Wall clock time and date at job start Wed Apr 1 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99729 * 2 1 4 4 C 1.37993 * 120.00225 * 179.97438 * 2 1 3 5 5 N 1.32872 * 120.04233 * 180.02562 * 4 2 1 6 6 C 1.32842 * 119.82306 * 179.97438 * 5 4 2 7 7 N 1.37994 * 120.04245 * 180.02562 * 6 5 4 8 8 N 1.33119 * 119.91086 * 359.75011 * 6 5 4 9 9 C 1.32133 * 120.08777 * 0.49869 * 8 6 5 10 10 C 1.50706 * 119.90894 * 179.77044 * 9 8 6 11 11 N 1.46492 * 109.47401 * 269.72552 * 10 9 8 12 12 C 1.36942 * 119.99955 * 68.47923 * 11 10 9 13 13 H 1.07997 * 120.00251 * 210.39709 * 12 11 10 14 14 C 1.38810 * 119.99519 * 30.67260 * 12 11 10 15 15 N 1.31619 * 120.00260 * 23.48029 * 14 12 11 16 16 Si 1.86806 * 119.99809 * 203.47210 * 14 12 11 17 17 H 1.48506 * 109.46724 * 90.00152 * 16 14 12 18 18 H 1.48493 * 109.47147 * 210.00077 * 16 14 12 19 19 H 1.48498 * 109.47069 * 330.00425 * 16 14 12 20 20 S 1.65598 * 120.00432 * 248.48346 * 11 10 9 21 21 O 1.42099 * 106.40086 * 23.53846 * 20 11 10 22 22 O 1.42095 * 106.40586 * 156.45957 * 20 11 10 23 23 N 1.65606 * 107.21692 * 269.99854 * 20 11 10 24 24 C 1.46505 * 119.99738 * 89.99447 * 23 20 11 25 25 C 1.46494 * 120.00230 * 269.99782 * 23 20 11 26 26 N 1.32155 * 120.17796 * 359.49944 * 9 8 6 27 27 H 1.09005 * 109.47055 * 269.99919 * 1 2 3 28 28 H 1.08994 * 109.47398 * 30.00659 * 1 2 3 29 29 H 1.09001 * 109.47051 * 150.00910 * 1 2 3 30 30 H 1.09000 * 109.47293 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46858 * 299.99383 * 3 2 1 32 32 H 1.08998 * 109.47923 * 59.99619 * 3 2 1 33 33 H 0.97001 * 120.00389 * 0.02562 * 7 6 5 34 34 H 0.96999 * 120.00394 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.46853 * 149.72935 * 10 9 8 36 36 H 1.08996 * 109.47307 * 29.73335 * 10 9 8 37 37 H 0.97003 * 120.00000 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.46865 * 89.99847 * 24 23 20 39 39 H 1.09000 * 109.47244 * 209.99757 * 24 23 20 40 40 H 1.08994 * 109.47425 * 330.00518 * 24 23 20 41 41 H 1.08997 * 109.47117 * 60.00023 * 25 23 20 42 42 H 1.09003 * 109.47175 * 179.97438 * 25 23 20 43 43 H 1.09002 * 109.46933 * 299.99880 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1550 -1.1950 0.0005 5 7 3.4837 -1.1960 0.0010 6 6 4.1435 -2.3489 0.0021 7 7 5.5235 -2.3552 0.0032 8 7 3.4718 -3.4982 0.0076 9 6 2.1505 -3.4932 0.0021 10 6 1.3941 -4.7967 0.0032 11 7 1.1490 -5.2202 -1.3775 12 6 2.1945 -5.6173 -2.1678 13 1 2.1535 -5.4621 -3.2358 14 6 3.3045 -6.2243 -1.5967 15 7 3.1969 -6.8328 -0.4346 16 14 4.9511 -6.1779 -2.4777 17 1 5.7043 -4.9696 -2.0557 18 1 5.7315 -7.3933 -2.1328 19 1 4.7264 -6.1338 -3.9449 20 16 -0.3924 -5.2188 -1.9829 21 8 -1.1291 -4.2875 -1.2024 22 8 -0.2688 -5.1232 -3.3952 23 7 -1.0432 -6.7092 -1.6703 24 6 -1.7677 -6.9442 -0.4188 25 6 -0.8943 -7.7926 -2.6451 26 7 1.4905 -2.3482 0.0011 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5137 30 1 3.2691 1.0697 -0.0005 31 1 1.9341 1.8403 -0.8901 32 1 1.9341 1.8405 0.8899 33 1 6.0123 -1.5173 0.0035 34 1 6.0047 -3.1973 0.0035 35 1 0.4419 -4.6637 0.5169 36 1 1.9814 -5.5571 0.5178 37 1 3.9727 -7.2567 -0.0354 38 1 -2.8238 -6.7149 -0.5618 39 1 -1.6590 -7.9887 -0.1267 40 1 -1.3596 -6.3038 0.3631 41 1 0.1647 -7.9957 -2.8036 42 1 -1.3837 -8.6906 -2.2678 43 1 -1.3530 -7.4977 -3.5889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329944929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:15 Heat of formation + Delta-G solvation = 35.534074 kcal Electronic energy + Delta-G solvation = -30408.046662 eV Core-core repulsion = 26266.415498 eV Total energy + Delta-G solvation = -4141.631164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.79671 -36.99236 -36.11775 -35.92330 -35.11451 -34.56273 -34.49594 -32.38159 -31.33591 -30.94710 -28.07843 -27.38908 -27.01387 -25.65026 -24.21675 -23.63864 -22.14281 -21.16679 -18.61461 -18.26279 -17.62735 -17.18139 -16.49797 -16.26791 -15.66730 -15.50273 -15.38158 -15.04386 -14.69118 -14.20900 -14.12597 -13.76690 -13.69607 -13.33259 -13.21535 -13.03467 -12.37414 -12.35819 -12.01936 -12.00007 -11.85562 -11.78821 -11.49681 -11.42559 -11.32946 -11.04093 -10.96087 -10.77997 -10.68833 -10.51093 -10.34700 -10.20742 -10.13248 -9.26039 -8.79433 -8.69381 -8.49081 -8.17533 -7.84037 -7.80043 -6.32509 -3.95804 1.65912 2.07323 2.08030 2.89129 3.23406 3.27733 3.33209 3.64132 4.01467 4.33938 4.52407 4.68296 4.92391 4.94753 5.02935 5.34871 5.45685 5.48305 5.54398 5.57485 5.63297 5.83549 5.91511 5.94865 6.02235 6.15210 6.19919 6.24519 6.30683 6.46708 6.62844 6.75960 6.83599 7.00249 7.06034 7.19619 7.33029 7.44770 7.60990 7.70941 7.90425 8.13201 8.43055 8.92635 9.29538 9.33464 10.65205 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.006093 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.265109 B = 4594.710745 C = 6569.879418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.589 5.589 3 C 0.099 3.901 4 C 0.615 3.385 5 N -0.666 5.666 6 C 0.616 3.384 7 N -0.815 5.815 8 N -0.593 5.593 9 C 0.445 3.555 10 C 0.183 3.817 11 N -0.818 5.818 12 C -0.288 4.288 13 H 0.101 0.899 14 C 0.068 3.932 15 N -0.831 5.831 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 S 2.689 3.311 21 O -1.005 7.005 22 O -0.998 6.998 23 N -1.022 6.022 24 C 0.106 3.894 25 C 0.103 3.897 26 N -0.621 5.621 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.270 0.730 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 5.736 4.178 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.308 5.308 3 C -0.044 4.044 4 C 0.251 3.749 5 N -0.407 5.407 6 C 0.249 3.751 7 N -0.365 5.365 8 N -0.326 5.326 9 C 0.166 3.834 10 C 0.053 3.947 11 N -0.647 5.647 12 C -0.429 4.429 13 H 0.118 0.882 14 C -0.144 4.144 15 N -0.469 5.469 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.199 1.199 20 S 2.711 3.289 21 O -0.989 6.989 22 O -0.982 6.982 23 N -0.857 5.857 24 C -0.041 4.041 25 C -0.043 4.043 26 N -0.355 5.355 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.238 0.762 34 H 0.246 0.754 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.580 6.483 3.853 7.564 hybrid contribution 1.449 -0.197 -0.231 1.480 sum 0.869 6.286 3.622 7.307 Atomic orbital electron populations 1.21637 0.77317 1.03500 1.01659 1.45707 1.05883 1.01767 1.77456 1.21620 0.98880 0.83565 1.00332 1.18978 0.84330 0.86700 0.84875 1.67684 1.08539 1.30277 1.34195 1.19171 0.87260 0.84507 0.84173 1.41576 1.01126 1.12045 1.81793 1.68602 1.10254 1.27243 1.26495 1.23731 0.85733 0.93362 0.80572 1.20211 0.98799 0.89460 0.86203 1.53426 1.20118 1.72030 1.19099 1.19384 0.94350 1.36708 0.92486 0.88192 1.25237 1.00034 0.92973 0.96205 1.69762 1.30796 1.29018 1.17328 0.86093 0.82286 0.77587 0.79536 1.19950 1.21215 1.19875 1.07144 0.73744 0.74083 0.73911 1.93445 1.72132 1.61764 1.71523 1.93411 1.86800 1.86578 1.31455 1.58719 1.70294 1.30496 1.26188 1.21221 0.95399 1.01337 0.86131 1.21283 1.01832 0.89874 0.91341 1.68619 1.40893 0.97653 1.28351 0.93174 0.91784 0.89161 0.89078 0.92880 0.92945 0.76177 0.75370 0.90083 0.84690 0.91974 0.94334 0.92338 0.91853 0.91965 0.92284 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 10.50 59.84 0.63 2.10 16 2 N -0.59 -9.63 3.36 -191.75 -0.64 -10.28 16 3 C 0.10 1.22 10.71 59.85 0.64 1.86 16 4 C 0.62 12.41 8.19 -322.14 -2.64 9.77 16 5 N -0.67 -12.83 9.02 -14.75 -0.13 -12.96 16 6 C 0.62 12.09 8.76 -322.14 -2.82 9.27 16 7 N -0.82 -12.08 9.05 29.85 0.27 -11.81 16 8 N -0.59 -13.15 10.04 -11.52 -0.12 -13.26 16 9 C 0.45 10.30 6.91 -156.59 -1.08 9.22 16 10 C 0.18 4.22 5.60 -5.20 -0.03 4.19 16 11 N -0.82 -20.00 3.01 -61.09 -0.18 -20.18 16 12 C -0.29 -7.38 8.87 -15.06 -0.13 -7.52 16 13 H 0.10 2.70 7.35 -52.49 -0.39 2.32 16 14 C 0.07 1.65 4.63 -17.43 -0.08 1.57 16 15 N -0.83 -19.97 11.10 55.49 0.62 -19.36 16 16 Si 0.92 19.82 29.62 -169.99 -5.03 14.79 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 S 2.69 64.57 6.00 -107.50 -0.65 63.92 16 21 O -1.00 -24.88 15.88 -57.17 -0.91 -25.78 16 22 O -1.00 -26.64 16.15 -57.17 -0.92 -27.56 16 23 N -1.02 -20.66 3.64 -129.20 -0.47 -21.13 16 24 C 0.11 1.78 10.26 59.85 0.61 2.39 16 25 C 0.10 1.86 10.30 59.84 0.62 2.48 16 26 N -0.62 -13.92 9.18 -11.52 -0.11 -14.02 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.09 1.59 7.37 -51.93 -0.38 1.20 16 30 H 0.09 1.19 6.80 -51.93 -0.35 0.84 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 4.76 8.95 -40.82 -0.37 4.40 16 34 H 0.41 5.83 8.95 -40.82 -0.37 5.47 16 35 H 0.08 1.77 7.09 -51.93 -0.37 1.41 16 36 H 0.14 3.21 5.48 -51.93 -0.28 2.93 16 37 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 40 H 0.06 1.07 7.79 -51.93 -0.40 0.67 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 43 H 0.05 0.85 8.01 -51.93 -0.42 0.44 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -32.48 372.68 -12.76 -45.24 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.81 Total: 11.45 kcal Atomic # 6 Polarization: 39.62 SS G_CDS: -4.29 Total: 35.33 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -0.77 Total: -123.01 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -1.83 Total: -53.34 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Atomic # 16 Polarization: 64.57 SS G_CDS: -0.65 Total: 63.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.48 -12.76 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329944929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.769 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds