Wall clock time and date at job start Wed Apr 1 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34231 * 117.00317 * 2 1 4 4 O 1.20828 * 119.99909 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00179 * 179.97438 * 3 2 1 6 6 C 1.50700 * 115.55106 * 67.25854 * 5 3 2 7 7 O 1.21280 * 119.99822 * 246.10617 * 6 5 3 8 8 N 1.34775 * 120.00200 * 66.10838 * 6 5 3 9 9 C 1.47576 * 134.49182 * 174.99242 * 8 6 5 10 10 C 1.53946 * 86.11929 * 155.35454 * 9 8 6 11 11 O 1.42896 * 113.74105 * 269.15479 * 10 9 8 12 12 C 1.50695 * 113.74323 * 137.95014 * 10 9 8 13 13 H 1.08001 * 120.00216 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99911 * 180.02562 * 12 10 9 15 15 N 1.31503 * 119.99993 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99675 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46644 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47212 * 300.00097 * 16 14 12 19 19 H 1.48496 * 109.46898 * 60.00217 * 16 14 12 20 20 C 1.47582 * 134.49310 * 354.98387 * 8 6 5 21 21 C 1.53000 * 117.49733 * 281.58090 * 5 3 2 22 22 C 1.53001 * 117.49870 * 212.92393 * 5 3 2 23 23 H 1.09000 * 117.50501 * 215.00278 * 22 5 3 24 24 C 1.50708 * 117.49888 * 0.02611 * 22 5 3 25 25 C 1.38234 * 120.00172 * 59.72184 * 24 22 5 26 26 C 1.38235 * 120.00149 * 179.79198 * 25 24 22 27 27 C 1.38230 * 119.99563 * 0.44055 * 26 25 24 28 28 C 1.38234 * 120.00423 * 359.81386 * 27 26 25 29 29 C 1.38233 * 120.00041 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47170 * 300.00378 * 1 2 3 32 32 H 1.08998 * 109.47316 * 59.99980 * 1 2 3 33 33 H 1.09003 * 113.77508 * 41.04949 * 9 8 6 34 34 H 1.09006 * 113.86928 * 269.66701 * 9 8 6 35 35 H 0.96702 * 114.00441 * 178.07380 * 11 10 9 36 36 H 0.97004 * 120.00131 * 179.97438 * 15 14 12 37 37 H 1.08992 * 113.76941 * 90.34136 * 20 8 6 38 38 H 1.09007 * 113.76641 * 318.94414 * 20 8 6 39 39 H 1.08998 * 117.49728 * 359.97438 * 21 5 3 40 40 H 1.08999 * 117.49518 * 144.97788 * 21 5 3 41 41 H 1.08009 * 119.99705 * 0.02562 * 25 24 22 42 42 H 1.08000 * 120.00154 * 180.27876 * 26 25 24 43 43 H 1.08005 * 119.99557 * 179.83506 * 27 26 25 44 44 H 1.08000 * 119.99866 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.00066 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2434 0.7837 -1.2530 7 8 4.9415 -0.2074 -1.2166 8 7 4.0732 1.4458 -2.4145 9 6 4.6363 1.3139 -3.7722 10 6 3.3511 2.0075 -4.2593 11 8 2.2967 1.1005 -4.5872 12 6 3.5883 3.0435 -5.3277 13 1 4.5912 3.2375 -5.6786 14 6 2.5252 3.7444 -5.8564 15 7 1.3042 3.5086 -5.4288 16 14 2.8194 5.0291 -7.1803 17 1 1.5235 5.6351 -7.5786 18 1 3.7194 6.0861 -6.6530 19 1 3.4491 4.3870 -8.3619 20 6 3.2487 2.5936 -2.8395 21 6 4.2855 1.0399 1.3304 22 6 4.2119 2.4495 0.7383 23 1 5.1264 2.8672 0.3170 24 6 3.2941 3.4389 1.4092 25 6 2.4243 3.0154 2.3965 26 6 1.5855 3.9237 3.0149 27 6 1.6103 5.2538 2.6396 28 6 2.4764 5.6764 1.6486 29 6 3.3183 4.7690 1.0332 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.7334 0.2819 -4.1094 34 1 5.5405 1.9009 -3.9336 35 1 1.4779 1.5332 -4.8655 36 1 0.5563 4.0020 -5.8005 37 1 3.7450 3.5572 -2.7251 38 1 2.2378 2.5833 -2.4318 39 1 3.6701 0.8289 2.2050 40 1 5.2482 0.5298 1.2987 41 1 2.4026 1.9754 2.6873 42 1 0.9091 3.5936 3.7894 43 1 0.9530 5.9630 3.1209 44 1 2.4954 6.7156 1.3551 45 1 3.9952 5.0992 0.2594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336496875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:16 Heat of formation + Delta-G solvation = -83.982477 kcal Electronic energy + Delta-G solvation = -31652.711600 eV Core-core repulsion = 27409.408700 eV Total energy + Delta-G solvation = -4243.302901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42745 -41.01936 -40.26589 -39.30763 -37.87379 -37.05946 -35.89194 -34.16781 -31.91200 -31.72248 -30.55888 -29.12408 -27.60920 -27.09724 -25.83697 -24.84901 -23.60996 -22.92343 -21.69228 -21.21560 -20.25572 -19.46777 -18.81633 -18.22212 -17.84599 -17.76808 -17.29727 -16.98520 -16.63510 -16.27774 -16.06878 -15.94247 -15.60507 -15.23439 -14.80603 -14.60357 -14.48557 -14.29489 -14.20010 -14.03215 -13.83708 -13.72804 -13.43197 -13.15080 -13.02185 -12.88243 -12.77958 -12.56039 -12.28615 -12.25126 -12.12254 -11.98489 -11.88534 -11.86908 -11.55992 -11.32842 -11.03229 -10.67341 -10.34421 -9.76614 -9.70042 -9.48919 -8.28719 -6.46646 0.34864 0.54557 0.83364 1.24877 1.47001 1.48447 1.56205 1.62421 1.69074 2.38143 2.44357 2.90943 2.95852 3.16407 3.33944 3.48604 3.64867 3.70857 3.78065 4.00300 4.11157 4.11332 4.19808 4.24186 4.27569 4.33485 4.40934 4.53482 4.54293 4.59247 4.63699 4.70385 4.75848 4.82391 4.85712 4.86831 5.09814 5.16115 5.16590 5.19621 5.57508 5.63639 5.66828 5.69780 5.87931 6.13842 6.54806 6.59381 6.64519 6.91679 7.26725 7.39785 8.77359 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.004290 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.633162 B = 6525.108703 C = 7492.058843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.503 3.497 4 O -0.489 6.489 5 C -0.175 4.175 6 C 0.569 3.431 7 O -0.569 6.569 8 N -0.625 5.625 9 C 0.115 3.885 10 C 0.219 3.781 11 O -0.587 6.587 12 C -0.555 4.555 13 H 0.078 0.922 14 C 0.032 3.968 15 N -0.919 5.919 16 Si 0.970 3.030 17 H -0.285 1.285 18 H -0.265 1.265 19 H -0.272 1.272 20 C 0.101 3.899 21 C -0.096 4.096 22 C -0.055 4.055 23 H 0.136 0.864 24 C -0.058 4.058 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.118 4.118 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.387 0.613 36 H 0.275 0.725 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 2.077 16.438 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.345 3.655 4 O -0.375 6.375 5 C -0.179 4.179 6 C 0.358 3.642 7 O -0.449 6.449 8 N -0.357 5.357 9 C -0.007 4.007 10 C 0.178 3.822 11 O -0.400 6.400 12 C -0.593 4.593 13 H 0.096 0.904 14 C -0.169 4.169 15 N -0.560 5.560 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.190 1.190 19 H -0.197 1.197 20 C -0.022 4.022 21 C -0.133 4.133 22 C -0.074 4.074 23 H 0.154 0.846 24 C -0.058 4.058 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.528 1.360 16.754 16.818 hybrid contribution -0.878 0.872 -1.245 1.755 sum -0.350 2.232 15.509 15.672 Atomic orbital electron populations 1.23575 0.74223 1.05820 1.02583 1.86507 1.25395 1.32652 1.83683 1.21919 0.89240 0.81720 0.72655 1.90711 1.66349 1.36338 1.44099 1.21000 0.89219 1.11536 0.96140 1.18864 0.80542 0.82613 0.82202 1.90632 1.42596 1.26394 1.85324 1.50151 1.44018 1.32759 1.08813 1.23560 0.98316 1.01164 0.77620 1.20141 0.84764 0.86838 0.90451 1.86037 1.26763 1.38005 1.89150 1.21704 0.95099 1.20188 1.22297 0.90355 1.25799 0.94496 0.98496 0.98077 1.69396 0.99687 1.43114 1.43780 0.85413 0.77508 0.78683 0.78896 1.21013 1.19020 1.19666 1.24065 0.93137 0.88940 0.96088 1.23536 1.02630 0.96042 0.91063 1.21432 0.98727 0.88767 0.98431 0.84618 1.18932 0.96848 0.93426 0.96549 1.21059 0.96099 0.99838 0.96585 1.21319 0.98844 0.93571 1.00362 1.21447 0.98838 0.96430 0.97552 1.21373 0.96013 1.00296 0.96685 1.21108 1.00069 0.92847 0.99544 0.84910 0.90409 0.93227 0.91663 0.86828 0.75824 0.91506 0.89079 0.93469 0.84808 0.84986 0.86154 0.84128 0.83885 0.84386 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -12.45 10.56 -51.42 -0.54 -12.99 16 3 C 0.50 18.03 5.83 71.24 0.42 18.44 16 4 O -0.49 -18.75 13.38 21.96 0.29 -18.45 16 5 C -0.17 -5.89 2.14 -53.67 -0.11 -6.01 16 6 C 0.57 23.48 7.29 87.66 0.64 24.12 16 7 O -0.57 -25.72 17.44 -3.03 -0.05 -25.77 16 8 N -0.63 -27.00 3.61 -840.26 -3.03 -30.03 16 9 C 0.11 4.99 8.23 86.48 0.71 5.71 16 10 C 0.22 10.74 1.44 -10.88 -0.02 10.72 16 11 O -0.59 -31.60 13.48 -148.98 -2.01 -33.61 16 12 C -0.56 -27.70 8.62 25.60 0.22 -27.48 16 13 H 0.08 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.03 1.58 5.40 84.66 0.46 2.04 16 15 N -0.92 -47.70 11.09 21.45 0.24 -47.46 16 16 Si 0.97 39.48 29.54 68.60 2.03 41.51 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.10 4.56 7.92 86.48 0.68 5.24 16 21 C -0.10 -2.37 9.10 30.62 0.28 -2.09 16 22 C -0.06 -1.51 5.74 -11.51 -0.07 -1.58 16 23 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 24 C -0.06 -1.56 4.12 -19.86 -0.08 -1.64 16 25 C -0.12 -2.91 7.28 22.27 0.16 -2.75 16 26 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 27 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 28 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 29 C -0.12 -3.14 9.74 22.27 0.22 -2.92 16 30 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.11 4.32 8.09 -2.38 -0.02 4.30 16 35 H 0.39 21.26 6.46 -74.06 -0.48 20.78 16 36 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.09 3.91 8.09 -2.39 -0.02 3.89 16 38 H 0.05 2.34 7.30 -2.38 -0.02 2.32 16 39 H 0.13 2.64 6.18 -2.39 -0.01 2.63 16 40 H 0.13 3.02 8.01 -2.39 -0.02 3.00 16 41 H 0.12 2.65 5.93 -2.91 -0.02 2.63 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 44 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 45 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.04 383.06 2.85 -63.19 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: 0.55 Total: 47.47 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.38 Total: 16.15 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.79 Total: -77.49 kcal Atomic # 8 Polarization: -88.52 SS G_CDS: -2.31 Total: -90.83 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -66.04 2.85 -63.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336496875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.788 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds