11767 -11.69678 -11.41550 -11.17839 -11.12564 -10.93958 -10.73885 -10.35567 -10.20357 -10.06422 -9.32266 -8.77157 -8.39799 -6.05552 -0.08382 0.24531 0.78474 0.91517 1.33103 1.44327 1.48319 2.18665 2.46116 2.71174 2.87752 2.97764 3.16383 3.28899 3.49110 3.58557 3.74901 3.84334 4.03774 4.17592 4.25269 4.30139 4.34075 4.40150 4.44832 4.52636 4.58737 4.60902 4.65856 4.67889 4.75076 4.81050 4.88182 4.90125 4.98742 5.04260 5.12506 5.19168 5.23975 5.34968 5.64869 5.68035 5.73812 5.82657 5.84910 6.06905 6.28570 6.31288 6.97839 7.03900 7.17610 7.90900 8.81545 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004792 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.406923 B = 5841.767561 C = 7009.905762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.402 6.402 3 C 0.300 3.700 4 O -0.372 6.372 5 C 0.051 3.949 6 C -0.179 4.179 7 C -0.029 4.029 8 C 0.140 3.860 9 O -0.590 6.590 10 C -0.170 4.170 11 C 0.093 3.907 12 N -0.502 5.502 13 C 0.205 3.795 14 C -0.122 4.122 15 C -0.038 4.038 16 C -0.189 4.189 17 C -0.063 4.063 18 C -0.255 4.255 19 C 0.145 3.855 20 O -0.202 6.202 21 C -0.411 4.411 22 H 0.095 0.905 23 C -0.018 4.018 24 N -0.910 5.910 25 Si 1.010 2.990 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.054 0.946 34 H 0.010 0.990 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.403 0.597 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.135 0.865 42 H 0.152 0.848 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 -4.932 -9.556 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.323 6.323 3 C 0.204 3.796 4 O -0.291 6.291 5 C -0.045 4.045 6 C -0.182 4.182 7 C -0.037 4.037 8 C 0.063 3.937 9 O -0.400 6.400 10 C -0.190 4.190 11 C -0.064 4.064 12 N -0.211 5.211 13 C 0.068 3.932 14 C -0.124 4.124 15 C -0.057 4.057 16 C -0.207 4.207 17 C -0.081 4.081 18 C -0.274 4.274 19 C 0.093 3.907 20 O -0.107 6.107 21 C -0.487 4.487 22 H 0.113 0.887 23 C -0.216 4.216 24 N -0.548 5.548 25 Si 0.830 3.170 26 H -0.183 1.183 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.173 0.827 40 H 0.178 0.822 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.160 0.840 44 H 0.132 0.868 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.138 -4.163 -9.248 18.221 hybrid contribution 0.273 -0.797 0.755 1.131 sum -14.865 -4.960 -8.493 17.824 Atomic orbital electron populations 1.22985 0.78830 1.04145 1.01431 1.88089 1.22323 1.27793 1.94117 1.21806 0.87873 0.83346 0.86573 1.88111 1.72367 1.52431 1.16227 1.22376 0.95321 0.96751 0.90098 1.20852 0.97117 0.95387 1.04813 1.20319 0.94887 0.94422 0.94100 1.20996 0.89596 0.85176 0.97912 1.86376 1.40480 1.31710 1.81453 1.22091 0.94052 1.00206 1.02661 1.23094 1.01089 0.89120 0.93066 1.67891 1.13977 1.27637 1.11553 1.19569 0.87969 0.93079 0.92559 1.17696 1.00728 0.97976 0.95980 1.20854 0.92402 0.94145 0.98317 1.20945 1.03509 0.98721 0.97534 1.21171 0.93279 0.98403 0.95224 1.21213 1.03192 0.98922 1.04080 1.19725 0.87710 0.90911 0.92390 1.84036 1.41668 1.52035 1.32952 1.21704 1.11233 1.22902 0.92886 0.88734 1.26427 0.95191 0.96190 1.03823 1.70231 1.18285 1.26146 1.40109 0.84773 0.78062 0.78663 0.75490 1.18271 1.19954 1.18429 0.93766 0.91902 0.87643 0.85241 0.92734 0.97146 0.90418 0.89809 0.89566 0.74636 0.82652 0.82221 0.84681 0.83048 0.83996 0.86751 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.92 113.37 1.24 1.56 16 2 O -0.40 -9.14 5.24 -126.21 -0.66 -9.81 16 3 C 0.30 8.45 2.32 71.23 0.17 8.62 16 4 O -0.37 -12.39 7.54 -126.21 -0.95 -13.34 16 5 C 0.05 1.93 9.73 113.37 1.10 3.03 16 6 C -0.18 -6.38 4.61 -19.55 -0.09 -6.47 16 7 C -0.03 -0.96 5.89 -19.70 -0.12 -1.08 16 8 C 0.14 3.25 5.57 71.24 0.40 3.65 16 9 O -0.59 -12.51 12.24 -148.98 -1.82 -14.34 16 10 C -0.17 -5.99 9.44 22.41 0.21 -5.78 16 11 C 0.09 3.86 11.17 84.72 0.95 4.81 16 12 N -0.50 -24.52 9.83 -184.89 -1.82 -26.33 16 13 C 0.20 9.04 4.90 41.93 0.21 9.24 16 14 C -0.12 -5.34 3.33 -19.94 -0.07 -5.41 16 15 C -0.04 -1.32 7.41 22.47 0.17 -1.16 16 16 C -0.19 -5.83 10.03 22.26 0.22 -5.61 16 17 C -0.06 -2.17 10.03 22.29 0.22 -1.94 16 18 C -0.25 -11.38 9.12 22.36 0.20 -11.18 16 19 C 0.15 7.37 6.08 22.83 0.14 7.51 16 20 O -0.20 -12.26 8.84 -21.29 -0.19 -12.45 16 21 C -0.41 -24.37 9.44 67.92 0.64 -23.72 16 22 H 0.10 5.20 5.31 -2.91 -0.02 5.18 16 23 C -0.02 -1.05 5.49 84.84 0.47 -0.59 16 24 N -0.91 -57.36 13.67 21.61 0.30 -57.07 16 25 Si 1.01 44.36 29.55 68.60 2.03 46.38 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 29 H 0.04 0.75 7.86 -2.39 -0.02 0.74 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 2.97 6.94 -2.39 -0.02 2.95 16 33 H 0.05 1.82 7.58 -2.39 -0.02 1.80 16 34 H 0.01 0.48 5.80 -2.38 -0.01 0.46 16 35 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.08 1.57 7.72 -2.39 -0.02 1.56 16 37 H 0.09 2.03 6.29 -2.39 -0.02 2.01 16 38 H 0.40 4.05 9.12 -74.06 -0.68 3.38 16 39 H 0.16 4.78 7.11 -2.91 -0.02 4.76 16 40 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 41 H 0.14 3.75 6.75 -2.91 -0.02 3.73 16 42 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.11 5.24 5.73 -2.91 -0.02 5.22 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -81.34 366.86 3.31 -78.03 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.37 Total: 33.43 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 6.06 Total: -24.51 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.52 Total: -83.40 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -3.62 Total: -49.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -81.34 3.31 -78.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.913 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds