Wall clock time and date at job start Wed Apr 1 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99854 * 2 1 4 4 O 1.20826 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99783 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46736 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.46742 * 180.02562 * 6 5 3 8 8 C 1.37100 * 120.00111 * 93.83726 * 7 6 5 9 9 H 1.07993 * 120.00000 * 222.60991 * 8 7 6 10 10 C 1.38952 * 119.99671 * 42.60465 * 8 7 6 11 11 N 1.31407 * 120.00222 * 18.45079 * 10 8 7 12 12 Si 1.86801 * 119.99658 * 198.44979 * 10 8 7 13 13 H 1.48496 * 109.47428 * 90.00192 * 12 10 8 14 14 H 1.48501 * 109.47377 * 210.00109 * 12 10 8 15 15 H 1.48503 * 109.47419 * 330.00148 * 12 10 8 16 16 C 1.34773 * 120.00183 * 273.83369 * 7 6 5 17 17 O 1.21296 * 120.00035 * 4.58018 * 16 7 6 18 18 C 1.50695 * 120.00390 * 184.57966 * 16 7 6 19 19 H 1.08998 * 109.47004 * 321.42469 * 18 16 7 20 20 C 1.53006 * 109.47074 * 81.41866 * 18 16 7 21 21 C 1.50698 * 109.47686 * 201.41548 * 18 16 7 22 22 C 1.33998 * 124.92227 * 119.71430 * 21 18 16 23 23 C 1.46785 * 106.18416 * 179.90155 * 22 21 18 24 24 C 1.39402 * 134.36865 * 180.11643 * 23 22 21 25 25 C 1.36736 * 119.71781 * 180.26791 * 24 23 22 26 26 C 1.38740 * 120.41395 * 0.02562 * 25 24 23 27 27 C 1.37842 * 120.68940 * 359.97438 * 26 25 24 28 28 C 1.38944 * 119.81729 * 0.02562 * 27 26 25 29 29 O 1.34447 * 124.92388 * 300.03289 * 21 18 16 30 30 H 1.09001 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47027 * 299.99911 * 1 2 3 32 32 H 1.09000 * 109.46975 * 60.00217 * 1 2 3 33 33 H 1.08993 * 109.46599 * 60.00799 * 5 3 2 34 34 H 1.08996 * 109.47245 * 300.00360 * 5 3 2 35 35 H 1.08998 * 109.46815 * 60.00527 * 6 5 3 36 36 H 1.08997 * 109.47114 * 300.00551 * 6 5 3 37 37 H 0.97004 * 119.99705 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47423 * 183.84618 * 20 18 16 39 39 H 1.09006 * 109.46964 * 303.84024 * 20 18 16 40 40 H 1.08998 * 109.47085 * 63.84101 * 20 18 16 41 41 H 1.07998 * 126.90474 * 0.03562 * 22 21 18 42 42 H 1.08005 * 120.14263 * 0.29500 * 24 23 22 43 43 H 1.08004 * 119.79332 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.65591 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.09286 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1435 2.9344 -1.1836 9 1 7.0410 2.3572 -1.3494 10 6 5.6781 3.7943 -2.1709 11 7 4.8282 4.7484 -1.8641 12 14 6.2607 3.5940 -3.9344 13 1 5.3475 2.6716 -4.6557 14 1 6.2617 4.9170 -4.6087 15 1 7.6361 3.0341 -3.9408 16 6 6.1402 2.7757 1.1655 17 8 5.5456 2.5901 2.2063 18 6 7.6361 2.9580 1.1746 19 1 8.0686 2.4554 0.3095 20 6 7.9683 4.4504 1.1161 21 6 8.2068 2.3656 2.4373 22 6 9.1028 1.3702 2.4808 23 6 9.3712 1.1232 3.9026 24 6 10.1919 0.2383 4.6003 25 6 10.2067 0.2621 5.9674 26 6 9.4103 1.1603 6.6629 27 6 8.5924 2.0427 5.9901 28 6 8.5624 2.0351 4.6010 29 8 7.8863 2.7551 3.6835 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.9563 0.7807 -0.8892 34 1 3.9558 0.7809 0.8907 35 1 3.6101 3.2359 0.8911 36 1 3.6106 3.2364 -0.8888 37 1 4.5036 5.3489 -2.5533 38 1 9.0488 4.5800 1.0538 39 1 7.4981 4.8932 0.2380 40 1 7.5947 4.9413 2.0147 41 1 9.5411 0.8549 1.6389 42 1 10.8137 -0.4628 4.0633 43 1 10.8424 -0.4226 6.5091 44 1 9.4313 1.1683 7.7427 45 1 7.9767 2.7382 6.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438603882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:38 Heat of formation + Delta-G solvation = -106.628539 kcal Electronic energy + Delta-G solvation = -30168.102464 eV Core-core repulsion = 25923.817556 eV Total energy + Delta-G solvation = -4244.284908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.39562 -41.60590 -40.59473 -38.74083 -37.70222 -36.83584 -35.19131 -33.86540 -33.30512 -32.18315 -31.26620 -29.54765 -28.73977 -26.92328 -26.13548 -24.80339 -23.72655 -22.73642 -22.16831 -21.64179 -20.94130 -19.17115 -18.55900 -18.24455 -17.91660 -17.65802 -17.54991 -17.26935 -16.98827 -16.61757 -16.14649 -15.78190 -15.65901 -15.11849 -15.03286 -14.75102 -14.67860 -14.23858 -14.18096 -13.94332 -13.84636 -13.61754 -13.33513 -13.16599 -13.03486 -12.96187 -12.85124 -12.75854 -12.71988 -12.43214 -12.31264 -12.04535 -11.94422 -11.82220 -11.77533 -11.64342 -11.10303 -10.97564 -10.38504 -9.52355 -9.50230 -9.03958 -8.28669 -6.13712 0.00769 0.47016 1.08868 1.38298 1.47233 1.54324 1.63204 1.64567 1.82985 2.00887 2.35798 2.82886 2.90612 3.05836 3.43084 3.78781 3.79445 4.03600 4.10115 4.14444 4.17362 4.20354 4.24710 4.28208 4.28981 4.31959 4.41725 4.51502 4.56347 4.60422 4.66321 4.75861 4.85857 4.92779 4.94777 5.01874 5.21352 5.23539 5.34234 5.36170 5.40646 5.50946 5.54526 5.56028 5.87582 5.97788 6.33957 6.38029 6.65767 7.12954 7.49660 7.95590 8.74967 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.003492 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.124946 B = 8016.825125 C =10099.054288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.143 3.857 7 N -0.441 5.441 8 C -0.360 4.360 9 H 0.111 0.889 10 C 0.012 3.988 11 N -0.890 5.890 12 Si 0.978 3.022 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.247 1.247 16 C 0.469 3.531 17 O -0.624 6.624 18 C -0.014 4.014 19 H 0.142 0.858 20 C -0.122 4.122 21 C 0.052 3.948 22 C -0.214 4.214 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.135 4.135 26 C -0.090 4.090 27 C -0.129 4.129 28 C 0.012 3.988 29 O -0.204 6.204 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.271 0.729 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.183 0.817 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -10.599 6.125 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.154 4.154 6 C 0.019 3.981 7 N -0.159 5.159 8 C -0.486 4.486 9 H 0.128 0.872 10 C -0.192 4.192 11 N -0.526 5.526 12 Si 0.802 3.198 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.170 1.170 16 C 0.258 3.742 17 O -0.511 6.511 18 C -0.035 4.035 19 H 0.159 0.841 20 C -0.179 4.179 21 C 0.004 3.996 22 C -0.233 4.233 23 C -0.149 4.149 24 C -0.097 4.097 25 C -0.153 4.153 26 C -0.107 4.107 27 C -0.148 4.148 28 C -0.035 4.035 29 O -0.106 6.106 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.201 0.799 42 H 0.169 0.831 43 H 0.183 0.817 44 H 0.186 0.814 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.859 -10.024 6.590 13.818 hybrid contribution -0.755 0.671 -0.988 1.413 sum 6.105 -9.353 5.601 12.495 Atomic orbital electron populations 1.23590 0.74731 1.05917 1.02451 1.86509 1.25204 1.32322 1.83825 1.23850 0.92131 0.81297 0.71011 1.90641 1.67854 1.37491 1.46785 1.21685 0.86822 1.00770 1.06107 1.20799 0.82723 0.92769 1.01846 1.43490 1.04179 1.62887 1.05297 1.19776 1.12487 1.24816 0.91565 0.87202 1.26278 0.96346 0.92607 1.04012 1.70079 1.32143 1.14993 1.35355 0.85147 0.79869 0.77296 0.77487 1.20255 1.21663 1.17014 1.20941 0.90258 0.79726 0.83235 1.90565 1.71425 1.55681 1.33441 1.19846 0.92232 0.99592 0.91815 0.84089 1.21509 1.02819 0.91683 1.01928 1.22157 0.96779 0.97006 0.83693 1.22518 1.03526 1.00926 0.96350 1.20261 1.01306 1.00150 0.93175 1.20660 0.97122 0.97061 0.94830 1.21218 1.00485 1.00099 0.93467 1.21349 0.94272 0.93593 1.01512 1.20323 1.03349 1.03259 0.87836 1.20370 0.95794 0.94935 0.92441 1.84011 1.57572 1.54107 1.14898 0.84329 0.92267 0.91965 0.85872 0.88299 0.95257 0.89490 0.91957 0.89196 0.91249 0.94503 0.79943 0.83113 0.81690 0.81449 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.60 10.57 -51.40 -0.54 -12.14 16 3 C 0.47 18.53 7.96 71.24 0.57 19.10 16 4 O -0.54 -24.28 15.73 21.96 0.35 -23.93 16 5 C -0.12 -4.67 6.11 29.85 0.18 -4.48 16 6 C 0.14 7.04 4.17 86.38 0.36 7.40 16 7 N -0.44 -21.36 2.49 -635.55 -1.58 -22.94 16 8 C -0.36 -16.44 7.88 84.04 0.66 -15.78 16 9 H 0.11 4.52 6.78 -2.91 -0.02 4.50 16 10 C 0.01 0.57 4.95 84.93 0.42 0.99 16 11 N -0.89 -46.25 11.72 21.66 0.25 -45.99 16 12 Si 0.98 36.60 29.59 68.60 2.03 38.63 16 13 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 16 C 0.47 22.76 6.74 87.66 0.59 23.35 16 17 O -0.62 -34.45 15.42 9.77 0.15 -34.30 16 18 C -0.01 -0.56 2.43 -12.29 -0.03 -0.59 16 19 H 0.14 4.88 6.56 -2.39 -0.02 4.86 16 20 C -0.12 -4.58 9.11 71.98 0.66 -3.93 16 21 C 0.05 2.02 5.35 24.72 0.13 2.15 16 22 C -0.21 -7.00 10.97 23.54 0.26 -6.75 16 23 C -0.15 -4.71 6.40 -20.21 -0.13 -4.84 16 24 C -0.08 -1.83 10.05 22.20 0.22 -1.61 16 25 C -0.14 -2.52 9.98 22.04 0.22 -2.30 16 26 C -0.09 -1.82 10.01 22.30 0.22 -1.59 16 27 C -0.13 -3.68 10.07 22.35 0.23 -3.45 16 28 C 0.01 0.43 7.42 22.99 0.17 0.60 16 29 O -0.20 -8.79 9.94 3.93 0.04 -8.75 16 30 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 1.41 8.13 -2.39 -0.02 1.40 16 32 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.12 4.49 8.14 -2.39 -0.02 4.47 16 34 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 36 H 0.09 4.63 5.82 -2.39 -0.01 4.61 16 37 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.86 7.64 -2.38 -0.02 2.84 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 43 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -71.81 386.86 7.64 -64.17 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 1.01 Total: 35.17 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.93 Total: 10.08 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.33 Total: -68.94 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -0.01 Total: -79.13 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -71.81 7.64 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438603882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.457 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds