Wall clock time and date at job start Wed Apr 1 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99830 * 2 1 4 4 O 1.20829 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99835 * 179.97438 * 3 2 1 6 6 C 1.50690 * 115.55215 * 292.66691 * 5 3 2 7 7 O 1.21280 * 120.00204 * 265.47167 * 6 5 3 8 8 N 1.34774 * 120.00153 * 85.46785 * 6 5 3 9 9 C 1.47587 * 134.49224 * 174.96031 * 8 6 5 10 10 C 1.53944 * 86.23892 * 204.69816 * 9 8 6 11 11 O 1.42897 * 113.74204 * 90.68899 * 10 9 8 12 12 C 1.50700 * 113.73982 * 221.88739 * 10 9 8 13 13 H 1.07999 * 120.00398 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00158 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00391 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99798 * 0.02562 * 14 12 10 17 17 H 1.48493 * 109.47204 * 89.99829 * 16 14 12 18 18 H 1.48496 * 109.46905 * 209.99953 * 16 14 12 19 19 H 1.48500 * 109.47185 * 329.99584 * 16 14 12 20 20 C 1.47934 * 134.63372 * 355.04649 * 8 6 5 21 21 C 1.53003 * 117.49357 * 78.33439 * 5 3 2 22 22 C 1.52998 * 117.51625 * 146.96083 * 5 3 2 23 23 H 1.09000 * 117.49597 * 145.03078 * 22 5 3 24 24 C 1.50701 * 117.50176 * 0.02562 * 22 5 3 25 25 C 1.38238 * 119.99717 * 299.72569 * 24 22 5 26 26 C 1.38239 * 119.99849 * 179.76379 * 25 24 22 27 27 C 1.38243 * 119.99798 * 0.48240 * 26 25 24 28 28 C 1.38229 * 119.99930 * 359.79410 * 27 26 25 29 29 C 1.38231 * 120.00178 * 119.99748 * 24 22 5 30 30 H 1.09004 * 109.46951 * 300.00226 * 1 2 3 31 31 H 1.09000 * 109.47514 * 59.99893 * 1 2 3 32 32 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09004 * 113.76620 * 90.34433 * 9 8 6 34 34 H 1.09001 * 113.77164 * 319.05956 * 9 8 6 35 35 H 0.96703 * 113.99833 * 180.02562 * 11 10 9 36 36 H 0.96994 * 120.00334 * 180.02562 * 15 14 12 37 37 H 1.09005 * 113.76445 * 40.99944 * 20 8 6 38 38 H 1.08999 * 113.87193 * 269.61810 * 20 8 6 39 39 H 1.08997 * 117.49426 * 214.99847 * 21 5 3 40 40 H 1.08991 * 117.50206 * 0.02562 * 21 5 3 41 41 H 1.07996 * 120.00370 * 359.97438 * 25 24 22 42 42 H 1.07996 * 119.99988 * 180.25387 * 26 25 24 43 43 H 1.07995 * 119.99572 * 179.76638 * 27 26 25 44 44 H 1.08000 * 120.00064 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.00099 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.2423 0.7860 1.2555 7 8 4.5376 1.5718 2.1308 8 7 4.5187 -0.5246 1.4052 9 6 5.2325 -1.3216 2.4218 10 6 5.4704 -2.3504 1.3016 11 8 6.6856 -2.1432 0.5788 12 6 5.2848 -3.7798 1.7413 13 1 5.0101 -3.9994 2.7624 14 6 5.4667 -4.8074 0.8401 15 7 5.3053 -6.0549 1.2239 16 14 5.9440 -4.4277 -0.9255 17 1 7.4239 -4.3954 -1.0423 18 1 5.3995 -5.4787 -1.8223 19 1 5.3877 -3.1073 -1.3157 20 6 4.2315 -1.7439 0.6182 21 6 4.2866 1.0375 -1.3283 22 6 4.2130 2.4477 -0.7392 23 1 5.1274 2.8656 -0.3181 24 6 3.2962 3.4363 -1.4125 25 6 2.4345 3.0134 -2.4072 26 6 1.5901 3.9193 -3.0214 27 6 1.6145 5.2501 -2.6478 28 6 2.4802 5.6740 -1.6571 29 6 3.3210 4.7671 -1.0392 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.5910 -1.6862 3.2241 34 1 6.1453 -0.8512 2.7875 35 1 6.8386 -2.7873 -0.1261 36 1 5.4336 -6.7778 0.5901 37 1 4.3449 -1.6092 -0.4575 38 1 3.2963 -2.2337 0.8892 39 1 5.2494 0.5278 -1.2947 40 1 3.6720 0.8248 -2.2029 41 1 2.4186 1.9746 -2.7022 42 1 0.9140 3.5881 -3.7957 43 1 0.9575 5.9585 -3.1303 44 1 2.4996 6.7137 -1.3654 45 1 3.9975 5.0984 -0.2654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336496877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:21 Heat of formation + Delta-G solvation = -68.681495 kcal Electronic energy + Delta-G solvation = -31305.549099 eV Core-core repulsion = 27062.909698 eV Total energy + Delta-G solvation = -4242.639400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45735 -41.18788 -40.29820 -39.41298 -37.88886 -37.19403 -36.24497 -34.51480 -32.01567 -31.77230 -30.60816 -29.12524 -27.76286 -27.10308 -25.92672 -24.92967 -23.62510 -22.96653 -21.84082 -21.21907 -20.31312 -19.50362 -18.88807 -18.28660 -18.15059 -17.94931 -17.53412 -17.29231 -16.64865 -16.41609 -16.06427 -15.63339 -15.53413 -15.31337 -15.12570 -14.78752 -14.62247 -14.35311 -14.26161 -14.15435 -14.04996 -13.85502 -13.79267 -13.14265 -13.07221 -12.94236 -12.73121 -12.54703 -12.38681 -12.14585 -12.05599 -11.90712 -11.87484 -11.81854 -11.50441 -11.41738 -11.08810 -10.88602 -10.48542 -9.79334 -9.77323 -9.52016 -8.39229 -6.52252 0.32658 0.51954 0.71795 1.19693 1.28683 1.32984 1.45295 1.60700 1.80307 2.21800 2.24956 2.78452 2.89843 3.12296 3.24267 3.34497 3.48111 3.65223 3.77690 3.85928 3.99817 4.09775 4.22272 4.25779 4.27503 4.29931 4.36927 4.43348 4.50464 4.58446 4.64695 4.65650 4.70250 4.73189 4.78098 4.85031 4.96181 5.07258 5.14254 5.16640 5.30027 5.55538 5.61395 5.65249 6.06059 6.11588 6.51900 6.54823 6.58962 6.70958 6.88464 7.15959 8.76148 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003399 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.002649 B = 8235.200952 C = 8351.109676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.508 3.492 4 O -0.494 6.494 5 C -0.168 4.168 6 C 0.572 3.428 7 O -0.577 6.577 8 N -0.619 5.619 9 C 0.123 3.877 10 C 0.190 3.810 11 O -0.556 6.556 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.027 3.973 15 N -0.925 5.925 16 Si 0.916 3.084 17 H -0.257 1.257 18 H -0.284 1.284 19 H -0.222 1.222 20 C 0.085 3.915 21 C -0.115 4.115 22 C -0.050 4.050 23 H 0.130 0.870 24 C -0.059 4.059 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.357 0.643 36 H 0.273 0.727 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 15.951 -12.683 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.349 3.651 4 O -0.380 6.380 5 C -0.173 4.173 6 C 0.360 3.640 7 O -0.458 6.458 8 N -0.351 5.351 9 C 0.001 3.999 10 C 0.149 3.851 11 O -0.368 6.368 12 C -0.581 4.581 13 H 0.073 0.927 14 C -0.174 4.174 15 N -0.562 5.562 16 Si 0.740 3.260 17 H -0.183 1.183 18 H -0.210 1.210 19 H -0.145 1.145 20 C -0.037 4.037 21 C -0.151 4.151 22 C -0.068 4.068 23 H 0.148 0.852 24 C -0.059 4.059 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.138 4.138 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.210 0.790 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.362 17.138 -11.873 22.464 hybrid contribution 0.000 -0.957 -0.205 0.979 sum -8.362 16.181 -12.078 21.855 Atomic orbital electron populations 1.23618 0.74059 1.05903 1.02781 1.86548 1.25412 1.31836 1.83398 1.21755 0.88745 0.81937 0.72639 1.90686 1.66198 1.36616 1.44519 1.20914 0.89527 1.10737 0.96089 1.18815 0.78213 0.80777 0.86174 1.90664 1.55950 1.55345 1.43819 1.50090 1.53890 1.04264 1.26900 1.23370 0.95768 0.87766 0.92962 1.20501 0.82015 0.92758 0.89830 1.86462 1.42594 1.56633 1.51151 1.21311 1.48933 0.89286 0.98594 0.92662 1.25852 0.93651 0.94497 1.03400 1.69998 1.48561 1.00119 1.37542 0.86377 0.79968 0.80285 0.79373 1.18251 1.21018 1.14511 1.24542 1.00989 0.80453 0.97705 1.23620 1.02580 0.96891 0.92024 1.21324 0.98759 0.88822 0.97916 0.85231 1.18942 0.96830 0.93545 0.96552 1.21077 0.96117 1.00020 0.96451 1.21345 0.98737 0.93652 1.00293 1.21471 0.98915 0.96341 0.97495 1.21386 0.95892 1.00292 0.96637 1.21122 1.00093 0.92801 0.99790 0.92389 0.90716 0.85081 0.88126 0.90572 0.79042 0.91735 0.89039 0.87987 0.85511 0.84512 0.86081 0.84090 0.83693 0.84035 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -9.83 10.57 -51.43 -0.54 -10.37 16 3 C 0.51 15.61 6.31 71.24 0.45 16.06 16 4 O -0.49 -16.39 13.89 21.96 0.30 -16.08 16 5 C -0.17 -5.18 2.11 -53.67 -0.11 -5.29 16 6 C 0.57 21.75 7.17 87.65 0.63 22.38 16 7 O -0.58 -25.73 17.79 -3.03 -0.05 -25.79 16 8 N -0.62 -23.35 3.62 -836.44 -3.03 -26.38 16 9 C 0.12 4.92 8.22 86.48 0.71 5.64 16 10 C 0.19 8.01 1.05 -10.89 -0.01 8.00 16 11 O -0.56 -23.34 13.31 -148.98 -1.98 -25.32 16 12 C -0.54 -27.27 9.21 25.60 0.24 -27.03 16 13 H 0.06 3.09 8.06 -2.91 -0.02 3.06 16 14 C 0.03 1.37 5.47 84.66 0.46 1.83 16 15 N -0.92 -51.32 13.96 21.45 0.30 -51.02 16 16 Si 0.92 35.57 24.34 68.60 1.67 37.24 16 17 H -0.26 -9.58 7.05 99.48 0.70 -8.88 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.22 -7.34 5.30 99.48 0.53 -6.81 16 20 C 0.09 3.09 7.21 86.41 0.62 3.71 16 21 C -0.11 -2.69 8.76 30.60 0.27 -2.42 16 22 C -0.05 -1.32 5.71 -11.54 -0.07 -1.39 16 23 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 24 C -0.06 -1.48 4.10 -19.87 -0.08 -1.56 16 25 C -0.12 -2.67 7.33 22.27 0.16 -2.50 16 26 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 27 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 28 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 29 C -0.12 -2.89 9.74 22.27 0.22 -2.68 16 30 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 3.88 8.09 -2.38 -0.02 3.86 16 34 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.36 13.95 3.31 -74.05 -0.24 13.70 16 36 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.09 2.93 6.49 -2.38 -0.02 2.92 16 38 H 0.10 3.66 8.09 -2.39 -0.02 3.64 16 39 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.14 2.53 6.17 -2.39 -0.01 2.52 16 41 H 0.12 2.41 5.95 -2.91 -0.02 2.40 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 45 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -68.67 375.53 2.62 -66.05 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: 0.60 Total: 41.62 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.35 Total: 10.06 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -2.73 Total: -77.39 kcal Atomic # 8 Polarization: -75.29 SS G_CDS: -2.28 Total: -77.57 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.67 Total: 37.24 kcal Total: -68.67 2.62 -66.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336496877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.629 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds