Wall clock time and date at job start Wed Apr 1 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00087 * 2 1 4 4 O 1.20823 * 119.99769 * 0.02562 * 3 2 1 5 5 C 1.50691 * 119.99916 * 179.97438 * 3 2 1 6 6 H 1.09006 * 110.67263 * 61.78623 * 5 3 2 7 7 C 1.54888 * 110.75981 * 298.54948 * 5 3 2 8 8 C 1.54268 * 104.19697 * 203.55711 * 7 5 3 9 9 C 1.53866 * 106.59764 * 23.61071 * 8 7 5 10 10 H 1.09005 * 110.03178 * 240.66400 * 9 8 7 11 11 S 1.81403 * 110.03532 * 119.28469 * 9 8 7 12 12 O 1.42102 * 110.54012 * 310.46528 * 11 9 8 13 13 O 1.42094 * 110.54549 * 173.71545 * 11 9 8 14 14 N 1.65600 * 104.44979 * 62.09009 * 11 9 8 15 15 C 1.46916 * 120.63271 * 89.99922 * 14 11 9 16 16 C 1.53194 * 108.78025 * 233.61236 * 15 14 11 17 17 C 1.53037 * 109.30842 * 305.36293 * 16 15 14 18 18 C 1.53038 * 109.54012 * 61.36703 * 17 16 15 19 19 H 1.09004 * 109.49877 * 58.61462 * 18 17 16 20 20 C 1.50701 * 109.50299 * 178.67945 * 18 17 16 21 21 H 1.08002 * 119.99761 * 119.99395 * 20 18 17 22 22 C 1.37871 * 119.99694 * 300.27958 * 20 18 17 23 23 N 1.31523 * 119.99908 * 179.72112 * 22 20 18 24 24 Si 1.86800 * 120.00405 * 359.71709 * 22 20 18 25 25 H 1.48500 * 109.47210 * 90.00069 * 24 22 20 26 26 H 1.48504 * 109.47424 * 210.00300 * 24 22 20 27 27 H 1.48502 * 109.46888 * 330.00390 * 24 22 20 28 28 C 1.46929 * 120.62697 * 270.00443 * 14 11 9 29 29 C 1.54267 * 106.64513 * 359.97205 * 9 8 7 30 30 H 1.09001 * 109.47315 * 59.99757 * 1 2 3 31 31 H 1.08998 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46770 * 300.00163 * 1 2 3 33 33 H 1.09005 * 110.48897 * 84.87658 * 7 5 3 34 34 H 1.08994 * 110.60016 * 322.29141 * 7 5 3 35 35 H 1.09000 * 110.02952 * 264.32333 * 8 7 5 36 36 H 1.09004 * 110.07073 * 142.91393 * 8 7 5 37 37 H 1.09004 * 109.58712 * 113.81863 * 15 14 11 38 38 H 1.09001 * 109.58943 * 353.40147 * 15 14 11 39 39 H 1.09002 * 109.49449 * 185.41543 * 16 15 14 40 40 H 1.09001 * 109.49826 * 65.31580 * 16 15 14 41 41 H 1.08999 * 109.46351 * 301.34520 * 17 16 15 42 42 H 1.09006 * 109.44993 * 181.37616 * 17 16 15 43 43 H 0.96995 * 120.00181 * 179.97438 * 23 22 20 44 44 H 1.08993 * 109.59195 * 6.60477 * 28 14 11 45 45 H 1.08999 * 109.58544 * 246.17060 * 28 14 11 46 46 H 1.09001 * 110.48369 * 95.08642 * 29 9 8 47 47 H 1.08995 * 110.49234 * 217.73744 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9762 0.8133 -0.8979 7 6 4.1502 0.6126 1.2732 8 6 5.5335 1.2741 1.4432 9 6 5.4653 2.6285 0.7162 10 1 6.2039 2.6599 -0.0848 11 16 5.7641 3.9793 1.8896 12 8 4.9462 3.8289 3.0418 13 8 5.8472 5.2231 1.2075 14 7 7.3021 3.7134 2.4429 15 6 8.4577 4.3056 1.7557 16 6 9.4545 3.1923 1.4181 17 6 9.8075 2.4251 2.6944 18 6 8.5439 1.7833 3.2720 19 1 8.1051 1.1138 2.5321 20 6 8.8979 1.0013 4.5106 21 1 8.4484 1.2584 5.4584 22 6 9.8001 -0.0385 4.4349 23 7 10.1132 -0.7175 5.5170 24 14 10.5776 -0.4832 2.7957 25 1 11.8326 0.2904 2.6170 26 1 10.8839 -1.9360 2.7709 27 1 9.6345 -0.1573 1.6959 28 6 7.5368 2.8807 3.6305 29 6 4.0435 2.7436 0.1288 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.2567 -0.4626 1.1292 34 1 3.5194 0.8201 2.1374 35 1 6.3045 0.6478 0.9944 36 1 5.7469 1.4284 2.5009 37 1 8.9346 5.0378 2.4073 38 1 8.1275 4.7911 0.8374 39 1 10.3586 3.6296 0.9946 40 1 9.0068 2.5099 0.6955 41 1 10.2323 3.1127 3.4257 42 1 10.5353 1.6478 2.4611 43 1 10.7476 -1.4493 5.4637 44 1 6.5990 2.4259 3.9491 45 1 7.9387 3.4966 4.4350 46 1 3.3943 3.2975 0.8069 47 1 4.0726 3.2229 -0.8497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424346341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:31 Heat of formation + Delta-G solvation = -185.981658 kcal Electronic energy + Delta-G solvation = -30326.074368 eV Core-core repulsion = 26213.792402 eV Total energy + Delta-G solvation = -4112.281966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74352 -39.55993 -38.99997 -38.25429 -37.45030 -37.08377 -35.12285 -33.15421 -32.18469 -31.29208 -30.02008 -28.39687 -26.99939 -25.54487 -24.01158 -23.07144 -22.16634 -21.36766 -20.92714 -19.76513 -19.20012 -18.74450 -18.36927 -18.06623 -17.65381 -17.35315 -16.83906 -16.62332 -16.42910 -15.48188 -15.34786 -14.99756 -14.83735 -14.75846 -14.63633 -14.32647 -14.28172 -14.13777 -13.81768 -13.50808 -13.34985 -13.24649 -13.17527 -13.01187 -12.78086 -12.70956 -12.62135 -12.35391 -12.31652 -12.26742 -12.01361 -11.91277 -11.82037 -11.73963 -11.52825 -11.40556 -11.35802 -11.00212 -10.84074 -10.58453 -9.76899 -8.21737 -6.26668 -0.80389 1.06024 1.39135 1.42852 1.54758 1.55711 1.70447 2.40210 2.77828 2.92524 3.11291 3.14344 3.31136 3.71632 3.76914 3.89727 3.98599 4.12384 4.16661 4.23028 4.25405 4.27247 4.30443 4.33103 4.42825 4.44308 4.49006 4.65852 4.69193 4.70010 4.79142 4.87709 4.90122 5.00933 5.04559 5.06632 5.15538 5.17000 5.25902 5.31037 5.32482 5.49905 5.60316 5.76756 5.86229 6.37144 6.62517 6.81409 7.38892 8.94994 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003966 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.379106 B = 7057.894200 C = 8383.341871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.539 6.539 5 C -0.074 4.074 6 H 0.160 0.840 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.574 4.574 10 H 0.183 0.817 11 S 2.602 3.398 12 O -0.991 6.991 13 O -0.983 6.983 14 N -0.997 5.997 15 C 0.119 3.881 16 C -0.131 4.131 17 C -0.124 4.124 18 C 0.006 3.994 19 H 0.049 0.951 20 C -0.518 4.518 21 H 0.031 0.969 22 C 0.011 3.989 23 N -0.954 5.954 24 Si 0.950 3.050 25 H -0.272 1.272 26 H -0.308 1.308 27 H -0.226 1.226 28 C 0.146 3.854 29 C -0.095 4.095 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 2.237 -18.588 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.429 6.429 5 C -0.093 4.093 6 H 0.177 0.823 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.687 4.687 10 H 0.201 0.799 11 S 2.700 3.300 12 O -0.981 6.981 13 O -0.973 6.973 14 N -0.834 5.834 15 C -0.006 4.006 16 C -0.170 4.170 17 C -0.162 4.162 18 C -0.014 4.014 19 H 0.067 0.933 20 C -0.557 4.557 21 H 0.049 0.951 22 C -0.186 4.186 23 N -0.594 5.594 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.237 1.237 27 H -0.149 1.149 28 C 0.021 3.979 29 C -0.134 4.134 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.029 3.173 -18.221 22.063 hybrid contribution 0.516 -0.762 0.264 0.957 sum -11.513 2.411 -17.957 21.467 Atomic orbital electron populations 1.23571 0.74899 1.05778 1.02492 1.86515 1.24887 1.32508 1.83440 1.23973 0.92464 0.81246 0.71019 1.90671 1.67976 1.37466 1.46786 1.22109 0.85805 0.97494 1.03919 0.82270 1.22397 0.95032 1.02161 0.95412 1.22042 0.99688 0.92750 1.00111 1.31038 1.07105 1.14558 1.15981 0.79923 1.05196 0.72812 0.76411 0.75560 1.93540 1.68382 1.87776 1.48412 1.93520 1.85928 1.40874 1.76982 1.57581 1.22845 1.64029 1.38944 1.21596 0.86118 0.95296 0.97569 1.22000 0.99899 0.97809 0.97293 1.21873 0.98311 0.98700 0.97309 1.19453 0.93280 0.93321 0.95346 0.93327 1.21280 1.24734 1.14658 0.94982 0.95104 1.25894 0.96864 0.95756 1.00041 1.70075 1.35728 1.22667 1.30965 0.85831 0.79921 0.75246 0.81297 1.19873 1.23675 1.14921 1.21270 0.99651 0.91518 0.85422 1.22167 0.90698 0.96732 1.03797 0.91575 0.84980 0.92433 0.87080 0.91892 0.86941 0.91737 0.91085 0.87498 0.88954 0.90198 0.93123 0.94340 0.92787 0.90613 0.92981 0.92044 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.63 10.55 -51.46 -0.54 -7.18 16 3 C 0.47 10.05 7.26 71.23 0.52 10.57 16 4 O -0.54 -14.92 15.55 21.97 0.34 -14.58 16 5 C -0.07 -1.24 3.39 -10.22 -0.03 -1.28 16 6 H 0.16 1.53 8.14 -2.38 -0.02 1.51 16 7 C -0.11 -2.14 6.25 31.67 0.20 -1.94 16 8 C -0.11 -2.30 5.94 31.32 0.19 -2.11 16 9 C -0.57 -11.37 3.63 31.32 0.11 -11.25 16 10 H 0.18 2.18 8.14 -2.38 -0.02 2.16 16 11 S 2.60 76.51 4.52 -56.49 -0.26 76.26 16 12 O -0.99 -37.00 16.38 -127.65 -2.09 -39.09 16 13 O -0.98 -31.73 16.72 -127.65 -2.13 -33.86 16 14 N -1.00 -29.90 3.18 -513.07 -1.63 -31.53 16 15 C 0.12 2.96 6.31 86.37 0.55 3.50 16 16 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 17 C -0.12 -4.43 4.65 30.62 0.14 -4.28 16 18 C 0.01 0.25 1.84 -11.46 -0.02 0.23 16 19 H 0.05 1.81 6.69 -2.38 -0.02 1.80 16 20 C -0.52 -27.38 9.15 25.60 0.23 -27.15 16 21 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 22 C 0.01 0.61 5.45 84.65 0.46 1.07 16 23 N -0.95 -57.67 13.96 21.45 0.30 -57.38 16 24 Si 0.95 40.97 24.38 68.60 1.67 42.64 16 25 H -0.27 -11.35 6.85 99.48 0.68 -10.67 16 26 H -0.31 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 28 C 0.15 5.42 4.80 86.36 0.41 5.83 16 29 C -0.09 -1.85 5.43 31.70 0.17 -1.67 16 30 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.75 5.12 -2.38 -0.01 1.73 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.11 2.14 7.10 -2.39 -0.02 2.13 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.45 3.23 -2.38 -0.01 1.44 16 43 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.08 2.89 5.81 -2.39 -0.01 2.88 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 1.50 7.21 -2.39 -0.02 1.49 16 47 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.19 371.83 0.86 -76.33 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.89 Total: 18.39 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.31 Total: -30.00 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -1.33 Total: -88.91 kcal Atomic # 8 Polarization: -90.28 SS G_CDS: -4.43 Total: -94.70 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.67 Total: 42.64 kcal Atomic # 16 Polarization: 76.51 SS G_CDS: -0.26 Total: 76.26 kcal Total: -77.19 0.86 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424346341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.652 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds