Wall clock time and date at job start Wed Apr 1 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46932 * 2 1 4 4 C 1.34226 * 116.99921 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99943 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00251 * 179.97438 * 4 3 2 7 7 S 1.81394 * 109.44561 * 45.03467 * 6 4 3 8 8 C 1.81398 * 103.00252 * 299.96634 * 7 6 4 9 9 O 1.42101 * 109.47289 * 183.57961 * 7 6 4 10 10 C 1.53038 * 109.46273 * 164.99954 * 6 4 3 11 11 C 1.53191 * 109.31261 * 181.38667 * 10 6 4 12 12 N 1.46926 * 108.77451 * 305.36750 * 11 10 6 13 13 C 1.34780 * 120.62707 * 233.58792 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 C 1.46921 * 118.74177 * 53.86188 * 12 11 10 26 26 C 1.53041 * 109.45892 * 285.07297 * 6 4 3 27 27 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47412 * 299.99950 * 1 2 3 29 29 H 1.09002 * 109.47087 * 60.00336 * 1 2 3 30 30 H 1.08989 * 109.47283 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.47087 * 119.99664 * 2 1 3 32 32 H 1.08998 * 109.47129 * 60.00204 * 8 7 6 33 33 H 1.09002 * 109.47596 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47094 * 300.00244 * 8 7 6 35 35 H 1.09002 * 109.49670 * 61.43612 * 10 6 4 36 36 H 1.08995 * 109.49620 * 301.34153 * 10 6 4 37 37 H 1.09003 * 109.58572 * 185.57865 * 11 10 6 38 38 H 1.08997 * 109.58641 * 65.15588 * 11 10 6 39 39 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 40 40 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 41 41 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 42 42 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58542 * 65.92391 * 25 12 11 45 45 H 1.08999 * 109.58977 * 186.35239 * 25 12 11 46 46 H 1.08999 * 109.49703 * 298.55915 * 26 6 4 47 47 H 1.09000 * 109.50029 * 58.65949 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 16 3.0340 3.9582 1.2092 8 6 1.3236 3.9116 0.6066 9 8 3.5205 5.2921 1.1506 10 6 5.4033 2.8761 0.3742 11 6 5.9769 4.2962 0.4064 12 7 5.7065 4.9448 -0.8839 13 6 6.7072 5.4984 -1.5972 14 8 7.8437 5.4644 -1.1752 15 6 6.4137 6.1605 -2.9188 16 6 7.7130 6.7033 -3.5170 17 6 7.4197 7.3649 -4.8388 18 1 6.4076 7.3956 -5.2144 19 6 8.4432 7.9320 -5.5681 20 7 9.6756 7.8951 -5.1104 21 14 8.0797 8.7515 -7.2069 22 1 7.1242 9.8694 -7.0002 23 1 9.3405 9.2795 -7.7868 24 1 7.4849 7.7576 -8.1362 25 6 4.3238 4.9839 -1.3789 26 6 3.7695 3.5512 -1.3938 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9719 2.8801 0.5910 33 1 0.6892 4.5023 1.2675 34 1 1.2821 4.3249 -0.4012 35 1 5.9411 2.2833 -0.3657 36 1 5.5118 2.4175 1.3570 37 1 7.0529 4.2520 0.5748 38 1 5.5027 4.8637 1.2071 39 1 5.9758 5.4318 -3.6010 40 1 5.7135 6.9818 -2.7661 41 1 8.1505 7.4321 -2.8346 42 1 8.4136 5.8824 -3.6696 43 1 10.3956 8.2944 -5.6233 44 1 3.7175 5.6064 -0.7208 45 1 4.3086 5.3935 -2.3889 46 1 4.3226 2.9520 -2.1171 47 1 2.7151 3.5731 -1.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627828676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:38 Heat of formation + Delta-G solvation = -149.626649 kcal Electronic energy + Delta-G solvation = -29602.538684 eV Core-core repulsion = 25491.833190 eV Total energy + Delta-G solvation = -4110.705494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16925 -39.73483 -37.60970 -36.85280 -35.97220 -33.49973 -33.21126 -32.17075 -31.70922 -30.62494 -29.02809 -26.92486 -25.53051 -23.76009 -23.47269 -22.36254 -21.43469 -20.68451 -18.86969 -18.42352 -17.61407 -17.26534 -17.03346 -16.61826 -16.06034 -15.77655 -15.21570 -15.13812 -14.97210 -14.59728 -14.40602 -14.15498 -14.00784 -13.62690 -13.44238 -13.22620 -13.15595 -13.00368 -12.91741 -12.55591 -12.41801 -12.34017 -12.15143 -11.93753 -11.86478 -11.69955 -11.38003 -11.20984 -11.00320 -10.97275 -10.89198 -10.65564 -10.58158 -10.14393 -9.91630 -9.57394 -9.13826 -8.94221 -8.71529 -8.30598 -8.21470 -5.92830 -3.97238 0.91783 1.82458 2.03262 2.13071 3.27528 3.30702 3.35920 3.36489 3.40583 3.42739 4.05771 4.11497 4.42231 4.45675 4.48076 4.49440 4.73887 4.79534 4.82887 4.98077 5.02104 5.09297 5.21541 5.28437 5.28815 5.36147 5.40997 5.41689 5.47874 5.56032 5.63351 5.74937 5.91877 5.95456 6.03258 6.13803 6.23896 6.27257 6.77425 6.95228 7.29029 7.77242 7.81902 7.90784 8.11081 8.42140 8.81535 9.10973 9.65778 11.18152 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002602 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.720736 B =10757.910417 C =11094.933956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.058 3.942 3 O -0.357 6.357 4 C 0.494 3.506 5 O -0.486 6.486 6 C -0.376 4.376 7 S 1.259 4.741 8 C -0.491 4.491 9 O -0.811 6.811 10 C -0.093 4.093 11 C 0.091 3.909 12 N -0.613 5.613 13 C 0.514 3.486 14 O -0.534 6.534 15 C -0.129 4.129 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.085 3.915 26 C -0.119 4.119 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.214 -17.587 17.147 34.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 O -0.275 6.275 4 C 0.335 3.665 5 O -0.372 6.372 6 C -0.471 4.471 7 S 1.454 4.546 8 C -0.649 4.649 9 O -0.806 6.806 10 C -0.132 4.132 11 C -0.032 4.032 12 N -0.348 5.348 13 C 0.304 3.696 14 O -0.410 6.410 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.039 4.039 26 C -0.158 4.158 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.790 -17.395 18.087 33.899 hybrid contribution -0.487 0.926 -3.155 3.324 sum -23.277 -16.469 14.931 32.187 Atomic orbital electron populations 1.21853 0.92421 1.03276 1.03687 1.23124 0.95421 0.79895 1.03119 1.86517 1.23969 1.32682 1.84354 1.22443 0.80630 0.90662 0.72777 1.90683 1.60297 1.42236 1.43965 1.27291 1.07008 1.00204 1.12612 1.70932 0.85688 0.94142 1.03790 1.27839 1.17984 1.09999 1.09127 1.93185 1.75170 1.33675 1.78612 1.21637 0.88905 0.98939 1.03762 1.21845 1.03329 0.90913 0.87134 1.48017 1.07246 1.58580 1.20986 1.21533 0.84047 0.77188 0.86799 1.90646 1.21236 1.58017 1.71061 1.21876 1.04025 0.99502 0.91436 1.18894 0.89752 0.96514 0.94794 1.21178 0.93874 1.36885 1.04596 0.92757 1.25027 0.95094 0.96268 0.97996 1.69994 0.99541 1.44851 1.38417 0.86648 0.77503 0.79751 0.84000 1.20264 1.21253 1.20292 1.22212 0.84118 0.94980 1.02578 1.22105 1.02627 0.97982 0.93099 0.90100 0.91175 0.91395 0.91053 0.90620 0.84786 0.87487 0.89304 0.89427 0.89265 0.88131 0.89564 0.90513 0.90352 0.95792 0.95854 0.92902 0.88417 0.88352 0.89991 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.41 10.29 37.16 0.38 -0.03 16 2 C 0.06 0.28 6.19 37.16 0.23 0.51 16 3 O -0.36 -2.22 6.60 -39.25 -0.26 -2.48 16 4 C 0.49 4.29 6.63 36.01 0.24 4.53 16 5 O -0.49 -5.65 15.77 -18.75 -0.30 -5.94 16 6 C -0.38 -3.45 0.62 -91.73 -0.06 -3.51 16 7 S 1.26 8.80 12.22 -107.50 -1.31 7.49 16 8 C -0.49 -2.57 9.68 101.05 0.98 -1.59 16 9 O -0.81 -9.93 12.28 -35.23 -0.43 -10.37 16 10 C -0.09 -1.02 4.29 -26.61 -0.11 -1.14 16 11 C 0.09 1.30 5.86 -3.71 -0.02 1.28 16 12 N -0.61 -10.30 2.97 -172.50 -0.51 -10.81 16 13 C 0.51 11.04 7.70 -10.98 -0.08 10.96 16 14 O -0.53 -13.54 15.40 5.56 0.09 -13.46 16 15 C -0.13 -2.84 3.98 -27.88 -0.11 -2.95 16 16 C 0.04 1.08 4.26 -27.89 -0.12 0.96 16 17 C -0.53 -15.50 9.11 -34.44 -0.31 -15.82 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -28.18 13.29 55.43 0.74 -27.44 16 21 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.09 1.15 5.79 -3.49 -0.02 1.13 16 26 C -0.12 -1.25 4.72 -26.38 -0.12 -1.37 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.13 0.52 5.31 -51.93 -0.28 0.25 16 33 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.09 0.56 7.03 -51.92 -0.36 0.19 16 35 H 0.09 1.14 7.99 -51.93 -0.41 0.72 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.61 7.01 -51.93 -0.36 1.25 16 38 H 0.09 1.18 5.57 -51.93 -0.29 0.90 16 39 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 40 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 41 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.10 1.34 5.22 -51.93 -0.27 1.07 16 45 H 0.10 1.32 5.93 -51.93 -0.31 1.01 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.68 6.74 -51.93 -0.35 0.33 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -39.92 377.75 -7.77 -47.68 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.21 Total: -2.19 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.77 Total: -5.41 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.22 Total: -38.25 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.90 Total: -32.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 8.80 SS G_CDS: -1.31 Total: 7.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.92 -7.77 -47.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627828676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.942 kcal (2) G-P(sol) polarization free energy of solvation -39.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds