Wall clock time and date at job start Wed Apr 1 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00253 * 2 1 4 4 O 1.20833 * 119.99766 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00284 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47129 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.46776 * 170.27209 * 6 5 3 8 8 C 1.37097 * 120.00010 * 288.53084 * 7 6 5 9 9 H 1.07998 * 120.00144 * 302.45420 * 8 7 6 10 10 C 1.38951 * 119.99856 * 122.45057 * 8 7 6 11 11 N 1.31411 * 120.00115 * 116.24553 * 10 8 7 12 12 Si 1.86804 * 120.00143 * 296.24490 * 10 8 7 13 13 H 1.48496 * 109.46846 * 60.00083 * 12 10 8 14 14 H 1.48502 * 109.47150 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47034 * 300.00037 * 12 10 8 16 16 C 1.34781 * 120.00028 * 108.54094 * 7 6 5 17 17 O 1.21294 * 119.99629 * 174.07327 * 16 7 6 18 18 C 1.50700 * 119.99860 * 354.06453 * 16 7 6 19 19 H 1.08998 * 109.47134 * 69.48168 * 18 16 7 20 20 C 1.53001 * 109.47080 * 309.48092 * 18 16 7 21 21 C 1.50702 * 109.46893 * 189.48279 * 18 16 7 22 22 C 1.33990 * 124.92473 * 240.00124 * 21 18 16 23 23 C 1.46777 * 106.18977 * 179.97438 * 22 21 18 24 24 C 1.39409 * 134.37229 * 180.02562 * 23 22 21 25 25 C 1.36736 * 119.71719 * 179.97438 * 24 23 22 26 26 C 1.38748 * 120.41476 * 359.97438 * 25 24 23 27 27 C 1.37844 * 120.68728 * 0.02562 * 26 25 24 28 28 C 1.38946 * 119.81792 * 359.97438 * 27 26 25 29 29 O 1.34446 * 124.92171 * 59.69443 * 21 18 16 30 30 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.00098 * 1 2 3 32 32 H 1.09000 * 109.47729 * 59.99685 * 1 2 3 33 33 H 1.09001 * 109.46745 * 60.00563 * 5 3 2 34 34 H 1.08996 * 109.47025 * 300.00367 * 5 3 2 35 35 H 1.09001 * 109.47140 * 50.26898 * 6 5 3 36 36 H 1.09003 * 109.47058 * 290.27125 * 6 5 3 37 37 H 0.97001 * 120.00392 * 184.86120 * 11 10 8 38 38 H 1.08997 * 109.46999 * 325.30753 * 20 18 16 39 39 H 1.08995 * 109.47197 * 85.31074 * 20 18 16 40 40 H 1.09003 * 109.46699 * 205.30705 * 20 18 16 41 41 H 1.08005 * 126.90717 * 359.96348 * 22 21 18 42 42 H 1.08003 * 120.14297 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.79593 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.65401 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.09086 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4442 2.8241 0.2330 8 6 5.9559 2.5394 1.4726 9 1 5.6181 3.0927 2.3364 10 6 6.9091 1.5388 1.6176 11 7 8.1193 1.8393 2.0324 12 14 6.4703 -0.2335 1.2230 13 1 6.0562 -0.3360 -0.1994 14 1 7.6527 -1.1005 1.4586 15 1 5.3529 -0.6731 2.0968 16 6 6.2696 3.1797 -0.7714 17 8 7.4503 3.3523 -0.5537 18 6 5.7255 3.3626 -2.1648 19 1 5.0940 4.2505 -2.1946 20 6 4.8990 2.1356 -2.5548 21 6 6.8688 3.5266 -3.1329 22 6 7.0703 4.6015 -3.9070 23 6 8.2884 4.3275 -4.6787 24 6 9.0137 5.0321 -5.6384 25 6 10.1409 4.4776 -6.1783 26 6 10.5665 3.2196 -5.7766 27 6 9.8624 2.5081 -4.8290 28 6 8.7142 3.0533 -4.2677 29 8 7.8377 2.6179 -3.3407 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9556 0.7809 -0.8909 34 1 3.9564 0.7805 0.8891 35 1 3.4736 3.2762 0.7911 36 1 3.7613 3.1920 -0.9635 37 1 8.8046 1.1537 2.0665 38 1 5.3442 1.2430 -2.1151 39 1 3.8797 2.2522 -2.1868 40 1 4.8844 2.0374 -3.6403 41 1 6.4592 5.4908 -3.9539 42 1 8.6866 6.0118 -5.9541 43 1 10.7039 5.0225 -6.9215 44 1 11.4589 2.7935 -6.2108 45 1 10.2022 1.5294 -4.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438603881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:36 Heat of formation + Delta-G solvation = -57.740957 kcal Electronic energy + Delta-G solvation = -30750.987758 eV Core-core repulsion = 26508.822775 eV Total energy + Delta-G solvation = -4242.164983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20420 -40.33880 -38.96743 -37.64954 -36.43578 -34.88454 -33.97762 -32.62407 -31.89008 -30.61957 -30.22965 -28.50099 -27.60624 -25.41572 -24.36737 -23.36233 -22.63911 -21.58004 -20.94845 -20.52764 -19.24430 -17.67020 -17.13451 -16.94615 -16.60570 -16.46533 -16.19966 -15.78259 -15.67585 -15.18784 -14.72988 -14.45098 -14.30602 -14.01038 -13.71849 -13.46810 -13.33950 -13.06589 -12.84970 -12.74274 -12.35131 -12.30846 -12.22378 -12.11393 -11.85622 -11.82190 -11.60106 -11.36038 -11.17452 -11.00876 -10.73932 -10.72351 -10.63378 -10.39428 -10.26186 -10.04142 -9.88860 -8.66156 -8.43067 -8.25894 -7.89103 -7.40981 -6.72424 -3.88717 1.09350 1.53501 2.39992 2.60864 2.85528 3.00401 3.13690 3.27055 3.31822 3.81650 3.87188 4.18697 4.36502 4.51746 4.82344 4.84744 5.00752 5.04074 5.08878 5.15360 5.20321 5.26889 5.28219 5.34415 5.38567 5.41849 5.46043 5.54831 5.63835 5.71111 5.81771 5.86309 5.96290 5.98688 6.02015 6.26115 6.31453 6.39091 6.43316 6.48545 6.53525 6.63880 6.66271 6.84777 7.46098 7.50215 7.91592 8.26844 8.82975 9.08015 9.32471 10.00721 10.33123 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003587 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.700594 B = 7804.185853 C = 9028.921328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.143 4.143 6 C 0.101 3.899 7 N -0.443 5.443 8 C -0.442 4.442 9 H 0.084 0.916 10 C 0.157 3.843 11 N -0.724 5.724 12 Si 0.791 3.209 13 H -0.263 1.263 14 H -0.287 1.287 15 H -0.264 1.264 16 C 0.473 3.527 17 O -0.519 6.519 18 C -0.047 4.047 19 H 0.120 0.880 20 C -0.159 4.159 21 C 0.095 3.905 22 C -0.225 4.225 23 C -0.122 4.122 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.104 4.104 27 C -0.104 4.104 28 C 0.053 3.947 29 O -0.175 6.175 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.276 0.724 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -0.837 -13.070 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.181 4.181 6 C -0.022 4.022 7 N -0.166 5.166 8 C -0.562 4.562 9 H 0.102 0.898 10 C -0.069 4.069 11 N -0.345 5.345 12 Si 0.612 3.388 13 H -0.188 1.188 14 H -0.213 1.213 15 H -0.189 1.189 16 C 0.260 3.740 17 O -0.395 6.395 18 C -0.069 4.069 19 H 0.138 0.862 20 C -0.216 4.216 21 C 0.046 3.954 22 C -0.244 4.244 23 C -0.123 4.123 24 C -0.094 4.094 25 C -0.160 4.160 26 C -0.122 4.122 27 C -0.123 4.123 28 C 0.006 3.994 29 O -0.075 6.075 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.358 -0.675 -12.649 13.753 hybrid contribution -0.499 -1.099 -0.133 1.215 sum -5.857 -1.774 -12.782 14.171 Atomic orbital electron populations 1.23209 0.77069 1.03296 1.02379 1.86562 1.22957 1.34166 1.84291 1.24108 0.92319 0.80999 0.71540 1.90629 1.67364 1.36205 1.45735 1.22297 0.86012 1.03096 1.06721 1.21863 0.86758 0.91877 1.01745 1.43106 1.02517 1.61165 1.09796 1.17801 1.29797 1.23671 0.84948 0.89843 1.25432 0.92476 0.98543 0.90449 1.70600 1.00485 1.34796 1.28639 0.88151 0.80197 0.89936 0.80565 1.18797 1.21285 1.18875 1.20238 0.87937 0.80946 0.84879 1.90691 1.15575 1.50679 1.82587 1.20267 0.92073 1.01769 0.92805 0.86243 1.22334 1.00125 0.97169 1.01965 1.21736 0.89506 0.88060 0.96092 1.22075 0.99572 1.00407 1.02321 1.19926 0.97152 0.95270 0.99973 1.20222 0.94641 0.99282 0.95302 1.20683 0.97445 0.96178 1.01679 1.20822 0.99510 0.94845 0.97067 1.19950 0.92643 1.01239 0.98421 1.19672 0.93421 0.94229 0.92125 1.84028 1.31597 1.42549 1.49295 0.88486 0.92003 0.92082 0.87779 0.86513 0.90744 0.90825 0.91375 0.91159 0.90091 0.91890 0.82667 0.85862 0.85772 0.85187 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.24 10.56 -39.24 -0.41 -5.66 16 3 C 0.47 7.50 7.95 36.01 0.29 7.79 16 4 O -0.51 -8.87 15.57 -18.76 -0.29 -9.16 16 5 C -0.14 -2.47 4.63 -27.88 -0.13 -2.60 16 6 C 0.10 1.86 4.25 -4.04 -0.02 1.84 16 7 N -0.44 -10.24 2.40 -114.81 -0.28 -10.52 16 8 C -0.44 -11.77 8.28 -14.93 -0.12 -11.90 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 10 C 0.16 4.22 4.37 -17.47 -0.08 4.14 16 11 N -0.72 -20.51 13.95 55.50 0.77 -19.74 16 12 Si 0.79 18.68 26.52 -169.99 -4.51 14.17 16 13 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 16 C 0.47 11.16 6.73 -10.98 -0.07 11.09 16 17 O -0.52 -14.80 15.32 3.95 0.06 -14.74 16 18 C -0.05 -0.85 2.35 -92.92 -0.22 -1.07 16 19 H 0.12 1.77 7.74 -51.93 -0.40 1.37 16 20 C -0.16 -2.44 7.40 37.16 0.28 -2.17 16 21 C 0.09 1.79 4.92 -35.80 -0.18 1.61 16 22 C -0.22 -3.74 10.97 -37.63 -0.41 -4.15 16 23 C -0.12 -2.04 6.40 -105.16 -0.67 -2.71 16 24 C -0.08 -1.03 10.05 -39.69 -0.40 -1.43 16 25 C -0.14 -1.67 9.98 -39.94 -0.40 -2.07 16 26 C -0.10 -1.27 10.01 -39.54 -0.40 -1.67 16 27 C -0.10 -1.56 10.07 -39.46 -0.40 -1.96 16 28 C 0.05 0.97 7.42 -38.47 -0.29 0.69 16 29 O -0.17 -3.61 10.42 2.32 0.02 -3.59 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.10 1.69 5.46 -51.93 -0.28 1.41 16 34 H 0.12 2.25 5.30 -51.93 -0.28 1.97 16 35 H 0.07 1.41 7.78 -51.93 -0.40 1.01 16 36 H 0.07 1.17 4.43 -51.93 -0.23 0.94 16 37 H 0.28 7.24 8.32 -40.82 -0.34 6.91 16 38 H 0.07 1.22 6.88 -51.93 -0.36 0.86 16 39 H 0.08 1.09 4.67 -51.93 -0.24 0.85 16 40 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -34.06 373.62 -6.69 -40.76 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.54 Total: 5.97 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.15 Total: -3.13 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.50 Total: -30.26 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.62 Total: -33.15 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.51 Total: 14.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.06 -6.69 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438603881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.982 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds