Wall clock time and date at job start Wed Apr 1 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99854 * 2 1 4 4 O 1.20826 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99783 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46736 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.46742 * 180.02562 * 6 5 3 8 8 C 1.37100 * 120.00111 * 93.83726 * 7 6 5 9 9 H 1.07993 * 120.00000 * 222.60991 * 8 7 6 10 10 C 1.38952 * 119.99671 * 42.60465 * 8 7 6 11 11 N 1.31407 * 120.00222 * 18.45079 * 10 8 7 12 12 Si 1.86801 * 119.99658 * 198.44979 * 10 8 7 13 13 H 1.48496 * 109.47428 * 90.00192 * 12 10 8 14 14 H 1.48501 * 109.47377 * 210.00109 * 12 10 8 15 15 H 1.48503 * 109.47419 * 330.00148 * 12 10 8 16 16 C 1.34773 * 120.00183 * 273.83369 * 7 6 5 17 17 O 1.21296 * 120.00035 * 4.58018 * 16 7 6 18 18 C 1.50695 * 120.00390 * 184.57966 * 16 7 6 19 19 H 1.08998 * 109.47004 * 321.42469 * 18 16 7 20 20 C 1.53006 * 109.47074 * 81.41866 * 18 16 7 21 21 C 1.50698 * 109.47686 * 201.41548 * 18 16 7 22 22 C 1.33998 * 124.92227 * 119.71430 * 21 18 16 23 23 C 1.46785 * 106.18416 * 179.90155 * 22 21 18 24 24 C 1.39402 * 134.36865 * 180.11643 * 23 22 21 25 25 C 1.36736 * 119.71781 * 180.26791 * 24 23 22 26 26 C 1.38740 * 120.41395 * 0.02562 * 25 24 23 27 27 C 1.37842 * 120.68940 * 359.97438 * 26 25 24 28 28 C 1.38944 * 119.81729 * 0.02562 * 27 26 25 29 29 O 1.34447 * 124.92388 * 300.03289 * 21 18 16 30 30 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47027 * 299.99911 * 1 2 3 32 32 H 1.09000 * 109.46975 * 60.00217 * 1 2 3 33 33 H 1.08993 * 109.46599 * 60.00799 * 5 3 2 34 34 H 1.08996 * 109.47245 * 300.00360 * 5 3 2 35 35 H 1.08998 * 109.46815 * 60.00527 * 6 5 3 36 36 H 1.08997 * 109.47114 * 300.00551 * 6 5 3 37 37 H 0.97004 * 119.99705 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47423 * 183.84618 * 20 18 16 39 39 H 1.09006 * 109.46964 * 303.84024 * 20 18 16 40 40 H 1.08998 * 109.47085 * 63.84101 * 20 18 16 41 41 H 1.07998 * 126.90474 * 0.03562 * 22 21 18 42 42 H 1.08005 * 120.14263 * 0.29500 * 24 23 22 43 43 H 1.08004 * 119.79332 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.65591 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.09286 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1435 2.9344 -1.1836 9 1 7.0410 2.3572 -1.3494 10 6 5.6781 3.7943 -2.1709 11 7 4.8282 4.7484 -1.8641 12 14 6.2607 3.5940 -3.9344 13 1 5.3475 2.6716 -4.6557 14 1 6.2617 4.9170 -4.6087 15 1 7.6361 3.0341 -3.9408 16 6 6.1402 2.7757 1.1655 17 8 5.5456 2.5901 2.2063 18 6 7.6361 2.9580 1.1746 19 1 8.0686 2.4554 0.3095 20 6 7.9683 4.4504 1.1161 21 6 8.2068 2.3656 2.4373 22 6 9.1028 1.3702 2.4808 23 6 9.3712 1.1232 3.9026 24 6 10.1919 0.2383 4.6003 25 6 10.2067 0.2621 5.9674 26 6 9.4103 1.1603 6.6629 27 6 8.5924 2.0427 5.9901 28 6 8.5624 2.0351 4.6010 29 8 7.8863 2.7551 3.6835 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.9563 0.7807 -0.8892 34 1 3.9558 0.7809 0.8907 35 1 3.6101 3.2359 0.8911 36 1 3.6106 3.2364 -0.8888 37 1 4.5036 5.3489 -2.5533 38 1 9.0488 4.5800 1.0538 39 1 7.4981 4.8932 0.2380 40 1 7.5947 4.9413 2.0147 41 1 9.5411 0.8549 1.6389 42 1 10.8137 -0.4628 4.0633 43 1 10.8424 -0.4226 6.5091 44 1 9.4313 1.1683 7.7427 45 1 7.9767 2.7382 6.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438603882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:39 Heat of formation + Delta-G solvation = -91.484665 kcal Electronic energy + Delta-G solvation = -30167.445776 eV Core-core repulsion = 25923.817556 eV Total energy + Delta-G solvation = -4243.628220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14428 -40.08105 -38.86403 -37.64200 -36.22051 -35.02747 -33.67150 -32.17296 -31.95056 -30.53533 -30.20326 -28.33327 -27.51425 -25.12775 -24.58071 -23.38913 -22.53642 -21.50264 -20.84402 -20.12845 -19.20701 -17.57883 -17.09500 -17.03772 -16.31016 -16.17447 -16.07673 -15.95913 -15.55396 -15.27009 -14.61063 -14.31910 -13.95719 -13.88757 -13.63344 -13.50632 -13.15149 -12.99552 -12.72196 -12.63008 -12.29210 -12.13007 -12.02769 -11.86276 -11.74370 -11.67757 -11.32134 -11.17223 -11.04182 -11.02230 -10.73893 -10.62159 -10.56364 -10.44911 -10.12453 -10.03442 -9.87794 -9.21938 -8.59968 -8.40243 -7.84924 -7.64389 -6.49516 -4.28997 1.10936 1.54490 2.64213 2.65634 3.01872 3.04659 3.08282 3.15653 3.16647 3.74438 3.87905 4.01410 4.46491 4.75397 4.81955 4.88205 5.01908 5.22316 5.27097 5.29257 5.31131 5.40326 5.44394 5.51784 5.61239 5.72078 5.75047 5.79644 5.86202 5.95607 6.01569 6.03238 6.25053 6.33674 6.39815 6.43804 6.45781 6.54220 6.67499 6.70367 6.78595 6.85632 6.90040 7.20720 7.32214 7.57099 7.78849 8.14783 8.20404 8.94052 9.30979 9.76082 10.52737 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.003492 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.124946 B = 8016.825125 C =10099.054288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.126 4.126 6 C 0.137 3.863 7 N -0.434 5.434 8 C -0.357 4.357 9 H 0.091 0.909 10 C 0.052 3.948 11 N -0.849 5.849 12 Si 0.912 3.088 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.481 3.519 17 O -0.587 6.587 18 C -0.023 4.023 19 H 0.123 0.877 20 C -0.132 4.132 21 C 0.092 3.908 22 C -0.232 4.232 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.143 4.143 26 C -0.106 4.106 27 C -0.104 4.104 28 C 0.050 3.950 29 O -0.168 6.168 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.273 0.727 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -7.598 5.917 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.165 4.165 6 C 0.013 3.987 7 N -0.153 5.153 8 C -0.484 4.484 9 H 0.108 0.892 10 C -0.156 4.156 11 N -0.483 5.483 12 Si 0.738 3.262 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.191 1.191 16 C 0.269 3.731 17 O -0.471 6.471 18 C -0.044 4.044 19 H 0.140 0.860 20 C -0.190 4.190 21 C 0.042 3.958 22 C -0.251 4.251 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.161 4.161 26 C -0.124 4.124 27 C -0.123 4.123 28 C 0.001 3.999 29 O -0.067 6.067 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.369 -6.985 6.387 10.425 hybrid contribution 0.034 -0.180 -1.120 1.135 sum 4.403 -7.165 5.266 9.923 Atomic orbital electron populations 1.23170 0.77348 1.03044 1.02337 1.86542 1.22765 1.34400 1.84631 1.24082 0.92399 0.80895 0.71694 1.90651 1.67282 1.36233 1.45126 1.21924 0.85874 1.03379 1.05335 1.21060 0.82230 0.90753 1.04681 1.43267 1.04233 1.63077 1.04683 1.19353 1.12085 1.24927 0.92043 0.89158 1.25459 0.96474 0.93283 1.00400 1.69943 1.30346 1.13760 1.34254 0.86179 0.79513 0.77941 0.82586 1.20150 1.20829 1.19122 1.20197 0.88375 0.80563 0.83967 1.90605 1.70170 1.54139 1.32231 1.19938 0.95275 0.98944 0.90283 0.85977 1.21606 1.01014 0.92365 1.04005 1.22214 0.94562 0.94868 0.84111 1.22128 1.05287 1.02659 0.95072 1.19960 1.00061 0.99025 0.93386 1.20224 0.97843 0.97636 0.93827 1.20673 1.01110 1.00395 0.93909 1.20811 0.96469 0.95550 0.99606 1.19935 1.01862 1.01726 0.88743 1.19728 0.94793 0.93982 0.91358 1.84098 1.56072 1.52624 1.13931 0.88611 0.92168 0.92158 0.87716 0.88237 0.91752 0.87523 0.91694 0.92518 0.89197 0.92599 0.82666 0.85919 0.85851 0.85274 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.01 10.57 -39.25 -0.41 -6.42 16 3 C 0.47 8.95 7.96 36.01 0.29 9.24 16 4 O -0.51 -10.98 15.73 -18.75 -0.29 -11.27 16 5 C -0.13 -2.48 6.11 -27.88 -0.17 -2.65 16 6 C 0.14 3.18 4.17 -4.04 -0.02 3.17 16 7 N -0.43 -10.13 2.49 -114.81 -0.29 -10.42 16 8 C -0.36 -8.11 7.88 -14.93 -0.12 -8.23 16 9 H 0.09 1.92 6.78 -52.49 -0.36 1.57 16 10 C 0.05 1.21 4.95 -17.47 -0.09 1.13 16 11 N -0.85 -21.23 11.72 55.50 0.65 -20.58 16 12 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 13 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 16 C 0.48 11.15 6.74 -10.99 -0.07 11.07 16 17 O -0.59 -15.22 15.42 -7.89 -0.12 -15.34 16 18 C -0.02 -0.45 2.43 -92.92 -0.23 -0.68 16 19 H 0.12 2.15 6.56 -51.93 -0.34 1.81 16 20 C -0.13 -2.41 9.11 37.16 0.34 -2.07 16 21 C 0.09 1.74 5.35 -35.80 -0.19 1.55 16 22 C -0.23 -3.89 10.97 -37.62 -0.41 -4.30 16 23 C -0.12 -2.03 6.40 -105.16 -0.67 -2.70 16 24 C -0.08 -1.02 10.05 -39.69 -0.40 -1.42 16 25 C -0.14 -1.64 9.98 -39.94 -0.40 -2.04 16 26 C -0.11 -1.25 10.01 -39.54 -0.40 -1.64 16 27 C -0.10 -1.50 10.07 -39.46 -0.40 -1.90 16 28 C 0.05 0.88 7.42 -38.47 -0.29 0.59 16 29 O -0.17 -3.41 9.94 -9.52 -0.09 -3.51 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.06 1.63 7.57 -51.93 -0.39 1.23 16 36 H 0.11 2.68 5.82 -51.93 -0.30 2.38 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.78 7.64 -51.93 -0.40 1.39 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -30.45 386.86 -7.91 -38.36 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.00 Total: 9.75 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.15 Total: 0.62 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.36 Total: -31.00 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.93 Total: -36.54 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.45 -7.91 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438603882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.127 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds