Wall clock time and date at job start Wed Apr 1 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99729 * 2 1 4 4 C 1.37993 * 120.00225 * 179.97438 * 2 1 3 5 5 N 1.32872 * 120.04233 * 180.02562 * 4 2 1 6 6 C 1.32842 * 119.82306 * 179.97438 * 5 4 2 7 7 N 1.37994 * 120.04245 * 180.02562 * 6 5 4 8 8 N 1.33119 * 119.91086 * 359.75011 * 6 5 4 9 9 C 1.32133 * 120.08777 * 0.49869 * 8 6 5 10 10 C 1.50706 * 119.90894 * 179.77044 * 9 8 6 11 11 N 1.46492 * 109.47401 * 269.72552 * 10 9 8 12 12 C 1.36942 * 119.99955 * 68.47923 * 11 10 9 13 13 H 1.07997 * 120.00251 * 210.39709 * 12 11 10 14 14 C 1.38810 * 119.99519 * 30.67260 * 12 11 10 15 15 N 1.31619 * 120.00260 * 23.48029 * 14 12 11 16 16 Si 1.86806 * 119.99809 * 203.47210 * 14 12 11 17 17 H 1.48506 * 109.46724 * 90.00152 * 16 14 12 18 18 H 1.48493 * 109.47147 * 210.00077 * 16 14 12 19 19 H 1.48498 * 109.47069 * 330.00425 * 16 14 12 20 20 S 1.65598 * 120.00432 * 248.48346 * 11 10 9 21 21 O 1.42099 * 106.40086 * 23.53846 * 20 11 10 22 22 O 1.42095 * 106.40586 * 156.45957 * 20 11 10 23 23 N 1.65606 * 107.21692 * 269.99854 * 20 11 10 24 24 C 1.46505 * 119.99738 * 89.99447 * 23 20 11 25 25 C 1.46494 * 120.00230 * 269.99782 * 23 20 11 26 26 N 1.32155 * 120.17796 * 359.49944 * 9 8 6 27 27 H 1.09005 * 109.47055 * 269.99919 * 1 2 3 28 28 H 1.08994 * 109.47398 * 30.00659 * 1 2 3 29 29 H 1.09001 * 109.47051 * 150.00910 * 1 2 3 30 30 H 1.09000 * 109.47293 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46858 * 299.99383 * 3 2 1 32 32 H 1.08998 * 109.47923 * 59.99619 * 3 2 1 33 33 H 0.97001 * 120.00389 * 0.02562 * 7 6 5 34 34 H 0.96999 * 120.00394 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.46853 * 149.72935 * 10 9 8 36 36 H 1.08996 * 109.47307 * 29.73335 * 10 9 8 37 37 H 0.97003 * 120.00000 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.46865 * 89.99847 * 24 23 20 39 39 H 1.09000 * 109.47244 * 209.99757 * 24 23 20 40 40 H 1.08994 * 109.47425 * 330.00518 * 24 23 20 41 41 H 1.08997 * 109.47117 * 60.00023 * 25 23 20 42 42 H 1.09003 * 109.47175 * 179.97438 * 25 23 20 43 43 H 1.09002 * 109.46933 * 299.99880 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1550 -1.1950 0.0005 5 7 3.4837 -1.1960 0.0010 6 6 4.1435 -2.3489 0.0021 7 7 5.5235 -2.3552 0.0032 8 7 3.4718 -3.4982 0.0076 9 6 2.1505 -3.4932 0.0021 10 6 1.3941 -4.7967 0.0032 11 7 1.1490 -5.2202 -1.3775 12 6 2.1945 -5.6173 -2.1678 13 1 2.1535 -5.4621 -3.2358 14 6 3.3045 -6.2243 -1.5967 15 7 3.1969 -6.8328 -0.4346 16 14 4.9511 -6.1779 -2.4777 17 1 5.7043 -4.9696 -2.0557 18 1 5.7315 -7.3933 -2.1328 19 1 4.7264 -6.1338 -3.9449 20 16 -0.3924 -5.2188 -1.9829 21 8 -1.1291 -4.2875 -1.2024 22 8 -0.2688 -5.1232 -3.3952 23 7 -1.0432 -6.7092 -1.6703 24 6 -1.7677 -6.9442 -0.4188 25 6 -0.8943 -7.7926 -2.6451 26 7 1.4905 -2.3482 0.0011 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5137 30 1 3.2691 1.0697 -0.0005 31 1 1.9341 1.8403 -0.8901 32 1 1.9341 1.8405 0.8899 33 1 6.0123 -1.5173 0.0035 34 1 6.0047 -3.1973 0.0035 35 1 0.4419 -4.6637 0.5169 36 1 1.9814 -5.5571 0.5178 37 1 3.9727 -7.2567 -0.0354 38 1 -2.8238 -6.7149 -0.5618 39 1 -1.6590 -7.9887 -0.1267 40 1 -1.3596 -6.3038 0.3631 41 1 0.1647 -7.9957 -2.8036 42 1 -1.3837 -8.6906 -2.2678 43 1 -1.3530 -7.4977 -3.5889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329944929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:14 Heat of formation + Delta-G solvation = 14.385667 kcal Electronic energy + Delta-G solvation = -30408.963725 eV Core-core repulsion = 26266.415498 eV Total energy + Delta-G solvation = -4142.548228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.137 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.31084 -38.36280 -37.97092 -37.72942 -36.69537 -36.49182 -36.06246 -33.88947 -33.12567 -32.42519 -29.40406 -28.80716 -28.54013 -26.97873 -26.00481 -25.19914 -23.65046 -22.63676 -20.33616 -19.88244 -19.26537 -18.80429 -18.23869 -18.08583 -17.06762 -16.94992 -16.79478 -16.67428 -16.39924 -15.55703 -15.46796 -15.34091 -15.20215 -14.95366 -14.84400 -14.78267 -13.95341 -13.70291 -13.38333 -13.36073 -13.25193 -13.14973 -13.05144 -12.97677 -12.91806 -12.83328 -12.74395 -12.53431 -12.46731 -12.20649 -12.19168 -11.99823 -11.72994 -11.09067 -10.36006 -10.29741 -9.84199 -9.78770 -9.60771 -9.15877 -8.15435 -5.87419 -0.09710 0.38012 0.56170 1.49319 1.53086 1.59187 1.61588 2.26745 2.30872 2.57935 2.84540 3.03613 3.18313 3.26157 3.54747 3.74977 4.06299 4.12300 4.31814 4.40760 4.46207 4.54166 4.61363 4.65625 4.77716 4.85869 4.89854 4.95945 4.97110 5.01960 5.15081 5.16049 5.27061 5.38654 5.57201 5.65419 5.72380 5.95464 6.07072 6.27801 6.42461 6.53124 6.83721 7.04935 7.45690 7.76913 8.82328 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.006093 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.265109 B = 4594.710745 C = 6569.879418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.586 5.586 3 C 0.096 3.904 4 C 0.597 3.403 5 N -0.658 5.658 6 C 0.602 3.398 7 N -0.792 5.792 8 N -0.614 5.614 9 C 0.428 3.572 10 C 0.189 3.811 11 N -0.827 5.827 12 C -0.319 4.319 13 H 0.074 0.926 14 C 0.052 3.948 15 N -0.840 5.840 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.285 1.285 20 S 2.710 3.290 21 O -1.016 7.016 22 O -1.030 7.030 23 N -1.025 6.025 24 C 0.096 3.904 25 C 0.099 3.901 26 N -0.645 5.645 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.424 0.576 34 H 0.420 0.580 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.274 0.726 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 6.423 4.910 8.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.304 5.304 3 C -0.046 4.046 4 C 0.232 3.768 5 N -0.400 5.400 6 C 0.234 3.766 7 N -0.343 5.343 8 N -0.348 5.348 9 C 0.148 3.852 10 C 0.060 3.940 11 N -0.657 5.657 12 C -0.458 4.458 13 H 0.091 0.909 14 C -0.159 4.159 15 N -0.477 5.477 16 Si 0.782 3.218 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.211 1.211 20 S 2.731 3.269 21 O -1.000 7.000 22 O -1.014 7.014 23 N -0.863 5.863 24 C -0.049 4.049 25 C -0.047 4.047 26 N -0.380 5.380 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.258 0.742 34 H 0.253 0.747 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.355 7.223 4.605 8.573 hybrid contribution 1.276 -0.350 -0.431 1.392 sum 0.921 6.873 4.175 8.094 Atomic orbital electron populations 1.21726 0.76428 1.03499 1.02483 1.46142 1.06703 1.01738 1.75829 1.21867 0.98005 0.82019 1.02678 1.19446 0.84959 0.87397 0.84971 1.67831 1.08069 1.29614 1.34525 1.19571 0.88678 0.84240 0.84089 1.41518 0.99388 1.13338 1.80062 1.68548 1.10026 1.28523 1.27709 1.23640 0.86389 0.93600 0.81550 1.20107 0.98768 0.89659 0.85493 1.53218 1.19924 1.73076 1.19435 1.19104 0.96189 1.38951 0.91557 0.90854 1.25585 1.01325 0.92332 0.96687 1.69789 1.31368 1.28873 1.17696 0.85534 0.79968 0.78288 0.78028 1.19095 1.19835 1.21110 1.05821 0.73640 0.74536 0.72924 1.93428 1.72351 1.62641 1.71562 1.93368 1.87322 1.87351 1.33404 1.58319 1.70197 1.29868 1.27924 1.21503 0.95841 1.03257 0.84286 1.21429 1.01384 0.90692 0.91172 1.68578 1.41496 0.98282 1.29651 0.91932 0.88050 0.92788 0.90016 0.90747 0.90212 0.74232 0.74713 0.89886 0.85554 0.91581 0.92527 0.89262 0.92466 0.93619 0.88111 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.79 10.50 127.77 1.34 4.13 16 2 N -0.59 -18.34 3.36 -760.57 -2.56 -20.89 16 3 C 0.10 2.09 10.71 127.77 1.37 3.46 16 4 C 0.60 23.93 8.19 261.25 2.14 26.07 16 5 N -0.66 -24.94 9.02 -200.59 -1.81 -26.75 16 6 C 0.60 23.33 8.76 261.25 2.29 25.62 16 7 N -0.79 -22.33 9.05 -59.46 -0.54 -22.86 16 8 N -0.61 -27.44 10.04 -190.36 -1.91 -29.35 16 9 C 0.43 20.25 6.91 138.54 0.96 21.21 16 10 C 0.19 8.96 5.60 85.64 0.48 9.44 16 11 N -0.83 -41.52 3.01 -347.18 -1.04 -42.56 16 12 C -0.32 -16.86 8.87 84.03 0.75 -16.12 16 13 H 0.07 4.18 7.35 -2.91 -0.02 4.16 16 14 C 0.05 2.55 4.63 84.86 0.39 2.95 16 15 N -0.84 -40.57 11.10 21.65 0.24 -40.33 16 16 Si 0.96 40.51 29.62 68.60 2.03 42.54 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 S 2.71 132.38 6.00 -56.49 -0.34 132.04 16 21 O -1.02 -50.98 15.88 -128.00 -2.03 -53.01 16 22 O -1.03 -56.48 16.15 -128.00 -2.07 -58.55 16 23 N -1.02 -40.70 3.64 -562.68 -2.05 -42.75 16 24 C 0.10 3.07 10.26 127.77 1.31 4.38 16 25 C 0.10 3.46 10.30 127.77 1.32 4.78 16 26 N -0.64 -29.40 9.18 -190.36 -1.75 -31.15 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.05 1.91 7.37 -2.39 -0.02 1.89 16 30 H 0.08 1.96 6.80 -2.39 -0.02 1.95 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.42 9.06 8.95 -92.71 -0.83 8.23 16 34 H 0.42 11.15 8.95 -92.71 -0.83 10.32 16 35 H 0.08 3.75 7.09 -2.38 -0.02 3.74 16 36 H 0.13 6.17 5.48 -2.39 -0.01 6.16 16 37 H 0.27 12.49 8.31 -92.71 -0.77 11.72 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.09 2.30 7.92 -2.39 -0.02 2.28 16 40 H 0.06 1.89 7.79 -2.39 -0.02 1.87 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.10 2.66 7.79 -2.39 -0.02 2.64 16 43 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 Total: -1.00 -71.76 372.68 -2.07 -73.83 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.59 Total: 33.90 kcal Atomic # 6 Polarization: 73.57 SS G_CDS: 12.34 Total: 85.91 kcal Atomic # 7 Polarization: -245.24 SS G_CDS: -11.42 Total: -256.65 kcal Atomic # 8 Polarization: -107.46 SS G_CDS: -4.10 Total: -111.56 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 132.38 SS G_CDS: -0.34 Total: 132.04 kcal Total: -71.76 -2.07 -73.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329944929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.216 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds