Wall clock time and date at job start Wed Apr 1 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47232 * 2 1 4 4 C 1.50702 * 109.46987 * 240.00164 * 2 1 3 5 5 H 1.07997 * 120.00402 * 240.00586 * 4 2 1 6 6 C 1.37886 * 119.99777 * 60.27756 * 4 2 1 7 7 N 1.31505 * 120.00031 * 359.72553 * 6 4 2 8 8 Si 1.86800 * 119.99911 * 179.72191 * 6 4 2 9 9 H 1.48504 * 109.46934 * 60.00236 * 8 6 4 10 10 H 1.48492 * 109.47205 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47182 * 300.00467 * 8 6 4 12 12 N 1.46496 * 109.46690 * 120.00587 * 2 1 3 13 13 C 1.34773 * 120.00112 * 274.98973 * 12 2 1 14 14 O 1.21278 * 119.99898 * 354.47865 * 13 12 2 15 15 C 1.50696 * 120.00332 * 174.46660 * 13 12 2 16 16 C 1.50702 * 115.55281 * 302.21149 * 15 13 12 17 17 C 1.38304 * 119.92996 * 147.94881 * 16 15 13 18 18 C 1.38517 * 120.21047 * 179.76734 * 17 16 15 19 19 F 1.35094 * 119.96725 * 180.23632 * 18 17 16 20 20 C 1.38280 * 120.06256 * 0.51515 * 18 17 16 21 21 C 1.39245 * 119.85689 * 359.73806 * 20 18 17 22 22 C 1.48467 * 120.10455 * 179.97438 * 21 20 18 23 23 N 1.34039 * 126.67571 * 179.71511 * 22 21 20 24 24 N 1.28994 * 107.27032 * 179.83734 * 23 22 21 25 25 N 1.28723 * 108.93894 * 0.43164 * 24 23 22 26 26 H 0.97003 * 125.34406 * 179.70183 * 25 24 23 27 27 N 1.28872 * 109.32233 * 359.72472 * 25 24 23 28 28 C 1.38017 * 119.92618 * 328.22949 * 16 15 13 29 29 C 1.52998 * 117.50346 * 156.53785 * 15 13 12 30 30 C 1.52998 * 117.49884 * 87.87912 * 15 13 12 31 31 H 1.08993 * 109.47182 * 299.99761 * 1 2 3 32 32 H 1.09005 * 109.46673 * 59.99347 * 1 2 3 33 33 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 34 34 H 0.96996 * 119.99956 * 180.02562 * 7 6 4 35 35 H 0.97000 * 119.99908 * 95.00539 * 12 2 1 36 36 H 1.08002 * 119.89112 * 0.02562 * 17 16 15 37 37 H 1.08000 * 120.06929 * 179.76684 * 20 18 17 38 38 H 1.08002 * 120.03600 * 0.02562 * 28 16 15 39 39 H 1.09004 * 117.49246 * 0.02562 * 29 15 13 40 40 H 1.08997 * 117.50439 * 145.01934 * 29 15 13 41 41 H 1.09002 * 117.50127 * 214.98414 * 30 15 13 42 42 H 1.09001 * 117.49887 * 0.02562 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.7039 -0.2359 -2.4828 7 7 0.9480 0.8334 -2.6034 8 14 2.3330 -1.1119 -4.0080 9 1 1.8385 -2.5122 -4.0139 10 1 1.8429 -0.4083 -5.2204 11 1 3.8180 -1.1113 -4.0022 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.9555 1.1786 2.3891 15 6 2.5292 -0.7543 3.6155 16 6 1.6080 -1.8774 4.0168 17 6 2.1156 -2.9870 4.6680 18 6 1.2735 -4.0205 5.0438 19 9 1.7738 -5.0999 5.6838 20 6 -0.0780 -3.9511 4.7594 21 6 -0.5912 -2.8377 4.0993 22 6 -2.0412 -2.7577 3.7906 23 7 -2.6732 -1.7520 3.1694 24 7 -3.9207 -2.0717 3.0947 25 7 -4.0911 -3.2216 3.6476 26 1 -4.9391 -3.6858 3.7272 27 7 -2.9584 -3.6593 4.0793 28 6 0.2605 -1.7992 3.7287 29 6 3.1858 0.0551 4.7355 30 6 4.0210 -0.9254 3.9085 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7166 1.1669 -3.4843 35 1 2.2490 -1.6319 1.1524 36 1 3.1714 -3.0459 4.8878 37 1 -0.7341 -4.7586 5.0490 38 1 -0.1332 -0.9341 3.2157 39 1 3.3411 1.1201 4.5623 40 1 2.9518 -0.2248 5.7626 41 1 4.3362 -1.8501 4.3919 42 1 4.7262 -0.5053 3.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:56 Heat of formation + Delta-G solvation = 94.467146 kcal Electronic energy + Delta-G solvation = -29905.346069 eV Core-core repulsion = 25610.906522 eV Total energy + Delta-G solvation = -4294.439547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.07081 -44.58394 -40.34834 -38.57342 -36.46751 -34.70920 -34.45800 -33.57655 -32.33154 -30.79997 -30.57885 -28.91770 -25.52284 -25.18935 -24.73184 -24.10920 -22.74156 -22.44100 -21.61739 -20.30523 -19.46072 -19.04760 -18.01660 -17.26714 -16.74817 -16.43319 -16.25861 -15.78094 -15.68972 -15.26657 -15.14833 -14.92113 -14.40518 -14.13097 -13.71519 -13.35028 -13.18866 -12.95701 -12.68113 -12.47851 -12.35152 -11.95460 -11.86652 -11.64634 -11.52132 -11.37277 -11.25393 -11.20720 -11.06243 -10.93374 -10.74104 -10.60318 -10.40949 -10.27790 -10.17971 -9.11316 -9.00865 -8.87822 -8.74373 -8.51647 -7.87450 -6.08480 -4.17440 0.41063 0.94944 1.05195 2.07452 2.12904 3.11764 3.27732 3.32925 3.33906 3.34492 3.41877 3.79401 3.93354 4.02425 4.20281 4.38952 4.48705 4.62453 4.80206 4.92817 4.97124 5.05874 5.12417 5.22376 5.24761 5.30904 5.52463 5.58325 5.70895 5.81888 5.87499 5.96626 6.12616 6.15852 6.21271 6.27623 6.59539 6.89828 7.04780 7.20525 7.48708 7.60338 7.73608 7.96350 8.02177 8.19684 8.68751 8.80792 9.12097 9.49544 10.97418 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008278 B = 0.004034 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.527638 B = 6939.477961 C = 8639.150609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.540 3.460 14 O -0.546 6.546 15 C -0.127 4.127 16 C -0.008 4.008 17 C -0.132 4.132 18 C 0.100 3.900 19 F -0.136 7.136 20 C -0.121 4.121 21 C 0.017 3.983 22 C 0.218 3.782 23 N -0.250 5.250 24 N -0.044 5.044 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.293 5.293 28 C -0.067 4.067 29 C -0.132 4.132 30 C -0.155 4.155 31 H 0.016 0.984 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.389 0.611 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -11.062 17.233 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.345 5.345 13 C 0.323 3.677 14 O -0.424 6.424 15 C -0.131 4.131 16 C -0.008 4.008 17 C -0.151 4.151 18 C 0.081 3.919 19 F -0.114 7.114 20 C -0.142 4.142 21 C 0.013 3.987 22 C -0.062 4.062 23 N -0.123 5.123 24 N -0.040 5.040 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.145 5.145 28 C -0.088 4.088 29 C -0.169 4.169 30 C -0.192 4.192 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.158 -9.815 16.827 19.919 hybrid contribution 0.154 -1.776 -0.662 1.902 sum -4.004 -11.591 16.165 20.290 Atomic orbital electron populations 1.22050 0.98079 0.99165 1.00939 1.18785 0.91106 0.94004 0.79825 0.93232 1.21162 1.32549 1.13102 0.90329 0.92202 1.24865 0.94841 0.94929 0.98956 1.69890 1.35819 1.22346 1.23928 0.86538 0.79183 0.79578 0.81961 1.20245 1.21151 1.20188 1.46461 1.64239 1.13637 1.10151 1.19047 0.78099 0.87008 0.83538 1.90672 1.51591 1.14391 1.85744 1.20328 0.95092 0.99298 0.98372 1.18499 0.92556 0.93069 0.96712 1.21158 1.00842 0.92762 1.00367 1.17231 0.91598 0.85194 0.97890 1.91516 1.87775 1.52804 1.79326 1.21015 0.94070 0.98870 1.00197 1.16798 0.85556 0.95423 1.00898 1.23478 0.95610 0.88178 0.98905 1.76252 0.96949 1.22972 1.16139 1.79011 1.12940 0.99074 1.12928 1.47740 1.10179 1.13577 1.35967 0.67090 1.74872 0.92319 1.25659 1.21686 1.21182 0.91992 0.98384 0.97208 1.23068 1.00255 0.98840 0.94762 1.23189 0.90885 1.01805 1.03297 0.96529 0.89231 0.95524 0.92555 0.77836 0.83791 0.83723 0.83515 0.86984 0.87978 0.87708 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.71 2.60 -69.08 -0.18 6.53 16 3 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 7 N -0.88 -24.98 11.33 55.43 0.63 -24.35 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 N -0.70 -14.45 5.05 -54.94 -0.28 -14.73 16 13 C 0.54 10.55 5.98 -10.99 -0.07 10.49 16 14 O -0.55 -12.83 16.15 5.56 0.09 -12.74 16 15 C -0.13 -1.82 2.37 -156.82 -0.37 -2.19 16 16 C -0.01 -0.10 5.45 -104.68 -0.57 -0.67 16 17 C -0.13 -1.42 9.35 -39.45 -0.37 -1.79 16 18 C 0.10 1.10 7.29 -39.46 -0.29 0.81 16 19 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 20 C -0.12 -1.36 9.68 -39.19 -0.38 -1.74 16 21 C 0.02 0.22 5.87 -104.90 -0.62 -0.40 16 22 C 0.22 3.01 7.94 -156.31 -1.24 1.77 16 23 N -0.25 -3.89 12.23 32.16 0.39 -3.50 16 24 N -0.04 -0.57 13.47 60.35 0.81 0.24 16 25 N -0.23 -2.10 7.90 60.35 0.48 -1.63 16 26 H 0.47 1.84 8.96 -340.37 -3.05 -1.21 16 27 N -0.29 -3.33 12.08 32.17 0.39 -2.94 16 28 C -0.07 -0.98 8.97 -39.26 -0.35 -1.33 16 29 C -0.13 -1.58 9.73 -26.70 -0.26 -1.84 16 30 C -0.15 -1.72 9.57 -26.70 -0.26 -1.98 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.46 6.08 -51.93 -0.32 2.14 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.39 7.24 8.54 -40.82 -0.35 6.90 16 36 H 0.14 1.24 5.92 -52.49 -0.31 0.93 16 37 H 0.14 1.41 7.88 -52.49 -0.41 1.00 16 38 H 0.15 2.51 7.21 -52.49 -0.38 2.13 16 39 H 0.11 1.49 7.86 -51.93 -0.41 1.08 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.88 6.07 -51.93 -0.32 0.56 16 42 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.96 369.09 -9.07 -42.03 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.16 Total: 6.07 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -5.00 Total: -8.33 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 2.42 Total: -46.91 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.96 -9.07 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.498 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds