Wall clock time and date at job start Wed Apr 1 2020 03:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34231 * 117.00317 * 2 1 4 4 O 1.20828 * 119.99909 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.50700 * 115.55106 * 67.25854 * 5 3 2 7 7 O 1.21280 * 119.99822 * 246.10617 * 6 5 3 8 8 N 1.34775 * 120.00200 * 66.10838 * 6 5 3 9 9 C 1.47576 * 134.49182 * 174.99242 * 8 6 5 10 10 C 1.53946 * 86.11929 * 155.35454 * 9 8 6 11 11 O 1.42896 * 113.74105 * 269.15479 * 10 9 8 12 12 C 1.50695 * 113.74323 * 137.95014 * 10 9 8 13 13 H 1.08001 * 120.00216 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99911 * 180.02562 * 12 10 9 15 15 N 1.31503 * 119.99993 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99675 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46644 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47212 * 300.00097 * 16 14 12 19 19 H 1.48496 * 109.46898 * 60.00217 * 16 14 12 20 20 C 1.47582 * 134.49310 * 354.98387 * 8 6 5 21 21 C 1.53000 * 117.49733 * 281.58090 * 5 3 2 22 22 C 1.53001 * 117.49870 * 212.92393 * 5 3 2 23 23 H 1.09000 * 117.50501 * 215.00278 * 22 5 3 24 24 C 1.50708 * 117.49888 * 0.02611 * 22 5 3 25 25 C 1.38234 * 120.00172 * 59.72184 * 24 22 5 26 26 C 1.38235 * 120.00149 * 179.79198 * 25 24 22 27 27 C 1.38230 * 119.99563 * 0.44055 * 26 25 24 28 28 C 1.38234 * 120.00423 * 359.81386 * 27 26 25 29 29 C 1.38233 * 120.00041 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47170 * 300.00378 * 1 2 3 32 32 H 1.08998 * 109.47316 * 59.99980 * 1 2 3 33 33 H 1.09003 * 113.77508 * 41.04949 * 9 8 6 34 34 H 1.09006 * 113.86928 * 269.66701 * 9 8 6 35 35 H 0.96702 * 114.00441 * 178.07380 * 11 10 9 36 36 H 0.97004 * 120.00131 * 179.97438 * 15 14 12 37 37 H 1.08992 * 113.76941 * 90.34136 * 20 8 6 38 38 H 1.09007 * 113.76641 * 318.94414 * 20 8 6 39 39 H 1.08998 * 117.49728 * 359.97438 * 21 5 3 40 40 H 1.08999 * 117.49518 * 144.97788 * 21 5 3 41 41 H 1.08009 * 119.99705 * 0.02562 * 25 24 22 42 42 H 1.08000 * 120.00154 * 180.27876 * 26 25 24 43 43 H 1.08005 * 119.99557 * 179.83506 * 27 26 25 44 44 H 1.08000 * 119.99866 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.00066 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2434 0.7837 -1.2530 7 8 4.9415 -0.2074 -1.2166 8 7 4.0732 1.4458 -2.4145 9 6 4.6363 1.3139 -3.7722 10 6 3.3511 2.0075 -4.2593 11 8 2.2967 1.1005 -4.5872 12 6 3.5883 3.0435 -5.3277 13 1 4.5912 3.2375 -5.6786 14 6 2.5252 3.7444 -5.8564 15 7 1.3042 3.5086 -5.4288 16 14 2.8194 5.0291 -7.1803 17 1 1.5235 5.6351 -7.5786 18 1 3.7194 6.0861 -6.6530 19 1 3.4491 4.3870 -8.3619 20 6 3.2487 2.5936 -2.8395 21 6 4.2855 1.0399 1.3304 22 6 4.2119 2.4495 0.7383 23 1 5.1264 2.8672 0.3170 24 6 3.2941 3.4389 1.4092 25 6 2.4243 3.0154 2.3965 26 6 1.5855 3.9237 3.0149 27 6 1.6103 5.2538 2.6396 28 6 2.4764 5.6764 1.6486 29 6 3.3183 4.7690 1.0332 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.7334 0.2819 -4.1094 34 1 5.5405 1.9009 -3.9336 35 1 1.4779 1.5332 -4.8655 36 1 0.5563 4.0020 -5.8005 37 1 3.7450 3.5572 -2.7251 38 1 2.2378 2.5833 -2.4318 39 1 3.6701 0.8289 2.2050 40 1 5.2482 0.5298 1.2987 41 1 2.4026 1.9754 2.6873 42 1 0.9091 3.5936 3.7894 43 1 0.9530 5.9630 3.1209 44 1 2.4954 6.7156 1.3551 45 1 3.9952 5.0992 0.2594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336496875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:17 Heat of formation + Delta-G solvation = -65.497759 kcal Electronic energy + Delta-G solvation = -31651.910043 eV Core-core repulsion = 27409.408700 eV Total energy + Delta-G solvation = -4242.501343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11179 -39.40333 -39.14303 -37.75363 -36.55629 -35.73339 -33.97922 -32.20756 -30.93901 -30.70359 -28.87446 -27.96540 -25.90623 -25.28495 -24.48400 -23.79963 -22.55262 -21.54820 -20.49841 -19.71568 -18.72940 -17.69888 -17.30366 -16.96721 -16.48219 -16.37574 -15.72319 -15.49712 -15.22171 -14.97598 -14.58179 -14.54087 -14.16991 -14.01229 -13.41491 -13.26701 -13.10351 -13.06584 -12.80816 -12.61018 -12.44069 -12.09568 -12.02525 -11.91593 -11.55391 -11.42724 -11.11759 -11.10754 -11.05179 -10.83450 -10.80077 -10.64639 -10.53685 -10.30522 -10.26704 -9.67171 -9.29093 -8.81586 -8.77416 -8.51823 -8.43708 -7.91842 -6.39240 -4.50069 1.33194 1.49581 2.22011 2.61829 2.94616 3.15981 3.19484 3.22338 3.25438 3.65070 4.02414 4.18131 4.36196 4.61132 4.67232 4.78491 4.83929 4.92049 5.00772 5.03597 5.15434 5.19109 5.30090 5.40364 5.46105 5.56705 5.58562 5.63381 5.73203 5.84987 5.95273 6.02808 6.08880 6.10827 6.34640 6.46473 6.49559 6.50698 6.56067 6.57110 6.64573 6.69989 7.05830 7.06911 7.62570 7.80200 7.88171 8.32663 8.52313 8.57733 9.20901 9.44156 10.67553 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.004290 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.633162 B = 6525.108703 C = 7492.058843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.503 3.497 4 O -0.471 6.471 5 C -0.145 4.145 6 C 0.571 3.429 7 O -0.545 6.545 8 N -0.622 5.622 9 C 0.113 3.887 10 C 0.240 3.760 11 O -0.573 6.573 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.908 3.092 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.080 3.920 21 C -0.121 4.121 22 C -0.066 4.066 23 H 0.130 0.870 24 C -0.041 4.041 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.098 4.098 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 1.175 15.159 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.343 3.657 4 O -0.356 6.356 5 C -0.149 4.149 6 C 0.357 3.643 7 O -0.424 6.424 8 N -0.354 5.354 9 C -0.009 4.009 10 C 0.198 3.802 11 O -0.385 6.385 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.129 4.129 15 N -0.536 5.536 16 Si 0.735 3.265 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.198 1.198 20 C -0.042 4.042 21 C -0.158 4.158 22 C -0.084 4.084 23 H 0.148 0.852 24 C -0.041 4.041 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.134 4.134 29 C -0.116 4.116 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.368 0.471 15.460 15.472 hybrid contribution -0.773 1.194 -0.873 1.668 sum -0.405 1.665 14.588 14.688 Atomic orbital electron populations 1.23285 0.76098 1.03645 1.02671 1.86520 1.23411 1.32864 1.83946 1.21785 0.88929 0.81785 0.73165 1.90735 1.65853 1.35819 1.43198 1.21028 0.89564 1.08007 0.96312 1.18347 0.80962 0.83334 0.81617 1.90660 1.41397 1.25565 1.84766 1.50158 1.44031 1.32869 1.08385 1.23541 0.98470 1.01478 0.77387 1.19823 0.84341 0.86402 0.89623 1.86052 1.26465 1.37060 1.88946 1.21436 0.94597 1.19862 1.21762 0.91030 1.25065 0.94783 0.96775 0.96302 1.69310 0.99055 1.42381 1.42874 0.86388 0.77697 0.80941 0.81492 1.20993 1.19874 1.19823 1.24394 0.94078 0.88392 0.97360 1.23332 1.02686 0.97087 0.92674 1.21327 0.99050 0.88536 0.99502 0.85200 1.18853 0.96121 0.93353 0.95792 1.20862 0.96049 0.99078 0.96597 1.20961 0.98922 0.93520 1.00081 1.21076 0.99022 0.95873 0.98015 1.21074 0.96202 0.99515 0.96585 1.20906 0.99286 0.92410 0.98964 0.88126 0.92084 0.91399 0.90844 0.89259 0.75170 0.91551 0.89951 0.91250 0.87087 0.85892 0.87000 0.86487 0.86422 0.86088 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.35 -6.04 10.56 -39.26 -0.41 -6.45 16 3 C 0.50 9.06 5.83 36.01 0.21 9.27 16 4 O -0.47 -9.03 13.38 -18.75 -0.25 -9.28 16 5 C -0.14 -2.48 2.14 -156.81 -0.34 -2.81 16 6 C 0.57 11.77 7.29 -10.99 -0.08 11.69 16 7 O -0.54 -12.34 17.44 5.56 0.10 -12.24 16 8 N -0.62 -13.35 3.61 -178.31 -0.64 -13.99 16 9 C 0.11 2.44 8.23 -2.98 -0.02 2.42 16 10 C 0.24 5.80 1.44 -90.85 -0.13 5.67 16 11 O -0.57 -14.99 13.48 -35.23 -0.48 -15.47 16 12 C -0.54 -13.47 8.62 -34.44 -0.30 -13.76 16 13 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 15 N -0.90 -23.02 11.09 55.43 0.61 -22.41 16 16 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 C 0.08 1.79 7.92 -2.97 -0.02 1.77 16 21 C -0.12 -1.59 9.10 -26.69 -0.24 -1.83 16 22 C -0.07 -0.93 5.74 -91.73 -0.53 -1.46 16 23 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 24 C -0.04 -0.58 4.12 -104.62 -0.43 -1.01 16 25 C -0.11 -1.42 7.28 -39.58 -0.29 -1.71 16 26 C -0.12 -1.41 10.05 -39.59 -0.40 -1.80 16 27 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 28 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 29 C -0.10 -1.34 9.74 -39.58 -0.39 -1.72 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 35 H 0.39 10.42 6.46 45.56 0.29 10.72 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 38 H 0.07 1.67 7.30 -51.92 -0.38 1.29 16 39 H 0.11 1.23 6.18 -51.93 -0.32 0.91 16 40 H 0.12 1.53 8.01 -51.93 -0.42 1.11 16 41 H 0.11 1.34 5.93 -52.48 -0.31 1.03 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -30.72 383.06 -8.42 -39.14 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -5.32 Total: 16.13 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.78 Total: 4.34 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.03 Total: -36.40 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.04 Total: -43.44 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.72 -8.42 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336496875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.359 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds