Wall clock time and date at job start Wed Apr 1 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00253 * 2 1 4 4 O 1.20833 * 119.99766 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00284 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47129 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.46776 * 170.27209 * 6 5 3 8 8 C 1.37097 * 120.00010 * 288.53084 * 7 6 5 9 9 H 1.07998 * 120.00144 * 302.45420 * 8 7 6 10 10 C 1.38951 * 119.99856 * 122.45057 * 8 7 6 11 11 N 1.31411 * 120.00115 * 116.24553 * 10 8 7 12 12 Si 1.86804 * 120.00143 * 296.24490 * 10 8 7 13 13 H 1.48496 * 109.46846 * 60.00083 * 12 10 8 14 14 H 1.48502 * 109.47150 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47034 * 300.00037 * 12 10 8 16 16 C 1.34781 * 120.00028 * 108.54094 * 7 6 5 17 17 O 1.21294 * 119.99629 * 174.07327 * 16 7 6 18 18 C 1.50700 * 119.99860 * 354.06453 * 16 7 6 19 19 H 1.08998 * 109.47134 * 69.48168 * 18 16 7 20 20 C 1.53001 * 109.47080 * 309.48092 * 18 16 7 21 21 C 1.50702 * 109.46893 * 189.48279 * 18 16 7 22 22 C 1.33990 * 124.92473 * 240.00124 * 21 18 16 23 23 C 1.46777 * 106.18977 * 179.97438 * 22 21 18 24 24 C 1.39409 * 134.37229 * 180.02562 * 23 22 21 25 25 C 1.36736 * 119.71719 * 179.97438 * 24 23 22 26 26 C 1.38748 * 120.41476 * 359.97438 * 25 24 23 27 27 C 1.37844 * 120.68728 * 0.02562 * 26 25 24 28 28 C 1.38946 * 119.81792 * 359.97438 * 27 26 25 29 29 O 1.34446 * 124.92171 * 59.69443 * 21 18 16 30 30 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.00098 * 1 2 3 32 32 H 1.09000 * 109.47729 * 59.99685 * 1 2 3 33 33 H 1.09001 * 109.46745 * 60.00563 * 5 3 2 34 34 H 1.08996 * 109.47025 * 300.00367 * 5 3 2 35 35 H 1.09001 * 109.47140 * 50.26898 * 6 5 3 36 36 H 1.09003 * 109.47058 * 290.27125 * 6 5 3 37 37 H 0.97001 * 120.00392 * 184.86120 * 11 10 8 38 38 H 1.08997 * 109.46999 * 325.30753 * 20 18 16 39 39 H 1.08995 * 109.47197 * 85.31074 * 20 18 16 40 40 H 1.09003 * 109.46699 * 205.30705 * 20 18 16 41 41 H 1.08005 * 126.90717 * 359.96348 * 22 21 18 42 42 H 1.08003 * 120.14297 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.79593 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.65401 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.09086 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4442 2.8241 0.2330 8 6 5.9559 2.5394 1.4726 9 1 5.6181 3.0927 2.3364 10 6 6.9091 1.5388 1.6176 11 7 8.1193 1.8393 2.0324 12 14 6.4703 -0.2335 1.2230 13 1 6.0562 -0.3360 -0.1994 14 1 7.6527 -1.1005 1.4586 15 1 5.3529 -0.6731 2.0968 16 6 6.2696 3.1797 -0.7714 17 8 7.4503 3.3523 -0.5537 18 6 5.7255 3.3626 -2.1648 19 1 5.0940 4.2505 -2.1946 20 6 4.8990 2.1356 -2.5548 21 6 6.8688 3.5266 -3.1329 22 6 7.0703 4.6015 -3.9070 23 6 8.2884 4.3275 -4.6787 24 6 9.0137 5.0321 -5.6384 25 6 10.1409 4.4776 -6.1783 26 6 10.5665 3.2196 -5.7766 27 6 9.8624 2.5081 -4.8290 28 6 8.7142 3.0533 -4.2677 29 8 7.8377 2.6179 -3.3407 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9556 0.7809 -0.8909 34 1 3.9564 0.7805 0.8891 35 1 3.4736 3.2762 0.7911 36 1 3.7613 3.1920 -0.9635 37 1 8.8046 1.1537 2.0665 38 1 5.3442 1.2430 -2.1151 39 1 3.8797 2.2522 -2.1868 40 1 4.8844 2.0374 -3.6403 41 1 6.4592 5.4908 -3.9539 42 1 8.6866 6.0118 -5.9541 43 1 10.7039 5.0225 -6.9215 44 1 11.4589 2.7935 -6.2108 45 1 10.2022 1.5294 -4.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438603881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:35 Heat of formation + Delta-G solvation = -78.650505 kcal Electronic energy + Delta-G solvation = -30751.894464 eV Core-core repulsion = 26508.822775 eV Total energy + Delta-G solvation = -4243.071689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.44985 -41.59870 -40.61151 -38.76001 -37.67235 -36.63872 -35.54494 -34.37187 -33.19673 -32.17831 -31.30908 -29.68164 -28.59788 -27.24247 -25.70195 -24.76706 -23.83579 -22.85591 -22.26669 -21.80292 -20.87935 -19.10608 -18.58237 -18.29753 -17.91767 -17.66797 -17.49571 -17.11978 -17.01695 -16.59742 -16.48355 -16.02336 -15.77960 -15.29455 -15.04432 -14.78017 -14.63250 -14.48224 -14.18049 -14.00633 -13.94242 -13.65620 -13.56110 -13.37924 -13.19208 -13.04678 -12.86707 -12.78051 -12.71387 -12.49647 -12.26871 -12.03549 -11.85327 -11.81520 -11.72821 -11.50210 -11.06933 -10.66335 -10.17645 -9.55042 -9.33720 -9.07395 -8.78687 -5.94504 -0.02165 0.43717 1.13537 1.21523 1.32153 1.37297 1.38266 1.68717 1.81055 2.05944 2.23637 2.46586 2.80142 3.05803 3.33506 3.71343 3.77435 3.88287 3.96005 3.97420 4.03659 4.13431 4.17679 4.22381 4.32182 4.35515 4.38375 4.44227 4.46734 4.56234 4.66328 4.70736 4.74748 4.79098 4.87596 4.95672 4.98067 5.18260 5.29239 5.37032 5.37481 5.43674 5.51410 5.52489 5.83283 6.21814 6.28063 6.70997 6.89710 7.11785 7.39856 8.12071 8.32127 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003587 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.700594 B = 7804.185853 C = 9028.921328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.478 3.522 4 O -0.526 6.526 5 C -0.141 4.141 6 C 0.106 3.894 7 N -0.448 5.448 8 C -0.465 4.465 9 H 0.050 0.950 10 C 0.121 3.879 11 N -0.773 5.773 12 Si 0.852 3.148 13 H -0.252 1.252 14 H -0.291 1.291 15 H -0.242 1.242 16 C 0.462 3.538 17 O -0.581 6.581 18 C -0.037 4.037 19 H 0.154 0.846 20 C -0.152 4.152 21 C 0.055 3.945 22 C -0.213 4.213 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.135 4.135 26 C -0.090 4.090 27 C -0.131 4.131 28 C 0.013 3.987 29 O -0.212 6.212 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.278 0.722 38 H 0.046 0.954 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.185 0.815 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -1.071 -16.427 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.322 3.678 4 O -0.415 6.415 5 C -0.179 4.179 6 C -0.016 4.016 7 N -0.169 5.169 8 C -0.586 4.586 9 H 0.067 0.933 10 C -0.102 4.102 11 N -0.396 5.396 12 Si 0.672 3.328 13 H -0.176 1.176 14 H -0.218 1.218 15 H -0.166 1.166 16 C 0.251 3.749 17 O -0.462 6.462 18 C -0.058 4.058 19 H 0.171 0.829 20 C -0.208 4.208 21 C 0.008 3.992 22 C -0.231 4.231 23 C -0.149 4.149 24 C -0.097 4.097 25 C -0.152 4.152 26 C -0.107 4.107 27 C -0.150 4.150 28 C -0.034 4.034 29 O -0.114 6.114 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.202 0.798 42 H 0.170 0.830 43 H 0.184 0.816 44 H 0.186 0.814 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.833 -0.941 -16.006 17.429 hybrid contribution 0.018 -0.926 0.850 1.257 sum -6.815 -1.867 -15.157 16.723 Atomic orbital electron populations 1.23591 0.74543 1.05712 1.02839 1.86524 1.25336 1.32844 1.83739 1.23585 0.91557 0.81367 0.71299 1.90629 1.67533 1.36778 1.46571 1.22108 0.87551 1.01715 1.06550 1.21852 0.83287 0.93348 1.03162 1.43161 1.04421 1.60634 1.08730 1.17619 1.30827 1.24448 0.85665 0.93273 1.26051 0.91830 1.02091 0.90249 1.70652 1.01574 1.35931 1.31489 0.87218 0.80096 0.84174 0.81304 1.17645 1.21774 1.16553 1.21218 0.87301 0.79304 0.87098 1.90647 1.18365 1.53111 1.84103 1.20237 0.92597 1.04326 0.88626 0.82902 1.22309 1.00241 0.94853 1.03439 1.21960 0.90327 0.89129 0.97828 1.22513 0.99447 1.00210 1.00971 1.20277 0.97839 0.95338 1.01415 1.20672 0.94660 1.00236 0.94127 1.21228 0.96715 0.95886 1.01403 1.21352 0.99644 0.94678 0.95055 1.20332 0.92621 1.02219 0.99782 1.20314 0.94484 0.95789 0.92798 1.83944 1.32776 1.43983 1.50705 0.85185 0.92014 0.91215 0.86482 0.88302 0.91452 0.87603 0.91149 0.93506 0.87981 0.89545 0.79752 0.83018 0.81613 0.81445 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.37 -9.66 10.56 -51.36 -0.54 -10.20 16 3 C 0.48 14.40 7.95 71.24 0.57 14.97 16 4 O -0.53 -17.17 15.57 21.94 0.34 -16.83 16 5 C -0.14 -4.71 4.63 29.85 0.14 -4.57 16 6 C 0.11 3.87 4.25 86.38 0.37 4.23 16 7 N -0.45 -21.28 2.40 -635.53 -1.53 -22.81 16 8 C -0.46 -26.07 8.28 84.04 0.70 -25.37 16 9 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 10 C 0.12 6.83 4.37 84.93 0.37 7.20 16 11 N -0.77 -46.41 13.95 21.66 0.30 -46.11 16 12 Si 0.85 39.85 26.52 68.60 1.82 41.67 16 13 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.24 -10.37 7.11 99.48 0.71 -9.66 16 16 C 0.46 22.48 6.73 87.66 0.59 23.07 16 17 O -0.58 -35.11 15.32 -1.55 -0.02 -35.14 16 18 C -0.04 -1.30 2.35 -12.29 -0.03 -1.33 16 19 H 0.15 4.24 7.74 -2.39 -0.02 4.22 16 20 C -0.15 -4.43 7.40 71.98 0.53 -3.90 16 21 C 0.06 2.12 4.92 24.72 0.12 2.24 16 22 C -0.21 -6.93 10.97 23.54 0.26 -6.68 16 23 C -0.15 -4.83 6.40 -20.22 -0.13 -4.96 16 24 C -0.08 -1.91 10.05 22.20 0.22 -1.69 16 25 C -0.13 -2.66 9.98 22.04 0.22 -2.44 16 26 C -0.09 -1.94 10.01 22.30 0.22 -1.71 16 27 C -0.13 -3.92 10.07 22.35 0.23 -3.70 16 28 C 0.01 0.49 7.42 22.99 0.17 0.66 16 29 O -0.21 -9.19 10.42 -7.38 -0.08 -9.27 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 32 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.12 3.60 5.46 -2.39 -0.01 3.58 16 34 H 0.10 3.73 5.30 -2.39 -0.01 3.72 16 35 H 0.07 2.56 7.78 -2.39 -0.02 2.54 16 36 H 0.11 3.14 4.43 -2.39 -0.01 3.13 16 37 H 0.28 15.50 8.32 -92.71 -0.77 14.73 16 38 H 0.05 1.59 6.88 -2.39 -0.02 1.58 16 39 H 0.10 2.46 4.67 -2.39 -0.01 2.45 16 40 H 0.09 2.13 7.90 -2.39 -0.02 2.12 16 41 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -81.62 373.62 7.07 -74.55 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 1.03 Total: 26.45 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.74 Total: -2.31 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.23 Total: -68.92 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -0.30 Total: -71.44 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.82 Total: 41.67 kcal Total: -81.62 7.07 -74.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438603881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.098 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds