Wall clock time and date at job start Wed Apr 1 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46932 * 2 1 4 4 C 1.34226 * 116.99921 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99943 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00251 * 179.97438 * 4 3 2 7 7 S 1.81394 * 109.44561 * 45.03467 * 6 4 3 8 8 C 1.81398 * 103.00252 * 299.96634 * 7 6 4 9 9 O 1.42101 * 109.47289 * 183.57961 * 7 6 4 10 10 C 1.53038 * 109.46273 * 164.99954 * 6 4 3 11 11 C 1.53191 * 109.31261 * 181.38667 * 10 6 4 12 12 N 1.46926 * 108.77451 * 305.36750 * 11 10 6 13 13 C 1.34780 * 120.62707 * 233.58792 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46756 * 59.99920 * 21 19 17 23 23 H 1.48490 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47117 * 300.00527 * 21 19 17 25 25 C 1.46921 * 118.74177 * 53.86188 * 12 11 10 26 26 C 1.53041 * 109.45892 * 285.07297 * 6 4 3 27 27 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47412 * 299.99950 * 1 2 3 29 29 H 1.09002 * 109.47087 * 60.00336 * 1 2 3 30 30 H 1.08989 * 109.47283 * 239.99600 * 2 1 3 31 31 H 1.09002 * 109.47087 * 119.99664 * 2 1 3 32 32 H 1.08998 * 109.47129 * 60.00204 * 8 7 6 33 33 H 1.09002 * 109.47596 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47094 * 300.00244 * 8 7 6 35 35 H 1.09002 * 109.49670 * 61.43612 * 10 6 4 36 36 H 1.08995 * 109.49620 * 301.34153 * 10 6 4 37 37 H 1.09003 * 109.58572 * 185.57865 * 11 10 6 38 38 H 1.08997 * 109.58641 * 65.15588 * 11 10 6 39 39 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 40 40 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 41 41 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 42 42 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58542 * 65.92391 * 25 12 11 45 45 H 1.08999 * 109.58977 * 186.35239 * 25 12 11 46 46 H 1.08999 * 109.49703 * 298.55915 * 26 6 4 47 47 H 1.09000 * 109.50029 * 58.65949 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 16 3.0340 3.9582 1.2092 8 6 1.3236 3.9116 0.6066 9 8 3.5205 5.2921 1.1506 10 6 5.4033 2.8761 0.3742 11 6 5.9769 4.2962 0.4064 12 7 5.7065 4.9448 -0.8839 13 6 6.7072 5.4984 -1.5972 14 8 7.8437 5.4644 -1.1752 15 6 6.4137 6.1605 -2.9188 16 6 7.7130 6.7033 -3.5170 17 6 7.4197 7.3649 -4.8388 18 1 6.4076 7.3956 -5.2144 19 6 8.4432 7.9320 -5.5681 20 7 9.6756 7.8951 -5.1104 21 14 8.0797 8.7515 -7.2069 22 1 7.1242 9.8694 -7.0002 23 1 9.3405 9.2795 -7.7868 24 1 7.4849 7.7576 -8.1362 25 6 4.3238 4.9839 -1.3789 26 6 3.7695 3.5512 -1.3938 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9719 2.8801 0.5910 33 1 0.6892 4.5023 1.2675 34 1 1.2821 4.3249 -0.4012 35 1 5.9411 2.2833 -0.3657 36 1 5.5118 2.4175 1.3570 37 1 7.0529 4.2520 0.5748 38 1 5.5027 4.8637 1.2071 39 1 5.9758 5.4318 -3.6010 40 1 5.7135 6.9818 -2.7661 41 1 8.1505 7.4321 -2.8346 42 1 8.4136 5.8824 -3.6696 43 1 10.3956 8.2944 -5.6233 44 1 3.7175 5.6064 -0.7208 45 1 4.3086 5.3935 -2.3889 46 1 4.3226 2.9520 -2.1171 47 1 2.7151 3.5731 -1.6693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627828676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:37 Heat of formation + Delta-G solvation = -177.852697 kcal Electronic energy + Delta-G solvation = -29603.762657 eV Core-core repulsion = 25491.833190 eV Total energy + Delta-G solvation = -4111.929467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95104 -41.08016 -38.79065 -37.65310 -36.81876 -35.67543 -34.43071 -33.35164 -32.42945 -32.24454 -29.53925 -28.39443 -27.14879 -24.78849 -24.34658 -23.60119 -22.65493 -21.70729 -20.23766 -19.24086 -18.96460 -18.24605 -17.96236 -17.63942 -17.27641 -17.13185 -16.70936 -16.49796 -16.25592 -15.82201 -15.24679 -15.07014 -14.78685 -14.66047 -14.48184 -14.27785 -14.22972 -14.13345 -13.78525 -13.65211 -13.48976 -13.29248 -13.26391 -12.98536 -12.83546 -12.81008 -12.78622 -12.54894 -12.35624 -12.17765 -12.01753 -12.00454 -11.63935 -11.47346 -11.42933 -11.38225 -10.99352 -10.75452 -10.60927 -9.73679 -9.25715 -8.22157 -6.37410 0.28235 1.15640 1.37824 1.40903 1.43321 1.51190 1.52776 1.60383 1.95285 2.39361 2.68164 3.10074 3.21723 3.34519 3.60643 3.73394 3.77861 4.08715 4.15910 4.17172 4.18856 4.28618 4.33864 4.38284 4.42914 4.43745 4.51469 4.55083 4.57566 4.66448 4.75046 4.89398 4.95635 4.98635 5.08063 5.08916 5.22721 5.40029 5.41311 5.50237 5.51729 5.53845 5.78328 6.11338 6.29045 6.64069 6.79651 7.16390 7.32771 8.90622 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002602 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.720736 B =10757.910417 C =11094.933956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.509 3.491 5 O -0.517 6.517 6 C -0.380 4.380 7 S 1.304 4.696 8 C -0.485 4.485 9 O -0.862 6.862 10 C -0.087 4.087 11 C 0.087 3.913 12 N -0.604 5.604 13 C 0.508 3.492 14 O -0.588 6.588 15 C -0.115 4.115 16 C 0.046 3.954 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.978 3.022 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.261 1.261 25 C 0.076 3.924 26 C -0.116 4.116 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.097 0.903 41 H -0.020 1.020 42 H -0.018 1.018 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.625 -18.364 16.847 37.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.262 6.262 4 C 0.350 3.650 5 O -0.405 6.405 6 C -0.474 4.474 7 S 1.499 4.501 8 C -0.645 4.645 9 O -0.858 6.858 10 C -0.126 4.126 11 C -0.036 4.036 12 N -0.336 5.336 13 C 0.298 3.702 14 O -0.469 6.469 15 C -0.155 4.155 16 C 0.008 3.992 17 C -0.584 4.584 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.211 1.211 24 H -0.186 1.186 25 C -0.046 4.046 26 C -0.155 4.155 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.116 0.884 41 H -0.001 1.001 42 H 0.000 1.000 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.273 -18.203 17.803 37.311 hybrid contribution 0.749 1.100 -2.972 3.256 sum -26.524 -17.103 14.832 34.871 Atomic orbital electron populations 1.21884 0.90362 1.04354 1.04228 1.23394 0.96935 0.78834 1.03103 1.86497 1.22178 1.33884 1.83653 1.22122 0.81231 0.89667 0.71963 1.90689 1.61220 1.43043 1.45524 1.27299 1.06205 1.01392 1.12470 1.70454 0.85909 0.91728 1.01994 1.27799 1.15830 1.11580 1.09274 1.93083 1.76939 1.36256 1.79491 1.21525 0.90025 0.96029 1.05000 1.22007 1.02347 0.93133 0.86095 1.48021 1.07760 1.56729 1.21137 1.21392 0.84206 0.77558 0.87022 1.90620 1.23516 1.60469 1.72265 1.21630 1.00998 1.00639 0.92241 1.18662 0.91776 0.94146 0.94598 1.21641 0.94979 1.36895 1.04888 0.90686 1.26192 0.94626 0.96841 1.02839 1.70185 1.00985 1.45977 1.40544 0.85319 0.77604 0.78937 0.78054 1.18644 1.21069 1.18561 1.22489 0.82058 0.97449 1.02643 1.22077 1.04144 0.95521 0.93710 0.88823 0.89874 0.91563 0.92048 0.89867 0.82959 0.85713 0.89527 0.91739 0.86115 0.90616 0.88407 0.88157 0.88442 1.00121 0.99997 0.92734 0.87785 0.88200 0.91303 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 10.29 71.98 0.74 0.48 16 2 C 0.05 0.34 6.19 71.98 0.45 0.79 16 3 O -0.34 -3.14 6.60 -51.38 -0.34 -3.48 16 4 C 0.51 7.67 6.63 71.24 0.47 8.14 16 5 O -0.52 -11.28 15.77 21.95 0.35 -10.93 16 6 C -0.38 -6.28 0.62 -11.51 -0.01 -6.29 16 7 S 1.30 14.87 12.22 -56.49 -0.69 14.18 16 8 C -0.49 -3.03 9.68 113.37 1.10 -1.93 16 9 O -0.86 -19.70 12.28 -148.98 -1.83 -21.52 16 10 C -0.09 -1.88 4.29 30.67 0.13 -1.75 16 11 C 0.09 2.55 5.86 86.36 0.51 3.06 16 12 N -0.60 -20.71 2.97 -818.07 -2.43 -23.14 16 13 C 0.51 22.91 7.70 87.66 0.67 23.58 16 14 O -0.59 -32.15 15.40 -3.03 -0.05 -32.20 16 15 C -0.12 -5.24 3.98 29.85 0.12 -5.12 16 16 C 0.05 2.74 4.26 29.85 0.13 2.86 16 17 C -0.55 -32.65 9.11 25.60 0.23 -32.41 16 18 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 19 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 20 N -0.94 -61.53 13.29 21.45 0.28 -61.24 16 21 Si 0.98 45.70 29.54 68.60 2.03 47.73 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.08 1.96 5.79 86.51 0.50 2.46 16 26 C -0.12 -2.21 4.72 30.82 0.15 -2.06 16 27 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 31 H 0.08 0.48 8.13 -2.39 -0.02 0.46 16 32 H 0.15 0.44 5.31 -2.39 -0.01 0.42 16 33 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.70 7.03 -2.39 -0.02 0.68 16 35 H 0.06 1.72 7.99 -2.39 -0.02 1.70 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.61 7.01 -2.39 -0.02 2.60 16 38 H 0.10 2.71 5.57 -2.39 -0.01 2.69 16 39 H 0.10 4.03 7.70 -2.39 -0.02 4.02 16 40 H 0.10 4.02 7.93 -2.39 -0.02 4.00 16 41 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 42 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 43 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 44 H 0.10 2.67 5.22 -2.39 -0.01 2.66 16 45 H 0.10 2.53 5.93 -2.39 -0.01 2.52 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.12 1.47 6.74 -2.39 -0.02 1.46 16 Total: -1.00 -92.31 377.75 3.95 -88.36 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.97 Total: 10.41 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.65 Total: -8.17 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.14 Total: -84.38 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: -1.87 Total: -68.13 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 14.87 SS G_CDS: -0.69 Total: 14.18 kcal Total: -92.31 3.95 -88.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627828676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.488 kcal (2) G-P(sol) polarization free energy of solvation -92.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds