Wall clock time and date at job start Wed Apr 1 2020 03:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42104 * 108.57893 * 2 1 4 4 O 1.42103 * 108.57980 * 228.97353 * 2 1 3 5 5 C 1.81397 * 101.92147 * 114.48524 * 2 1 3 6 6 C 1.53008 * 109.47191 * 185.00173 * 5 2 1 7 7 C 1.52995 * 109.47173 * 180.02562 * 6 5 2 8 8 C 1.53007 * 109.46931 * 300.00151 * 7 6 5 9 9 C 1.50703 * 109.46937 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00100 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00112 * 179.97438 * 9 8 7 12 12 C 1.47425 * 125.64271 * 0.05219 * 11 9 8 13 13 C 1.54918 * 104.82827 * 204.07868 * 12 11 9 14 14 C 1.55157 * 101.58155 * 322.99497 * 13 12 11 15 15 O 1.42899 * 110.71725 * 277.13205 * 14 13 12 16 16 C 1.50702 * 110.71903 * 153.86325 * 14 13 12 17 17 H 1.08003 * 119.99947 * 241.45505 * 16 14 13 18 18 C 1.37875 * 119.99881 * 61.45034 * 16 14 13 19 19 N 1.31516 * 120.00466 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 120.00019 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47126 * 59.99925 * 20 18 16 22 22 H 1.48494 * 109.47253 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46787 * 300.00095 * 20 18 16 24 24 C 1.47015 * 125.64845 * 179.97438 * 11 9 8 25 25 C 1.52999 * 109.47228 * 59.99869 * 8 7 6 26 26 C 1.52995 * 109.47272 * 299.99922 * 25 8 7 27 27 H 1.08998 * 109.47618 * 305.51366 * 1 2 3 28 28 H 1.09003 * 109.47505 * 65.51595 * 1 2 3 29 29 H 1.09005 * 109.47367 * 185.51379 * 1 2 3 30 30 H 1.08994 * 109.47320 * 65.00336 * 5 2 1 31 31 H 1.08994 * 109.46855 * 59.99878 * 6 5 2 32 32 H 1.09000 * 109.46734 * 300.00459 * 6 5 2 33 33 H 1.09000 * 109.47382 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47290 * 59.99618 * 7 6 5 35 35 H 1.09003 * 109.47064 * 299.99568 * 8 7 6 36 36 H 1.08999 * 110.36633 * 85.25141 * 12 11 9 37 37 H 1.08996 * 110.37033 * 322.91522 * 12 11 9 38 38 H 1.09001 * 111.00522 * 204.91555 * 13 12 11 39 39 H 1.09000 * 110.99891 * 81.06585 * 13 12 11 40 40 H 0.96697 * 114.00297 * 298.54779 * 15 14 13 41 41 H 0.96994 * 120.00520 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88350 * 59.56990 * 24 11 9 43 43 H 1.08998 * 109.88602 * 298.40656 * 24 11 9 44 44 H 1.09002 * 109.46609 * 60.00437 * 25 8 7 45 45 H 1.09000 * 109.46647 * 179.97438 * 25 8 7 46 46 H 1.09003 * 109.46894 * 300.00223 * 26 25 8 47 47 H 1.09000 * 109.47382 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1886 -0.7356 1.6152 6 6 3.7001 -0.7049 1.8514 7 6 4.0162 -1.3259 3.2134 8 6 3.3118 -0.5288 4.3132 9 6 3.6237 -1.1401 5.6549 10 8 4.3385 -2.1174 5.7246 11 7 3.1083 -0.6007 6.7774 12 6 2.2281 0.5804 6.8372 13 6 2.4228 1.1480 8.2655 14 6 2.5671 -0.1519 9.1003 15 8 1.2835 -0.6905 9.4231 16 6 3.3694 0.1035 10.3501 17 1 4.3018 -0.4179 10.5092 18 6 2.9132 1.0027 11.2904 19 7 1.7777 1.6373 11.0970 20 14 3.9081 1.3198 12.8394 21 1 5.2495 1.8379 12.4688 22 1 3.2061 2.3205 13.6825 23 1 4.0593 0.0525 13.5986 24 6 3.3295 -1.0938 8.1446 25 6 1.8005 -0.5594 4.0770 26 6 1.4844 0.0616 2.7150 27 1 -0.3634 0.5969 0.8365 28 1 -0.3634 0.4259 -0.9353 29 1 -0.3634 -1.0229 0.0987 30 1 1.8388 -1.7677 1.6344 31 1 4.0499 0.3272 1.8322 32 1 4.2017 -1.2732 1.0681 33 1 5.0929 -1.3037 3.3819 34 1 3.6663 -2.3581 3.2322 35 1 3.6617 0.5034 4.2945 36 1 1.1894 0.2876 6.6839 37 1 2.5297 1.3165 6.0921 38 1 1.5503 1.7201 8.5809 39 1 3.3274 1.7532 8.3253 40 1 0.7335 -0.1024 9.9585 41 1 1.4565 2.2696 11.7586 42 1 4.3941 -1.0756 8.3776 43 1 2.9445 -2.1091 8.2394 44 1 1.4508 -1.5916 4.0958 45 1 1.2988 0.0081 4.8608 46 1 1.8342 1.0938 2.6963 47 1 0.4077 0.0393 2.5465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412272175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:20 Heat of formation + Delta-G solvation = -193.639706 kcal Electronic energy + Delta-G solvation = -29480.242872 eV Core-core repulsion = 25367.628828 eV Total energy + Delta-G solvation = -4112.614044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47785 -39.49414 -38.43617 -37.92514 -36.99466 -36.12903 -34.21047 -32.82515 -32.11085 -31.14170 -30.04119 -29.96033 -27.18954 -25.18999 -23.75837 -23.52540 -21.65768 -21.16093 -20.16621 -19.69222 -19.15425 -18.07255 -17.80950 -17.16163 -16.96763 -16.90419 -16.72536 -16.49212 -16.05688 -15.77344 -15.21961 -14.92562 -14.81114 -14.65127 -14.08128 -13.93656 -13.89384 -13.81650 -13.52728 -13.41851 -13.25178 -13.19508 -13.09960 -13.08664 -12.99011 -12.97170 -12.63777 -12.46100 -12.43578 -12.29020 -12.13280 -11.97455 -11.89483 -11.54551 -11.27756 -11.21996 -11.07927 -10.70174 -10.54899 -10.13995 -9.60721 -8.25110 -6.38929 -0.87917 1.41746 1.43942 1.50470 1.62281 1.89256 2.04586 2.39367 2.75975 3.00411 3.10703 3.43371 3.46947 3.58259 3.84719 3.95977 4.00513 4.01930 4.14229 4.18337 4.23036 4.31654 4.32936 4.37483 4.42329 4.49881 4.58067 4.66594 4.72800 4.83979 4.89799 4.91829 4.94406 5.07996 5.12339 5.14647 5.19616 5.23663 5.28591 5.38525 5.47774 5.55135 5.76511 6.08689 6.60046 6.66906 7.15267 7.31184 7.40989 8.80390 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002386 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.860814 B =11731.238268 C =12180.969830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.419 3.581 3 O -0.979 6.979 4 O -0.989 6.989 5 C -0.563 4.563 6 C -0.108 4.108 7 C -0.086 4.086 8 C -0.098 4.098 9 C 0.519 3.481 10 O -0.596 6.596 11 N -0.609 5.609 12 C 0.104 3.896 13 C -0.127 4.127 14 C 0.237 3.763 15 O -0.591 6.591 16 C -0.566 4.566 17 H 0.047 0.953 18 C 0.040 3.960 19 N -0.902 5.902 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.279 1.279 24 C 0.128 3.872 25 C -0.111 4.111 26 C -0.110 4.110 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.380 0.620 41 H 0.272 0.728 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 1.172 -20.215 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.608 3.392 3 O -0.976 6.976 4 O -0.986 6.986 5 C -0.672 4.672 6 C -0.146 4.146 7 C -0.125 4.125 8 C -0.119 4.119 9 C 0.310 3.690 10 O -0.477 6.477 11 N -0.341 5.341 12 C -0.018 4.018 13 C -0.166 4.166 14 C 0.197 3.803 15 O -0.400 6.400 16 C -0.604 4.604 17 H 0.065 0.935 18 C -0.161 4.161 19 N -0.541 5.541 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.201 1.201 23 H -0.205 1.205 24 C 0.005 3.995 25 C -0.149 4.149 26 C -0.148 4.148 27 H 0.175 0.825 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.158 0.576 -21.223 22.106 hybrid contribution 0.252 0.035 2.325 2.339 sum -5.906 0.611 -18.898 19.809 Atomic orbital electron populations 1.30148 1.21492 1.14129 1.13616 1.07662 0.80271 0.74366 0.76916 1.93540 1.81033 1.36083 1.86943 1.93540 1.81314 1.67814 1.55939 1.30183 1.04533 1.13955 1.18578 1.21389 0.91807 1.03323 0.98126 1.21193 1.00119 0.99127 0.92098 1.21396 0.99624 1.01741 0.89148 1.21199 0.78623 0.83165 0.86046 1.90637 1.40307 1.29062 1.87725 1.48718 1.48819 1.30904 1.05661 1.22659 0.94105 0.86341 0.98670 1.23102 1.01878 0.98411 0.93229 1.19550 0.81400 0.88438 0.90934 1.86116 1.29593 1.49299 1.75010 1.21692 1.07579 1.25171 1.05934 0.93470 1.25524 0.95966 0.94306 1.00353 1.69722 1.20499 1.27328 1.36508 0.85666 0.78956 0.77806 0.79487 1.20057 1.20096 1.20497 1.21750 0.98756 0.97376 0.81635 1.21629 0.91861 1.02844 0.98609 1.21636 1.02206 0.99512 0.91417 0.82470 0.84367 0.82754 0.82147 0.89553 0.89693 0.91962 0.91635 0.86761 0.90000 0.88075 0.89978 0.92770 0.77039 0.91847 0.92872 0.94101 0.91211 0.89304 0.88721 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.84 10.01 113.37 1.14 -0.70 16 2 S 2.42 29.68 4.90 -56.49 -0.28 29.41 16 3 O -0.98 -19.59 18.06 -127.37 -2.30 -21.89 16 4 O -0.99 -20.68 18.10 -127.37 -2.31 -22.99 16 5 C -0.56 -5.91 2.62 30.60 0.08 -5.83 16 6 C -0.11 -1.71 5.20 30.60 0.16 -1.55 16 7 C -0.09 -1.85 4.49 30.59 0.14 -1.71 16 8 C -0.10 -2.21 1.87 -11.54 -0.02 -2.23 16 9 C 0.52 17.79 7.22 87.66 0.63 18.42 16 10 O -0.60 -25.31 16.31 -3.04 -0.05 -25.36 16 11 N -0.61 -22.17 3.32 -811.79 -2.70 -24.87 16 12 C 0.10 3.17 5.13 86.86 0.45 3.62 16 13 C -0.13 -5.10 5.47 31.99 0.17 -4.92 16 14 C 0.24 11.10 0.84 -10.35 -0.01 11.10 16 15 O -0.59 -28.62 13.07 -148.98 -1.95 -30.56 16 16 C -0.57 -29.50 8.22 25.60 0.21 -29.29 16 17 H 0.05 2.53 7.57 -2.91 -0.02 2.51 16 18 C 0.04 2.03 5.28 84.65 0.45 2.47 16 19 N -0.90 -44.44 10.69 21.45 0.23 -44.21 16 20 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.13 5.75 6.22 86.73 0.54 6.29 16 25 C -0.11 -1.78 5.01 30.59 0.15 -1.63 16 26 C -0.11 -0.98 4.91 30.59 0.15 -0.83 16 27 H 0.16 -0.24 6.78 -2.39 -0.02 -0.25 16 28 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 34 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.11 2.22 7.85 -2.39 -0.02 2.20 16 36 H 0.08 2.27 7.07 -2.39 -0.02 2.26 16 37 H 0.10 2.34 7.36 -2.39 -0.02 2.32 16 38 H 0.08 3.38 7.54 -2.39 -0.02 3.36 16 39 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 40 H 0.38 18.30 7.49 -74.06 -0.55 17.74 16 41 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 42 H 0.05 2.53 7.66 -2.39 -0.02 2.51 16 43 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 1.42 4.99 -2.39 -0.01 1.41 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.12 0.16 6.39 -2.39 -0.02 0.15 16 Total: -1.00 -75.83 376.11 -2.66 -78.49 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.43 Total: 26.01 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.23 Total: -6.80 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.47 Total: -69.07 kcal Atomic # 8 Polarization: -94.20 SS G_CDS: -6.60 Total: -100.80 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 29.68 SS G_CDS: -0.28 Total: 29.41 kcal Total: -75.83 -2.66 -78.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412272175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.154 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds