Wall clock time and date at job start Wed Apr 1 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.47232 * 2 1 4 4 C 1.50702 * 109.46987 * 240.00164 * 2 1 3 5 5 H 1.07997 * 120.00402 * 240.00586 * 4 2 1 6 6 C 1.37886 * 119.99777 * 60.27756 * 4 2 1 7 7 N 1.31505 * 120.00031 * 359.72553 * 6 4 2 8 8 Si 1.86800 * 119.99911 * 179.72191 * 6 4 2 9 9 H 1.48504 * 109.46934 * 60.00236 * 8 6 4 10 10 H 1.48492 * 109.47205 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47182 * 300.00467 * 8 6 4 12 12 N 1.46496 * 109.46690 * 120.00587 * 2 1 3 13 13 C 1.34773 * 120.00112 * 274.98973 * 12 2 1 14 14 O 1.21278 * 119.99898 * 354.47865 * 13 12 2 15 15 C 1.50696 * 120.00332 * 174.46660 * 13 12 2 16 16 C 1.50702 * 115.55281 * 302.21149 * 15 13 12 17 17 C 1.38304 * 119.92996 * 147.94881 * 16 15 13 18 18 C 1.38517 * 120.21047 * 179.76734 * 17 16 15 19 19 F 1.35094 * 119.96725 * 180.23632 * 18 17 16 20 20 C 1.38280 * 120.06256 * 0.51515 * 18 17 16 21 21 C 1.39245 * 119.85689 * 359.73806 * 20 18 17 22 22 C 1.48467 * 120.10455 * 179.97438 * 21 20 18 23 23 N 1.34039 * 126.67571 * 179.71511 * 22 21 20 24 24 N 1.28994 * 107.27032 * 179.83734 * 23 22 21 25 25 N 1.28723 * 108.93894 * 0.43164 * 24 23 22 26 26 H 0.97003 * 125.34406 * 179.70183 * 25 24 23 27 27 N 1.28872 * 109.32233 * 359.72472 * 25 24 23 28 28 C 1.38017 * 119.92618 * 328.22949 * 16 15 13 29 29 C 1.52998 * 117.50346 * 156.53785 * 15 13 12 30 30 C 1.52998 * 117.49884 * 87.87912 * 15 13 12 31 31 H 1.08993 * 109.47182 * 299.99761 * 1 2 3 32 32 H 1.09005 * 109.46673 * 59.99347 * 1 2 3 33 33 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 34 34 H 0.96996 * 119.99956 * 180.02562 * 7 6 4 35 35 H 0.97000 * 119.99908 * 95.00539 * 12 2 1 36 36 H 1.08002 * 119.89112 * 0.02562 * 17 16 15 37 37 H 1.08000 * 120.06929 * 179.76684 * 20 18 17 38 38 H 1.08002 * 120.03600 * 0.02562 * 28 16 15 39 39 H 1.09004 * 117.49246 * 0.02562 * 29 15 13 40 40 H 1.08997 * 117.50439 * 145.01934 * 29 15 13 41 41 H 1.09002 * 117.50127 * 214.98414 * 30 15 13 42 42 H 1.09001 * 117.49887 * 0.02562 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.7039 -0.2359 -2.4828 7 7 0.9480 0.8334 -2.6034 8 14 2.3330 -1.1119 -4.0080 9 1 1.8385 -2.5122 -4.0139 10 1 1.8429 -0.4083 -5.2204 11 1 3.8180 -1.1113 -4.0022 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.9555 1.1786 2.3891 15 6 2.5292 -0.7543 3.6155 16 6 1.6080 -1.8774 4.0168 17 6 2.1156 -2.9870 4.6680 18 6 1.2735 -4.0205 5.0438 19 9 1.7738 -5.0999 5.6838 20 6 -0.0780 -3.9511 4.7594 21 6 -0.5912 -2.8377 4.0993 22 6 -2.0412 -2.7577 3.7906 23 7 -2.6732 -1.7520 3.1694 24 7 -3.9207 -2.0717 3.0947 25 7 -4.0911 -3.2216 3.6476 26 1 -4.9391 -3.6858 3.7272 27 7 -2.9584 -3.6593 4.0793 28 6 0.2605 -1.7992 3.7287 29 6 3.1858 0.0551 4.7355 30 6 4.0210 -0.9254 3.9085 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7166 1.1669 -3.4843 35 1 2.2490 -1.6319 1.1524 36 1 3.1714 -3.0459 4.8878 37 1 -0.7341 -4.7586 5.0490 38 1 -0.1332 -0.9341 3.2157 39 1 3.3411 1.1201 4.5623 40 1 2.9518 -0.2248 5.7626 41 1 4.3362 -1.8501 4.3919 42 1 4.7262 -0.5053 3.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:55 Heat of formation + Delta-G solvation = 72.123548 kcal Electronic energy + Delta-G solvation = -29906.314960 eV Core-core repulsion = 25610.906522 eV Total energy + Delta-G solvation = -4295.408438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.92015 -45.54691 -41.54878 -39.88234 -37.70664 -36.56721 -35.45186 -34.54466 -34.28519 -31.79544 -31.51574 -30.84632 -27.34918 -26.52134 -25.73007 -25.30287 -23.81783 -23.49615 -22.70844 -21.98235 -20.76254 -20.23504 -19.23135 -18.22378 -18.18661 -17.53543 -17.26397 -17.14420 -17.07438 -16.61440 -16.23497 -16.15962 -15.88856 -15.31782 -15.12460 -14.74680 -14.41269 -14.26335 -13.94135 -13.91305 -13.61198 -13.44893 -13.06462 -12.98233 -12.84118 -12.78034 -12.72762 -12.51268 -12.32487 -12.27297 -12.23433 -12.17181 -12.08556 -11.61060 -11.43248 -11.10342 -10.72156 -10.56607 -9.81312 -9.78467 -9.67228 -8.16217 -6.33637 -0.51511 0.00214 0.08662 1.12878 1.35174 1.44195 1.46491 1.54256 1.68001 2.32312 2.36782 2.46281 2.54763 2.90947 2.98873 3.13521 3.17408 3.50534 3.71300 3.82205 3.92238 3.97842 4.00666 4.10075 4.18811 4.32818 4.46955 4.69524 4.74230 4.76543 4.89187 4.92540 4.94369 5.02961 5.10631 5.16268 5.24114 5.31190 5.44201 5.56429 5.61525 5.68414 5.69707 5.90130 6.10324 6.73409 6.96247 7.04180 7.32840 7.53849 8.89985 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008278 B = 0.004034 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.527638 B = 6939.477961 C = 8639.150609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.273 3.727 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.695 5.695 13 C 0.538 3.462 14 O -0.595 6.595 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.113 4.113 18 C 0.108 3.892 19 F -0.130 7.130 20 C -0.111 4.111 21 C 0.009 3.991 22 C 0.204 3.796 23 N -0.297 5.297 24 N -0.058 5.058 25 N -0.195 5.195 26 H 0.496 0.504 27 N -0.281 5.281 28 C -0.087 4.087 29 C -0.127 4.127 30 C -0.127 4.127 31 H 0.009 0.991 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -14.621 18.764 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.170 3.830 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.193 1.193 12 N -0.342 5.342 13 C 0.324 3.676 14 O -0.477 6.477 15 C -0.148 4.148 16 C -0.009 4.009 17 C -0.132 4.132 18 C 0.089 3.911 19 F -0.108 7.108 20 C -0.131 4.131 21 C 0.006 3.994 22 C -0.075 4.075 23 N -0.169 5.169 24 N -0.053 5.053 25 N -0.046 5.046 26 H 0.356 0.644 27 N -0.134 5.134 28 C -0.108 4.108 29 C -0.164 4.164 30 C -0.164 4.164 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.194 0.806 37 H 0.179 0.821 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.729 -13.408 18.382 22.916 hybrid contribution -0.380 -0.675 -1.068 1.320 sum -3.109 -14.084 17.314 22.534 Atomic orbital electron populations 1.21812 0.98324 0.98866 0.99292 1.18329 0.90806 0.91991 0.81911 0.98165 1.21485 1.32682 1.13441 0.90776 0.90964 1.25790 0.94884 0.95539 1.02277 1.70050 1.36977 1.23883 1.24612 0.85418 0.78801 0.78586 0.77658 1.19114 1.21169 1.19309 1.46179 1.64502 1.14022 1.09525 1.19925 0.76306 0.86622 0.84699 1.90638 1.53427 1.16939 1.86683 1.20060 0.97853 1.00556 0.96361 1.18307 0.91414 0.93476 0.97668 1.21297 1.02253 0.91097 0.98597 1.17180 0.91339 0.85224 0.97365 1.91542 1.87634 1.52507 1.79121 1.21134 0.94691 0.98287 0.99023 1.16807 0.85225 0.95807 1.01603 1.23679 0.96342 0.88258 0.99270 1.76238 0.98029 1.24668 1.17949 1.78936 1.12278 1.00284 1.13783 1.47812 1.10737 1.12493 1.33594 0.64437 1.74834 0.92369 1.24884 1.21300 1.20958 0.93237 0.97997 0.98620 1.23198 0.99552 0.98019 0.95680 1.23401 0.88005 1.02949 1.02018 0.97238 0.91663 0.94926 0.92588 0.76351 0.80572 0.82077 0.87324 0.89039 0.84874 0.83502 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 14.58 2.60 44.25 0.12 14.69 16 3 H 0.00 0.03 7.50 -2.39 -0.02 0.01 16 4 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.83 5.31 84.66 0.45 1.28 16 7 N -0.92 -53.73 11.33 21.45 0.24 -53.49 16 8 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 N -0.70 -29.79 5.05 -446.12 -2.25 -32.04 16 13 C 0.54 21.89 5.98 87.66 0.52 22.41 16 14 O -0.60 -29.94 16.15 -3.02 -0.05 -29.98 16 15 C -0.15 -4.00 2.37 -53.68 -0.13 -4.12 16 16 C -0.01 -0.20 5.45 -19.90 -0.11 -0.31 16 17 C -0.11 -2.00 9.35 22.35 0.21 -1.79 16 18 C 0.11 1.97 7.29 22.35 0.16 2.14 16 19 F -0.13 -2.27 17.26 44.97 0.78 -1.49 16 20 C -0.11 -2.21 9.68 22.52 0.22 -2.00 16 21 C 0.01 0.23 5.87 -20.05 -0.12 0.11 16 22 C 0.20 5.64 7.94 137.38 1.09 6.73 16 23 N -0.30 -9.62 12.23 -52.18 -0.64 -10.26 16 24 N -0.06 -1.51 13.47 37.02 0.50 -1.02 16 25 N -0.19 -3.38 7.90 37.02 0.29 -3.08 16 26 H 0.50 2.99 8.96 -347.54 -3.12 -0.13 16 27 N -0.28 -6.02 12.08 -52.13 -0.63 -6.65 16 28 C -0.09 -2.57 8.97 22.48 0.20 -2.37 16 29 C -0.13 -2.82 9.73 30.62 0.30 -2.52 16 30 C -0.13 -2.42 9.57 30.62 0.29 -2.13 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 3.80 6.08 -2.38 -0.01 3.78 16 33 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.40 15.03 8.54 -92.71 -0.79 14.24 16 36 H 0.18 1.93 5.92 -2.91 -0.02 1.91 16 37 H 0.16 2.65 7.88 -2.91 -0.02 2.63 16 38 H 0.11 4.04 7.21 -2.91 -0.02 4.02 16 39 H 0.09 2.43 7.86 -2.39 -0.02 2.41 16 40 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.15 1.58 6.07 -2.39 -0.01 1.57 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.67 369.09 1.58 -75.09 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -2.78 Total: 21.33 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 4.10 Total: -3.09 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -2.49 Total: -106.55 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -76.67 1.58 -75.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.212 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds