Wall clock time and date at job start Wed Apr 1 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99568 * 2 1 4 4 C 1.53006 * 109.47115 * 269.99638 * 3 2 1 5 5 N 1.46901 * 109.46880 * 180.02562 * 4 3 2 6 6 C 1.46910 * 110.99767 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00273 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00059 * 180.02562 * 7 6 5 10 10 C 1.37093 * 120.00099 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.38958 * 119.99948 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99880 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99934 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47354 * 60.00327 * 14 12 10 16 16 H 1.48505 * 109.47098 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47267 * 300.00140 * 14 12 10 18 18 C 1.34770 * 120.00094 * 179.97438 * 2 1 3 19 19 O 1.21576 * 120.00130 * 183.51699 * 18 2 1 20 20 C 1.47712 * 119.99984 * 3.52481 * 18 2 1 21 21 C 1.41505 * 126.51381 * 173.45259 * 20 18 2 22 22 C 1.35367 * 105.49959 * 179.97438 * 21 20 18 23 23 N 1.35039 * 107.23065 * 0.26394 * 22 21 20 24 24 C 1.46498 * 124.88415 * 179.71118 * 23 22 21 25 25 F 1.39903 * 109.46745 * 210.00214 * 24 23 22 26 26 F 1.39900 * 109.47179 * 330.00022 * 24 23 22 27 27 N 1.28473 * 110.22569 * 359.54617 * 23 22 21 28 28 H 1.08998 * 109.47021 * 264.08601 * 1 2 3 29 29 H 1.08998 * 109.46902 * 24.09400 * 1 2 3 30 30 H 1.09000 * 109.46466 * 144.08685 * 1 2 3 31 31 H 1.09004 * 109.47812 * 29.99448 * 3 2 1 32 32 H 1.09005 * 109.47013 * 149.99995 * 3 2 1 33 33 H 1.08995 * 109.46787 * 300.00264 * 4 3 2 34 34 H 1.08996 * 109.47140 * 60.00286 * 4 3 2 35 35 H 1.00896 * 111.00347 * 56.04542 * 5 4 3 36 36 H 1.08999 * 109.47084 * 300.00270 * 6 5 4 37 37 H 1.09004 * 109.46508 * 59.99869 * 6 5 4 38 38 H 0.97004 * 119.99780 * 359.97438 * 9 7 6 39 39 H 0.96996 * 120.00144 * 179.97438 * 13 12 10 40 40 H 1.07993 * 127.25443 * 359.96021 * 21 20 18 41 41 H 1.07996 * 126.38805 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.46899 * 90.00489 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1874 2.9823 -1.4425 6 6 3.4513 3.4380 -2.8140 7 6 4.2044 4.7426 -2.7738 8 8 4.4926 5.2439 -1.7076 9 7 4.5568 5.3530 -3.9226 10 6 5.2414 6.5401 -3.8860 11 1 5.4988 6.9861 -2.9367 12 6 5.6053 7.1691 -5.0705 13 7 5.2926 6.6263 -6.2256 14 14 6.5388 8.7863 -5.0206 15 1 7.8266 8.5927 -4.3071 16 1 6.8049 9.2472 -6.4070 17 1 5.7264 9.8050 -4.3082 18 6 2.1389 -1.1671 0.0005 19 8 3.3530 -1.1681 0.0651 20 6 1.4025 -2.4452 -0.0776 21 6 1.9672 -3.7352 -0.2165 22 6 0.9170 -4.5889 -0.2424 23 7 -0.2052 -3.8461 -0.1314 24 6 -1.5682 -4.3832 -0.1232 25 9 -2.4449 -3.4383 -0.6671 26 9 -1.6124 -5.5544 -0.8871 27 7 0.0945 -2.6009 -0.0305 28 1 -0.3633 -0.1059 1.0222 29 1 -0.3633 0.9381 -0.4195 30 1 -0.3632 -0.8323 -0.6028 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.0416 0.9508 -1.9563 34 1 1.5001 1.8407 -1.9564 35 1 4.0449 2.9045 -0.9165 36 1 4.0471 2.6900 -3.3370 37 1 2.5059 3.5805 -3.3376 38 1 4.3260 4.9522 -4.7753 39 1 5.5462 7.0655 -7.0524 40 1 3.0152 -3.9859 -0.2873 41 1 0.9670 -5.6635 -0.3383 42 1 -1.8646 -4.6064 0.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267378480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:45 Heat of formation + Delta-G solvation = -57.613588 kcal Electronic energy + Delta-G solvation = -28888.566932 eV Core-core repulsion = 24156.763445 eV Total energy + Delta-G solvation = -4731.803487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.11934 -48.22071 -43.21211 -39.84249 -38.23138 -36.38352 -34.98350 -33.80642 -33.44389 -31.48991 -31.18431 -29.81429 -27.45491 -26.95801 -25.85637 -24.23255 -23.09148 -22.22577 -21.82667 -19.82775 -19.25499 -19.08694 -18.95769 -18.05331 -17.84461 -17.32117 -16.47148 -16.32564 -16.03494 -15.50819 -15.19596 -15.01625 -14.97711 -14.57732 -14.49988 -14.35794 -14.09490 -13.98999 -13.66633 -13.62837 -13.38278 -13.12310 -12.99355 -12.95260 -12.73455 -12.18106 -12.01822 -11.48784 -11.45758 -11.15919 -11.06418 -10.92061 -10.41028 -10.37456 -10.17422 -10.00757 -9.79776 -9.45952 -8.90794 -8.40918 -8.03329 -7.91779 -6.37564 -3.78300 0.88278 1.14937 1.56731 2.64738 2.73651 3.04208 3.18532 3.23559 3.28723 3.33511 3.63924 3.95587 4.01958 4.09042 4.17804 4.45461 4.55572 4.95759 5.04464 5.08874 5.14390 5.17136 5.24444 5.30794 5.38700 5.52076 5.55784 5.76812 5.84579 5.89637 5.92327 5.96708 6.04192 6.27105 6.35476 7.02334 7.18914 7.22415 7.59019 7.68941 7.89030 8.10350 8.65730 9.21863 9.58668 10.10340 10.80199 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.001587 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.376572 B =17642.345932 C =17871.089231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.045 3.955 5 N -0.666 5.666 6 C 0.052 3.948 7 C 0.442 3.558 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.598 3.402 19 O -0.524 6.524 20 C 0.011 3.989 21 C -0.166 4.166 22 C -0.001 4.001 23 N -0.356 5.356 24 C 0.504 3.496 25 F -0.166 7.166 26 F -0.174 7.174 27 N -0.243 5.243 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.351 0.649 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.172 0.828 41 H 0.191 0.809 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 -28.149 11.912 34.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.332 5.332 3 C -0.006 4.006 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.383 3.617 19 O -0.398 6.398 20 C -0.152 4.152 21 C -0.194 4.194 22 C -0.140 4.140 23 N -0.153 5.153 24 C 0.372 3.628 25 F -0.147 7.147 26 F -0.155 7.155 27 N -0.077 5.077 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.189 0.811 41 H 0.208 0.792 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.643 -26.828 12.601 34.494 hybrid contribution 1.446 -0.636 -1.286 2.037 sum -16.198 -27.464 11.315 33.833 Atomic orbital electron populations 1.22163 0.78246 1.03895 1.02631 1.47671 1.07838 1.05583 1.72089 1.21506 0.98400 0.83357 0.97317 1.22267 0.99149 0.90627 0.96490 1.60024 1.28374 1.27802 1.13715 1.21658 1.00237 0.96104 0.90058 1.19794 0.85146 0.87314 0.85038 1.90520 1.59288 1.67236 1.29640 1.41853 1.50087 1.21359 1.06770 1.19665 1.30975 0.97733 0.94521 0.87946 1.25268 0.98208 0.99884 0.94643 1.69606 1.47152 1.40156 0.97478 0.85904 0.79822 0.81382 0.77019 1.19920 1.21015 1.19900 1.16941 0.86150 0.81621 0.76970 1.90838 1.12604 1.86438 1.49957 1.22212 0.89276 0.95806 1.07865 1.21924 1.00732 0.90157 1.06554 1.22900 0.84537 0.99880 1.06721 1.46927 1.07396 1.05656 1.55332 1.21502 0.74130 0.73163 0.94032 1.93168 1.67705 1.65554 1.88302 1.93158 1.95342 1.47665 1.79361 1.73830 1.16630 0.98113 1.19119 0.92383 0.90754 0.88978 0.88917 0.89381 0.95097 0.91014 0.82938 0.93785 0.89618 0.77452 0.91853 0.81092 0.79242 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.63 59.85 0.58 1.22 16 2 N -0.60 -6.82 2.87 -182.74 -0.53 -7.35 16 3 C 0.12 1.43 5.67 -4.04 -0.02 1.40 16 4 C 0.05 0.63 6.01 -3.82 -0.02 0.60 16 5 N -0.67 -11.40 6.13 -115.05 -0.70 -12.11 16 6 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 7 C 0.44 10.80 7.82 -10.99 -0.09 10.71 16 8 O -0.58 -16.25 15.78 5.54 0.09 -16.16 16 9 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 10 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 13 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 14 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.60 7.70 7.68 -12.39 -0.10 7.61 16 19 O -0.52 -8.35 16.49 5.30 0.09 -8.27 16 20 C 0.01 0.12 6.82 -82.77 -0.56 -0.44 16 21 C -0.17 -1.38 10.81 -39.36 -0.43 -1.81 16 22 C 0.00 0.00 10.98 -17.16 -0.19 -0.19 16 23 N -0.36 -2.27 3.68 -66.62 -0.24 -2.51 16 24 C 0.50 1.64 6.56 59.85 0.39 2.04 16 25 F -0.17 -0.95 17.26 2.25 0.04 -0.91 16 26 F -0.17 -0.66 16.96 2.25 0.04 -0.62 16 27 N -0.24 -2.17 8.25 33.42 0.28 -1.90 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 30 H 0.09 0.84 5.36 -51.93 -0.28 0.56 16 31 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.09 1.18 7.37 -51.93 -0.38 0.80 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.35 6.25 8.43 -39.29 -0.33 5.92 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.19 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.16 -0.19 8.14 -51.93 -0.42 -0.61 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -36.11 375.53 -5.40 -41.50 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.04 Total: 11.43 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.71 Total: 13.88 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.53 Total: -62.93 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.17 Total: -24.43 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.08 Total: -1.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.11 -5.40 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267378480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.111 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds