Wall clock time and date at job start Wed Apr 1 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21563 * 120.00432 * 0.02562 * 19 18 2 21 21 C 1.47712 * 119.99779 * 180.02562 * 19 18 2 22 22 C 1.41500 * 126.51820 * 179.71298 * 21 19 18 23 23 C 1.35376 * 105.50122 * 179.90276 * 22 21 19 24 24 N 1.35032 * 107.22582 * 0.35497 * 23 22 21 25 25 C 1.46504 * 124.87938 * 179.76209 * 24 23 22 26 26 F 1.39900 * 109.47184 * 209.97770 * 25 24 23 27 27 F 1.39901 * 109.47224 * 329.97869 * 25 24 23 28 28 N 1.28466 * 110.23518 * 359.76890 * 24 23 22 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08001 * 127.25315 * 0.02562 * 22 21 19 41 41 H 1.07997 * 126.38251 * 180.09408 * 23 22 21 42 42 H 1.09001 * 109.47055 * 89.98068 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1613 -2.4116 21 6 2.6391 -0.7147 -3.5632 22 6 2.8209 -0.1485 -4.8472 23 6 3.2859 -1.1550 -5.6239 24 7 3.3666 -2.2558 -4.8461 25 6 3.8219 -3.5718 -5.3014 26 9 3.1834 -4.5694 -4.5569 27 9 3.5111 -3.7298 -6.6562 28 7 2.9866 -1.9833 -3.6496 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 2.6309 0.8723 -5.1444 41 1 3.5404 -1.0906 -6.6715 42 1 4.9004 -3.6505 -5.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498046327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:26 Heat of formation + Delta-G solvation = -77.249608 kcal Electronic energy + Delta-G solvation = -29493.709774 eV Core-core repulsion = 24761.054805 eV Total energy + Delta-G solvation = -4732.654969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.92901 -48.02379 -42.99332 -39.71269 -38.28402 -36.69184 -34.26654 -33.66081 -33.31691 -31.53138 -31.20162 -30.69641 -27.58474 -27.09643 -25.04675 -23.89312 -23.14700 -22.05321 -21.08972 -20.33437 -19.28070 -19.14879 -18.78736 -18.02247 -17.85712 -17.48346 -16.38773 -16.08488 -15.92424 -15.32894 -15.05221 -14.81238 -14.75938 -14.53654 -14.39806 -14.28920 -14.22446 -13.88211 -13.79969 -13.59201 -13.45410 -13.04992 -12.78752 -12.61758 -12.44206 -11.93069 -11.73078 -11.60305 -11.46425 -11.37919 -11.06869 -10.95702 -10.39870 -10.23829 -10.21881 -9.84655 -9.61690 -9.50898 -9.16803 -8.45937 -8.07119 -7.95768 -6.41805 -3.82509 1.09602 1.33950 1.74439 2.91720 3.00768 3.17643 3.26089 3.26335 3.31744 3.39209 3.86228 3.91193 4.05950 4.25418 4.27520 4.37018 4.76083 4.88401 5.03220 5.19837 5.21553 5.23442 5.28325 5.36708 5.46321 5.58635 5.64778 5.78644 5.86225 5.95938 5.99009 6.06330 6.09451 6.26794 6.40962 7.16823 7.20504 7.49787 7.55137 7.62235 8.06401 8.09732 8.61605 9.18035 9.54527 10.06249 10.76027 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.002601 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.682942 B =10763.228297 C =12917.520260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.708 5.708 19 C 0.610 3.390 20 O -0.528 6.528 21 C 0.007 3.993 22 C -0.167 4.167 23 C -0.004 4.004 24 N -0.350 5.350 25 C 0.504 3.496 26 F -0.166 7.166 27 F -0.175 7.175 28 N -0.243 5.243 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.033 0.967 34 H 0.348 0.652 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.404 0.596 40 H 0.171 0.829 41 H 0.191 0.809 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 -0.443 -18.965 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.359 5.359 19 C 0.393 3.607 20 O -0.402 6.402 21 C -0.156 4.156 22 C -0.194 4.194 23 C -0.143 4.143 24 N -0.148 5.148 25 C 0.371 3.629 26 F -0.147 7.147 27 F -0.156 7.156 28 N -0.077 5.077 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.168 0.832 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.239 0.761 40 H 0.189 0.811 41 H 0.208 0.792 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.362 0.087 -18.656 22.948 hybrid contribution 0.380 -1.227 -0.210 1.302 sum -12.982 -1.140 -18.867 22.930 Atomic orbital electron populations 1.22157 0.94834 1.02205 1.02861 1.21117 0.93561 0.98561 0.82808 0.88096 1.22310 0.88903 0.99063 0.97709 1.60036 1.07464 1.57522 1.05041 1.21693 0.95129 0.96981 0.94480 1.19806 0.88092 0.84213 0.85286 1.90531 1.71129 1.51430 1.33515 1.41855 1.07390 1.50911 1.19914 1.19700 0.81537 1.35042 1.06574 0.87965 1.25257 1.00665 0.96805 0.95216 1.69613 1.36677 1.38687 1.09385 0.85860 0.82241 0.77646 0.78550 1.20372 1.20942 1.19459 1.45869 1.66431 1.14303 1.09296 1.16721 0.77147 0.85539 0.81256 1.90801 1.50391 1.14614 1.84361 1.22216 1.06491 0.90448 0.96454 1.21905 1.05024 1.01104 0.91395 1.22885 1.06128 0.85827 0.99485 1.46722 1.50325 1.09863 1.07866 1.21556 0.96259 0.72773 0.72278 1.93166 1.84797 1.60182 1.76520 1.93145 1.95048 1.94499 1.32943 1.73586 1.14840 1.17476 1.01756 0.91810 0.92475 0.91191 0.89276 0.94891 0.83155 0.89425 0.93830 0.77461 0.91883 0.76075 0.81141 0.79241 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.19 16 2 C 0.14 1.69 2.88 -67.93 -0.20 1.50 16 3 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 4 C 0.05 0.60 5.30 -3.82 -0.02 0.58 16 5 N -0.67 -10.86 6.12 -115.06 -0.70 -11.57 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 8 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 9 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 14 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 N -0.71 -8.77 4.35 -54.79 -0.24 -9.01 16 19 C 0.61 8.57 7.79 -12.39 -0.10 8.47 16 20 O -0.53 -8.68 16.59 5.31 0.09 -8.59 16 21 C 0.01 0.09 7.13 -82.76 -0.59 -0.50 16 22 C -0.17 -1.70 10.81 -39.36 -0.43 -2.13 16 23 C 0.00 -0.03 10.98 -17.16 -0.19 -0.22 16 24 N -0.35 -3.25 3.68 -66.62 -0.24 -3.49 16 25 C 0.50 3.21 6.56 59.85 0.39 3.60 16 26 F -0.17 -1.47 17.26 2.25 0.04 -1.43 16 27 F -0.17 -1.06 16.96 2.25 0.04 -1.02 16 28 N -0.24 -2.92 11.41 33.42 0.38 -2.54 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.35 5.97 7.28 -39.29 -0.29 5.68 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 39 H 0.40 4.69 7.88 -40.82 -0.32 4.37 16 40 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.17 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -35.63 378.79 -5.39 -41.02 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -5.06 Total: 15.72 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -1.13 Total: 13.33 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -0.14 Total: -64.86 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.18 Total: -24.53 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.63 -5.39 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498046327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.231 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds