Wall clock time and date at job start Wed Apr 1 2020 03:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46941 * 2 1 4 4 C 1.53005 * 109.46870 * 240.00107 * 2 1 3 5 5 N 1.46502 * 109.46708 * 184.99933 * 4 2 1 6 6 C 1.34777 * 119.99818 * 180.02562 * 5 4 2 7 7 O 1.21576 * 119.99948 * 0.02562 * 6 5 4 8 8 C 1.47709 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.41494 * 126.52007 * 179.97438 * 8 6 5 10 10 C 1.35367 * 105.50576 * 179.97438 * 9 8 6 11 11 N 1.35031 * 107.22543 * 0.23337 * 10 9 8 12 12 C 1.46500 * 124.88418 * 179.76759 * 11 10 9 13 13 F 1.39898 * 109.47087 * 299.99793 * 12 11 10 14 14 F 1.39907 * 109.47191 * 59.99425 * 12 11 10 15 15 N 1.28472 * 110.23159 * 359.60437 * 11 10 9 16 16 N 1.46891 * 109.47243 * 119.99961 * 2 1 3 17 17 C 1.46899 * 111.00296 * 275.00254 * 16 2 1 18 18 C 1.50704 * 109.47460 * 179.97438 * 17 16 2 19 19 O 1.21290 * 119.99259 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00039 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00213 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99454 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00526 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99920 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00308 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47398 * 89.99551 * 25 23 21 27 27 H 1.48494 * 109.47178 * 210.00152 * 25 23 21 28 28 H 1.48503 * 109.46781 * 329.99530 * 25 23 21 29 29 H 1.08997 * 109.46851 * 299.99964 * 1 2 3 30 30 H 1.09001 * 109.47165 * 59.99995 * 1 2 3 31 31 H 1.08995 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46793 * 65.00503 * 4 2 1 33 33 H 1.08996 * 109.47017 * 305.00134 * 4 2 1 34 34 H 0.97003 * 120.00221 * 359.97438 * 5 4 2 35 35 H 1.08008 * 127.24760 * 359.94878 * 9 8 6 36 36 H 1.08002 * 126.38433 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47157 * 179.97438 * 12 11 10 38 38 H 1.00902 * 111.00333 * 151.04275 * 16 2 1 39 39 H 1.09001 * 109.47180 * 299.99922 * 17 16 2 40 40 H 1.09004 * 109.47084 * 59.99855 * 17 16 2 41 41 H 0.97001 * 120.00233 * 0.02562 * 20 18 17 42 42 H 0.96991 * 119.99995 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1731 -1.4282 -2.1912 7 8 3.5686 -1.8835 -3.1428 8 6 5.6452 -1.5347 -2.1319 9 6 6.4857 -2.1349 -3.0990 10 6 7.7445 -1.9952 -2.6211 11 7 7.6536 -1.3539 -1.4363 12 6 8.7918 -1.0074 -0.5817 13 9 9.4687 -2.1742 -0.2107 14 9 9.6625 -0.1662 -1.2829 15 7 6.4256 -1.0883 -1.1680 16 7 2.0197 -0.6924 1.1994 17 6 2.0825 0.2226 2.3469 18 6 2.5874 -0.5218 3.5560 19 8 2.8678 -1.6987 3.4701 20 7 2.7283 0.1204 4.7324 21 6 3.1881 -0.5566 5.8323 22 1 3.4378 -1.6046 5.7559 23 6 3.3329 0.1053 7.0454 24 7 3.0295 1.3806 7.1383 25 14 3.9601 -0.8170 8.5438 26 1 5.4410 -0.7228 8.5991 27 1 3.3797 -0.2182 9.7724 28 1 3.5579 -2.2436 8.4510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 3.9825 -0.4621 -0.4320 35 1 6.1860 -2.6058 -4.0237 36 1 8.6519 -2.3371 -3.0967 37 1 8.4331 -0.4955 0.3113 38 1 2.9174 -1.1205 1.0287 39 1 2.7589 1.0462 2.1182 40 1 1.0871 0.6163 2.5525 41 1 2.5044 1.0617 4.8010 42 1 3.1302 1.8426 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266943958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:39 Heat of formation + Delta-G solvation = -103.599830 kcal Electronic energy + Delta-G solvation = -29528.791615 eV Core-core repulsion = 24794.994014 eV Total energy + Delta-G solvation = -4733.797600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.51473 -48.59917 -43.82236 -40.78194 -40.11507 -38.20036 -35.97754 -35.08237 -34.05946 -33.26793 -32.26008 -31.79225 -28.46336 -28.08265 -26.88754 -25.69484 -24.11757 -22.78479 -21.67346 -21.31817 -21.07370 -19.92825 -19.82649 -19.09395 -18.90037 -18.36025 -17.75715 -17.17863 -16.99360 -16.84429 -16.57606 -16.30224 -15.81102 -15.73490 -15.46134 -15.31452 -15.26814 -14.96608 -14.91662 -14.67869 -14.37769 -14.20169 -13.71949 -13.59495 -13.47685 -13.26929 -13.22629 -12.92987 -12.80181 -12.56652 -12.40224 -12.29329 -12.12312 -11.87683 -11.49810 -11.44241 -10.84195 -10.42437 -10.33450 -10.22744 -10.00330 -9.37014 -8.45985 -5.94358 0.17495 0.60428 0.91309 1.38078 1.42464 1.54780 1.95791 2.06582 2.18792 2.29414 2.40015 2.87119 2.96765 3.21620 3.40744 3.43450 3.49614 3.64309 3.69476 3.95004 4.18498 4.26770 4.39804 4.45725 4.46911 4.55366 4.60816 4.63686 4.81240 4.96193 5.03426 5.07291 5.20894 5.35333 5.41892 5.46944 5.88838 6.09727 6.17597 6.33385 6.52180 6.61278 6.96130 7.13892 7.57584 8.13193 8.71299 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.007847 B = 0.002942 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3567.172919 B = 9513.516892 C =12476.965682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.711 5.711 6 C 0.606 3.394 7 O -0.557 6.557 8 C -0.014 4.014 9 C -0.181 4.181 10 C 0.009 3.991 11 N -0.348 5.348 12 C 0.497 3.503 13 F -0.177 7.177 14 F -0.174 7.174 15 N -0.258 5.258 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.408 0.592 35 H 0.181 0.819 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.341 0.659 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.397 0.603 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 1.866 -19.602 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.362 5.362 6 C 0.390 3.610 7 O -0.434 6.434 8 C -0.177 4.177 9 C -0.208 4.208 10 C -0.131 4.131 11 N -0.145 5.145 12 C 0.364 3.636 13 F -0.158 7.158 14 F -0.155 7.155 15 N -0.092 5.092 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.244 0.756 35 H 0.199 0.801 36 H 0.239 0.761 37 H 0.215 0.785 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.872 1.246 -18.889 20.502 hybrid contribution 1.357 0.163 0.310 1.402 sum 9.230 1.409 -18.580 20.793 Atomic orbital electron populations 1.21746 0.92264 1.02658 1.02767 1.21891 0.97783 0.96426 0.87145 0.91323 1.21713 0.78054 1.01939 0.98518 1.45907 1.08659 1.58513 1.23159 1.16937 0.84298 0.77502 0.82243 1.90785 1.68852 1.49376 1.34374 1.22150 0.94255 1.05846 0.95447 1.22135 0.90665 1.05548 1.02492 1.23570 1.01898 0.99806 0.87780 1.46833 1.05837 1.43952 1.17899 1.21605 0.74806 0.77766 0.89385 1.93159 1.80523 1.51365 1.90775 1.93158 1.70231 1.70357 1.81764 1.73463 0.89737 1.20956 1.25038 1.60142 1.34680 1.32895 1.03824 1.21624 1.02638 0.93643 0.88919 1.20882 0.83200 0.87965 0.85462 1.90505 1.56626 1.18275 1.85603 1.41910 1.58261 1.12564 1.08164 1.19640 1.42080 0.95904 0.88626 0.90467 1.25989 0.97255 0.96593 1.01241 1.69665 1.48588 1.09627 1.28137 0.84968 0.78560 0.77999 0.77074 1.19505 1.19623 1.19976 0.92226 0.89787 0.92633 0.88774 0.91258 0.75556 0.80137 0.76101 0.78477 0.83864 0.91073 0.87548 0.76927 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.42 71.98 0.68 -1.91 16 2 C 0.08 1.63 2.81 44.92 0.13 1.76 16 3 H 0.07 1.25 7.80 -2.38 -0.02 1.23 16 4 C 0.12 2.60 5.31 86.38 0.46 3.06 16 5 N -0.71 -16.77 4.99 -466.09 -2.32 -19.10 16 6 C 0.61 16.27 7.82 86.75 0.68 16.95 16 7 O -0.56 -17.62 16.93 -3.95 -0.07 -17.68 16 8 C -0.01 -0.34 7.13 42.45 0.30 -0.04 16 9 C -0.18 -3.51 10.81 22.41 0.24 -3.26 16 10 C 0.01 0.14 11.33 83.54 0.95 1.09 16 11 N -0.35 -6.21 3.56 -364.69 -1.30 -7.51 16 12 C 0.50 6.29 6.24 127.77 0.80 7.08 16 13 F -0.18 -2.63 17.46 44.97 0.79 -1.85 16 14 F -0.17 -2.26 17.46 44.97 0.79 -1.47 16 15 N -0.26 -5.84 11.67 -48.18 -0.56 -6.40 16 16 N -0.68 -20.34 5.92 -495.56 -2.94 -23.28 16 17 C 0.06 2.06 5.97 85.56 0.51 2.57 16 18 C 0.44 20.23 7.82 87.66 0.69 20.91 16 19 O -0.62 -34.14 15.78 -3.06 -0.05 -34.19 16 20 N -0.57 -28.57 5.29 -306.99 -1.62 -30.20 16 21 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 24 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 25 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.41 9.35 7.10 -92.71 -0.66 8.70 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.20 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.34 11.00 6.41 -89.69 -0.58 10.42 16 39 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 40 H 0.11 3.08 7.44 -2.39 -0.02 3.07 16 41 H 0.40 18.73 7.90 -92.71 -0.73 17.99 16 42 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -74.32 377.25 0.87 -73.45 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -0.85 Total: 41.95 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 6.71 Total: 30.29 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -8.46 Total: -134.85 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.12 Total: -51.87 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.57 Total: -3.32 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.32 0.87 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266943958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.154 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds