Wall clock time and date at job start Wed Apr 1 2020 03:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99830 * 2 1 4 4 O 1.20829 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.50690 * 115.55215 * 292.66691 * 5 3 2 7 7 O 1.21280 * 120.00204 * 265.47167 * 6 5 3 8 8 N 1.34774 * 120.00153 * 85.46785 * 6 5 3 9 9 C 1.47587 * 134.49224 * 174.96031 * 8 6 5 10 10 C 1.53944 * 86.23892 * 204.69816 * 9 8 6 11 11 O 1.42897 * 113.74204 * 90.68899 * 10 9 8 12 12 C 1.50700 * 113.73982 * 221.88739 * 10 9 8 13 13 H 1.07999 * 120.00398 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00158 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00391 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99798 * 0.02562 * 14 12 10 17 17 H 1.48493 * 109.47204 * 89.99829 * 16 14 12 18 18 H 1.48496 * 109.46905 * 209.99953 * 16 14 12 19 19 H 1.48500 * 109.47185 * 329.99584 * 16 14 12 20 20 C 1.47934 * 134.63372 * 355.04649 * 8 6 5 21 21 C 1.53003 * 117.49357 * 78.33439 * 5 3 2 22 22 C 1.52998 * 117.51625 * 146.96083 * 5 3 2 23 23 H 1.09000 * 117.49597 * 145.03078 * 22 5 3 24 24 C 1.50701 * 117.50176 * 0.02562 * 22 5 3 25 25 C 1.38238 * 119.99717 * 299.72569 * 24 22 5 26 26 C 1.38239 * 119.99849 * 179.76379 * 25 24 22 27 27 C 1.38243 * 119.99798 * 0.48240 * 26 25 24 28 28 C 1.38229 * 119.99930 * 359.79410 * 27 26 25 29 29 C 1.38231 * 120.00178 * 119.99748 * 24 22 5 30 30 H 1.09004 * 109.46951 * 300.00226 * 1 2 3 31 31 H 1.09000 * 109.47514 * 59.99893 * 1 2 3 32 32 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09004 * 113.76620 * 90.34433 * 9 8 6 34 34 H 1.09001 * 113.77164 * 319.05956 * 9 8 6 35 35 H 0.96703 * 113.99833 * 180.02562 * 11 10 9 36 36 H 0.96994 * 120.00334 * 180.02562 * 15 14 12 37 37 H 1.09005 * 113.76445 * 40.99944 * 20 8 6 38 38 H 1.08999 * 113.87193 * 269.61810 * 20 8 6 39 39 H 1.08997 * 117.49426 * 214.99847 * 21 5 3 40 40 H 1.08991 * 117.50206 * 0.02562 * 21 5 3 41 41 H 1.07996 * 120.00370 * 359.97438 * 25 24 22 42 42 H 1.07996 * 119.99988 * 180.25387 * 26 25 24 43 43 H 1.07995 * 119.99572 * 179.76638 * 27 26 25 44 44 H 1.08000 * 120.00064 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.00099 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2423 0.7860 1.2555 7 8 4.5376 1.5718 2.1308 8 7 4.5187 -0.5246 1.4052 9 6 5.2325 -1.3216 2.4218 10 6 5.4704 -2.3504 1.3016 11 8 6.6856 -2.1432 0.5788 12 6 5.2848 -3.7798 1.7413 13 1 5.0101 -3.9994 2.7624 14 6 5.4667 -4.8074 0.8401 15 7 5.3053 -6.0549 1.2239 16 14 5.9440 -4.4277 -0.9255 17 1 7.4239 -4.3954 -1.0423 18 1 5.3995 -5.4787 -1.8223 19 1 5.3877 -3.1073 -1.3157 20 6 4.2315 -1.7439 0.6182 21 6 4.2866 1.0375 -1.3283 22 6 4.2130 2.4477 -0.7392 23 1 5.1274 2.8656 -0.3181 24 6 3.2962 3.4363 -1.4125 25 6 2.4345 3.0134 -2.4072 26 6 1.5901 3.9193 -3.0214 27 6 1.6145 5.2501 -2.6478 28 6 2.4802 5.6740 -1.6571 29 6 3.3210 4.7671 -1.0392 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.5910 -1.6862 3.2241 34 1 6.1453 -0.8512 2.7875 35 1 6.8386 -2.7873 -0.1261 36 1 5.4336 -6.7778 0.5901 37 1 4.3449 -1.6092 -0.4575 38 1 3.2963 -2.2337 0.8892 39 1 5.2494 0.5278 -1.2947 40 1 3.6720 0.8248 -2.2029 41 1 2.4186 1.9746 -2.7022 42 1 0.9140 3.5881 -3.7957 43 1 0.9575 5.9585 -3.1303 44 1 2.4996 6.7137 -1.3654 45 1 3.9975 5.0984 -0.2654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336496877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:22 Heat of formation + Delta-G solvation = -48.433446 kcal Electronic energy + Delta-G solvation = -31304.671077 eV Core-core repulsion = 27062.909698 eV Total energy + Delta-G solvation = -4241.761379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26461 -39.69962 -39.30833 -37.97720 -36.71452 -36.01302 -34.54476 -32.58993 -31.09665 -30.87741 -29.04214 -28.15369 -26.14831 -25.47437 -24.63973 -23.99921 -22.66910 -21.74172 -20.61818 -19.92492 -18.93675 -17.89657 -17.39393 -17.16914 -16.80444 -16.43141 -16.37193 -15.88252 -15.56511 -15.21380 -14.84211 -14.66074 -14.13172 -13.78612 -13.75151 -13.47695 -13.28069 -13.25002 -13.08537 -12.91970 -12.74334 -12.39911 -12.26556 -12.16934 -12.09791 -11.57772 -11.33700 -11.19506 -11.06542 -10.96398 -10.89706 -10.84029 -10.64023 -10.37025 -10.17719 -9.83442 -9.37684 -9.08100 -8.94874 -8.75948 -8.62785 -8.14747 -6.46336 -4.52730 1.20749 1.36485 1.95470 2.40507 2.91540 2.94998 2.97174 3.10899 3.20977 3.34366 3.84826 3.98385 4.25556 4.40859 4.55891 4.61948 4.70559 4.77896 4.88878 4.92124 5.01888 5.03624 5.05764 5.10723 5.32710 5.34854 5.45254 5.48716 5.55601 5.63184 5.77995 5.90629 5.93880 5.97173 6.02815 6.24362 6.27063 6.28388 6.36255 6.38476 6.43425 6.53278 6.57375 6.93089 7.14024 7.67472 7.96774 8.11380 8.39489 8.46168 8.57815 9.10633 10.65854 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003399 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.002649 B = 8235.200952 C = 8351.109676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.505 3.495 4 O -0.478 6.478 5 C -0.146 4.146 6 C 0.572 3.428 7 O -0.542 6.542 8 N -0.621 5.621 9 C 0.128 3.872 10 C 0.195 3.805 11 O -0.553 6.553 12 C -0.536 4.536 13 H 0.092 0.908 14 C 0.080 3.920 15 N -0.875 5.875 16 Si 0.858 3.142 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.255 1.255 20 C 0.071 3.929 21 C -0.135 4.135 22 C -0.054 4.054 23 H 0.134 0.866 24 C -0.040 4.040 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.118 4.118 29 C -0.099 4.099 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.352 0.648 36 H 0.271 0.729 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 14.540 -9.677 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.346 3.654 4 O -0.363 6.363 5 C -0.150 4.150 6 C 0.359 3.641 7 O -0.420 6.420 8 N -0.354 5.354 9 C 0.007 3.993 10 C 0.154 3.846 11 O -0.364 6.364 12 C -0.574 4.574 13 H 0.110 0.890 14 C -0.125 4.125 15 N -0.511 5.511 16 Si 0.686 3.314 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.180 1.180 20 C -0.052 4.052 21 C -0.172 4.172 22 C -0.072 4.072 23 H 0.152 0.848 24 C -0.041 4.041 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.204 0.796 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.444 15.719 -8.866 19.522 hybrid contribution -0.239 -0.521 -1.265 1.389 sum -7.682 15.198 -10.130 19.814 Atomic orbital electron populations 1.23307 0.76033 1.04000 1.02379 1.86568 1.23417 1.32510 1.83780 1.21803 0.88841 0.81800 0.73004 1.90704 1.65889 1.36050 1.43654 1.20982 0.89351 1.08221 0.96488 1.18318 0.78880 0.81448 0.85473 1.90690 1.54483 1.54637 1.42193 1.50132 1.54048 1.03965 1.27264 1.23380 0.95392 0.87770 0.92777 1.20552 0.81093 0.94383 0.88565 1.86463 1.42375 1.56652 1.50944 1.21203 1.49127 0.87121 0.99923 0.89014 1.25007 0.93948 0.95045 0.98523 1.69848 1.46753 0.98813 1.35650 0.87349 0.79654 0.78953 0.85433 1.19306 1.20986 1.18030 1.24725 1.02420 0.81198 0.96810 1.23458 1.02767 0.97851 0.93141 1.21263 0.99050 0.88380 0.98553 0.84843 1.18878 0.96062 0.93431 0.95680 1.20910 0.95987 0.99286 0.96460 1.20992 0.98843 0.93516 1.00036 1.21086 0.99115 0.95868 0.97999 1.21070 0.96364 0.99410 0.96770 1.20914 0.99251 0.92415 0.99166 0.91899 0.91958 0.87687 0.88555 0.90389 0.79569 0.91848 0.91145 0.88317 0.85847 0.86899 0.86835 0.86359 0.86360 0.86121 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -5.15 10.57 -39.26 -0.41 -5.56 16 3 C 0.50 8.15 6.31 36.01 0.23 8.38 16 4 O -0.48 -8.23 13.89 -18.75 -0.26 -8.49 16 5 C -0.15 -2.35 2.11 -156.81 -0.33 -2.68 16 6 C 0.57 11.08 7.17 -10.99 -0.08 11.00 16 7 O -0.54 -11.99 17.79 5.56 0.10 -11.89 16 8 N -0.62 -12.03 3.62 -177.23 -0.64 -12.67 16 9 C 0.13 2.56 8.22 -2.97 -0.02 2.53 16 10 C 0.20 4.20 1.05 -90.84 -0.10 4.11 16 11 O -0.55 -12.16 13.31 -35.23 -0.47 -12.63 16 12 C -0.54 -13.27 9.21 -34.44 -0.32 -13.59 16 13 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 14 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.88 -23.79 13.96 55.43 0.77 -23.01 16 16 Si 0.86 17.97 24.34 -169.99 -4.14 13.83 16 17 H -0.27 -5.47 7.05 56.52 0.40 -5.07 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.26 -4.88 5.30 56.52 0.30 -4.58 16 20 C 0.07 1.36 7.21 -2.78 -0.02 1.34 16 21 C -0.14 -1.77 8.76 -26.73 -0.23 -2.00 16 22 C -0.05 -0.75 5.71 -91.77 -0.52 -1.28 16 23 H 0.13 1.80 8.14 -51.93 -0.42 1.37 16 24 C -0.04 -0.54 4.10 -104.62 -0.43 -0.97 16 25 C -0.11 -1.35 7.33 -39.58 -0.29 -1.64 16 26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 29 C -0.10 -1.25 9.74 -39.58 -0.39 -1.63 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.82 8.09 -51.93 -0.42 1.39 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.35 7.40 3.31 45.56 0.15 7.56 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 38 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 39 H 0.12 1.62 8.14 -51.93 -0.42 1.19 16 40 H 0.11 1.25 6.17 -51.93 -0.32 0.93 16 41 H 0.11 1.30 5.95 -52.49 -0.31 0.99 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -31.28 375.53 -7.67 -38.95 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.55 Total: 13.92 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.73 Total: 1.90 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.13 Total: -35.69 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.05 Total: -38.57 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.14 Total: 13.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.28 -7.67 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336496877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.486 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds