Wall clock time and date at job start Wed Apr 1 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21563 * 120.00432 * 0.02562 * 19 18 2 21 21 C 1.47712 * 119.99779 * 180.02562 * 19 18 2 22 22 C 1.41500 * 126.51820 * 179.71298 * 21 19 18 23 23 C 1.35376 * 105.50122 * 179.90276 * 22 21 19 24 24 N 1.35032 * 107.22582 * 0.35497 * 23 22 21 25 25 C 1.46504 * 124.87938 * 179.76209 * 24 23 22 26 26 F 1.39900 * 109.47184 * 209.97770 * 25 24 23 27 27 F 1.39901 * 109.47224 * 329.97869 * 25 24 23 28 28 N 1.28466 * 110.23518 * 359.76890 * 24 23 22 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08001 * 127.25315 * 0.02562 * 22 21 19 41 41 H 1.07997 * 126.38251 * 180.09408 * 23 22 21 42 42 H 1.09001 * 109.47055 * 89.98068 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1613 -2.4116 21 6 2.6391 -0.7147 -3.5632 22 6 2.8209 -0.1485 -4.8472 23 6 3.2859 -1.1550 -5.6239 24 7 3.3666 -2.2558 -4.8461 25 6 3.8219 -3.5718 -5.3014 26 9 3.1834 -4.5694 -4.5569 27 9 3.5111 -3.7298 -6.6562 28 7 2.9866 -1.9833 -3.6496 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 2.6309 0.8723 -5.1444 41 1 3.5404 -1.0906 -6.6715 42 1 4.9004 -3.6505 -5.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498046327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:25 Heat of formation + Delta-G solvation = -106.171221 kcal Electronic energy + Delta-G solvation = -29494.963909 eV Core-core repulsion = 24761.054805 eV Total energy + Delta-G solvation = -4733.909104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.46191 -48.57396 -43.75240 -40.77559 -40.10693 -37.87807 -36.03897 -35.12841 -34.11217 -33.26173 -32.35469 -31.56930 -28.98251 -27.78216 -26.70830 -24.92614 -24.35945 -22.75844 -22.01986 -21.31697 -21.05761 -19.92621 -19.81289 -19.31085 -18.73878 -18.27137 -17.78067 -17.30122 -16.92179 -16.70948 -16.37807 -16.08754 -15.77718 -15.60490 -15.39216 -15.32655 -15.18089 -15.05190 -14.88365 -14.49428 -14.37221 -14.27310 -13.98886 -13.56378 -13.39724 -13.27576 -13.09423 -13.03012 -12.80257 -12.69521 -12.42149 -12.19666 -12.12282 -11.94634 -11.51337 -11.31973 -10.67974 -10.37732 -10.34702 -10.13643 -10.01798 -9.33976 -8.47022 -5.95720 0.26443 0.70885 1.00012 1.37733 1.41506 1.54098 2.04542 2.05532 2.27247 2.28872 2.49310 2.76202 2.89106 3.20415 3.45608 3.47390 3.54659 3.72287 3.84415 4.05908 4.19455 4.26769 4.36594 4.50087 4.53600 4.58786 4.61289 4.68014 4.74189 4.78905 5.03110 5.11904 5.27742 5.40516 5.42960 5.45395 5.86295 6.08479 6.28369 6.33367 6.60184 6.61885 7.07470 7.12501 7.56110 8.11881 8.70395 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.002601 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.682942 B =10763.228297 C =12917.520260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.075 0.925 4 C 0.056 3.944 5 N -0.687 5.687 6 C 0.064 3.936 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.273 1.273 18 N -0.702 5.702 19 C 0.604 3.396 20 O -0.562 6.562 21 C -0.021 4.021 22 C -0.188 4.188 23 C 0.018 3.982 24 N -0.352 5.352 25 C 0.500 3.500 26 F -0.182 7.182 27 F -0.171 7.171 28 N -0.264 5.264 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.341 0.659 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.408 0.592 40 H 0.178 0.822 41 H 0.232 0.768 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 -1.520 -19.258 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.093 0.907 4 C -0.073 4.073 5 N -0.320 5.320 6 C -0.068 4.068 7 C 0.224 3.776 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.353 5.353 19 C 0.389 3.611 20 O -0.440 6.440 21 C -0.183 4.183 22 C -0.216 4.216 23 C -0.122 4.122 24 N -0.149 5.149 25 C 0.369 3.631 26 F -0.164 7.164 27 F -0.152 7.152 28 N -0.098 5.098 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.195 0.805 41 H 0.249 0.751 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.588 -1.022 -18.913 23.311 hybrid contribution 0.414 -0.911 -0.192 1.019 sum -13.174 -1.933 -19.105 23.288 Atomic orbital electron populations 1.22073 0.92761 1.03137 1.03090 1.21136 0.95056 0.97143 0.82659 0.90676 1.22389 0.86166 1.00569 0.98198 1.60023 1.10303 1.57504 1.04158 1.21566 0.90234 0.99137 0.95833 1.20927 0.90730 0.82172 0.83820 1.90499 1.72867 1.52784 1.35015 1.41916 1.06835 1.51562 1.20623 1.19652 0.83109 1.36908 1.06746 0.90495 1.26025 1.04872 0.95784 0.94488 1.69668 1.38278 1.38477 1.09641 0.84943 0.76898 0.78201 0.78387 1.19751 1.19401 1.19751 1.45890 1.65826 1.14395 1.09156 1.17020 0.76732 0.85302 0.82069 1.90762 1.52158 1.15985 1.85052 1.22191 1.08042 0.91223 0.96840 1.22152 1.06218 1.02248 0.90960 1.23477 1.03541 0.84474 1.00665 1.47110 1.49288 1.11224 1.07321 1.22267 0.97682 0.71156 0.71969 1.93131 1.85324 1.60841 1.77057 1.93154 1.95163 1.94309 1.32590 1.73509 1.15728 1.17210 1.03379 0.93268 0.91114 0.89273 0.87612 0.92513 0.84060 0.87333 0.91082 0.76893 0.91266 0.75613 0.80502 0.75115 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.48 71.98 0.68 -2.04 16 2 C 0.14 3.34 2.88 44.99 0.13 3.47 16 3 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 4 C 0.06 1.22 5.30 86.30 0.46 1.67 16 5 N -0.69 -21.77 6.12 -517.93 -3.17 -24.94 16 6 C 0.06 2.17 6.17 85.56 0.53 2.69 16 7 C 0.44 20.87 7.82 87.66 0.69 21.56 16 8 O -0.63 -35.30 15.78 -3.07 -0.05 -35.35 16 9 N -0.57 -29.38 5.29 -307.00 -1.62 -31.00 16 10 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 14 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 N -0.70 -17.71 4.35 -445.54 -1.94 -19.65 16 19 C 0.60 17.74 7.79 86.75 0.68 18.42 16 20 O -0.56 -19.52 16.59 -3.92 -0.06 -19.59 16 21 C -0.02 -0.54 7.13 42.46 0.30 -0.24 16 22 C -0.19 -3.81 10.81 22.41 0.24 -3.57 16 23 C 0.02 0.26 10.98 83.54 0.92 1.17 16 24 N -0.35 -6.05 3.68 -364.67 -1.34 -7.39 16 25 C 0.50 5.39 6.56 127.77 0.84 6.22 16 26 F -0.18 -3.05 17.26 44.97 0.78 -2.27 16 27 F -0.17 -1.66 16.96 44.97 0.76 -0.90 16 28 N -0.26 -6.31 11.41 -48.17 -0.55 -6.86 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.34 11.67 7.28 -89.69 -0.65 11.01 16 35 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 38 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.41 9.56 7.88 -92.71 -0.73 8.83 16 40 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.21 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -79.78 378.79 0.85 -78.94 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -1.01 Total: 42.38 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 6.74 Total: 30.91 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -8.34 Total: -139.03 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.11 Total: -54.94 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 1.54 Total: -3.17 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -79.78 0.85 -78.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498046327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.234 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds