Wall clock time and date at job start Wed Apr 1 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45212 * 109.46958 * 2 1 4 4 C 1.34224 * 117.00131 * 184.04229 * 3 2 1 5 5 O 1.20832 * 120.00066 * 3.81598 * 4 3 2 6 6 C 1.50697 * 119.99717 * 183.80760 * 4 3 2 7 7 N 1.46492 * 110.43785 * 318.08418 * 6 4 3 8 8 S 1.65602 * 120.00348 * 303.75641 * 7 6 4 9 9 O 1.42104 * 104.27739 * 311.17394 * 8 7 6 10 10 O 1.42092 * 104.27854 * 183.31689 * 8 7 6 11 11 C 1.81398 * 104.44667 * 67.24350 * 8 7 6 12 12 C 1.52999 * 109.47068 * 173.59375 * 11 8 7 13 13 C 1.50702 * 115.55116 * 32.51325 * 12 11 8 14 14 H 1.07995 * 120.00238 * 84.37589 * 13 12 11 15 15 C 1.37878 * 119.99789 * 264.38225 * 13 12 11 16 16 N 1.31515 * 119.99708 * 351.66267 * 15 13 12 17 17 Si 1.86795 * 120.00139 * 171.66542 * 15 13 12 18 18 H 1.48508 * 109.47191 * 4.99472 * 17 15 13 19 19 H 1.48496 * 109.47344 * 124.99372 * 17 15 13 20 20 H 1.48502 * 109.46985 * 244.99936 * 17 15 13 21 21 C 1.52996 * 117.50225 * 246.80147 * 12 11 8 22 22 C 1.52999 * 60.00410 * 252.51186 * 21 12 11 23 23 C 1.54892 * 110.59602 * 80.70486 * 6 4 3 24 24 C 1.54891 * 102.74667 * 156.67372 * 23 6 4 25 25 C 1.54268 * 104.19549 * 322.05334 * 24 23 6 26 26 C 1.53871 * 106.59765 * 23.61291 * 25 24 23 27 27 H 1.08998 * 109.47443 * 55.15637 * 1 2 3 28 28 H 1.09003 * 109.46648 * 175.15517 * 1 2 3 29 29 H 1.09003 * 109.47498 * 295.15372 * 1 2 3 30 30 H 1.08995 * 109.47770 * 240.00487 * 2 1 3 31 31 H 1.08999 * 109.47657 * 119.99738 * 2 1 3 32 32 H 0.97002 * 119.99860 * 123.76204 * 7 6 4 33 33 H 1.09003 * 109.47496 * 53.59275 * 11 8 7 34 34 H 1.09006 * 109.47157 * 293.59308 * 11 8 7 35 35 H 0.97005 * 119.99592 * 185.04873 * 16 15 13 36 36 H 1.09004 * 117.49615 * 359.97438 * 21 12 11 37 37 H 1.08991 * 117.50402 * 145.01849 * 21 12 11 38 38 H 1.09000 * 117.49890 * 252.51123 * 22 21 12 39 39 H 1.08998 * 117.51874 * 107.47591 * 22 21 12 40 40 H 1.08996 * 110.75290 * 274.98807 * 23 6 4 41 41 H 1.09004 * 110.75581 * 38.36152 * 23 6 4 42 42 H 1.09001 * 110.48293 * 203.37521 * 24 23 6 43 43 H 1.08995 * 110.48537 * 80.73955 * 24 23 6 44 44 H 1.08997 * 110.03099 * 264.32600 * 25 24 23 45 45 H 1.09010 * 110.02584 * 142.90014 * 25 24 23 46 46 H 1.08998 * 110.03016 * 240.70952 * 26 25 24 47 47 H 1.09003 * 110.03163 * 119.28183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3418 1.5460 -0.0843 5 8 4.0706 0.5926 -0.2251 6 6 3.9236 2.9338 -0.0035 7 7 3.1132 3.8743 -0.7811 8 16 2.8283 3.5904 -2.3876 9 8 4.1116 3.3015 -2.9253 10 8 2.0921 4.7265 -2.8191 11 6 1.7819 2.1088 -2.4067 12 6 1.3147 1.8329 -3.8373 13 6 2.2845 2.2202 -4.9238 14 1 3.0732 1.5407 -5.2110 15 6 2.1647 3.4421 -5.5512 16 7 1.1142 4.1992 -5.3212 17 14 3.4945 4.0221 -6.7279 18 1 4.5014 2.9453 -6.9068 19 1 2.8842 4.3521 -8.0408 20 1 4.1552 5.2301 -6.1715 21 6 -0.1782 1.9858 -4.1348 22 6 0.4502 0.5923 -4.0712 23 6 4.0259 3.3967 1.4711 24 6 5.1362 4.4752 1.4145 25 6 6.1541 3.9172 0.3984 26 6 5.3831 2.9372 -0.5031 27 1 -0.3634 0.5871 -0.8434 28 1 -0.3633 -1.0241 -0.0868 29 1 -0.3634 0.4368 0.9302 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7435 4.6634 -0.3551 33 1 0.9148 2.2680 -1.7657 34 1 2.3530 1.2558 -2.0401 35 1 0.9932 5.0243 -5.8168 36 1 -0.8277 2.2826 -3.3113 37 1 -0.4594 2.3668 -5.1165 38 1 0.5827 0.0565 -5.0112 39 1 0.2147 -0.0274 -3.2060 40 1 3.0834 3.8298 1.8062 41 1 4.3232 2.5697 2.1159 42 1 5.6009 4.5959 2.3930 43 1 4.7290 5.4239 1.0650 44 1 6.9543 3.3933 0.9210 45 1 6.5674 4.7292 -0.2002 46 1 5.8093 1.9376 -0.4182 47 1 5.4222 3.2734 -1.5393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645816287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:34 Heat of formation + Delta-G solvation = -125.153836 kcal Electronic energy + Delta-G solvation = -32065.110052 eV Core-core repulsion = 27955.465779 eV Total energy + Delta-G solvation = -4109.644273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95558 -38.40039 -36.71539 -36.43671 -35.88132 -34.73928 -33.16309 -32.00246 -31.55820 -28.82440 -28.23816 -28.00351 -25.41241 -23.93653 -22.16499 -21.07938 -20.76419 -20.07240 -19.48977 -18.74798 -17.74872 -17.11236 -16.77707 -16.35832 -16.12701 -15.66422 -15.15155 -14.91768 -14.39385 -14.28946 -14.04042 -13.78617 -13.43832 -13.35559 -12.93551 -12.84858 -12.43893 -12.31262 -11.97714 -11.92583 -11.75318 -11.65163 -11.44621 -11.35114 -11.23083 -11.00767 -10.95212 -10.84817 -10.77715 -10.67353 -10.53697 -10.49997 -10.39253 -10.12853 -10.03973 -9.91328 -9.55990 -9.29356 -8.89996 -8.35861 -8.08015 -6.06420 -4.22697 1.27070 2.05902 2.60297 3.34425 3.46053 3.51219 3.60140 4.30767 4.35093 4.43523 4.64274 4.87806 4.93665 4.95276 5.00450 5.06323 5.13323 5.29006 5.30223 5.33308 5.40959 5.42561 5.54238 5.58233 5.67929 5.72477 5.80142 5.86823 5.89209 6.00096 6.02208 6.07478 6.16920 6.32698 6.40448 6.45687 6.52755 6.58041 6.72020 6.74003 7.03162 7.24565 7.28803 7.66522 7.71534 7.86885 8.29738 8.87435 9.46874 10.92651 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.006511 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.548558 B = 4299.167759 C = 5823.293803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 O -0.347 6.347 4 C 0.446 3.554 5 O -0.488 6.488 6 C 0.191 3.809 7 N -1.120 6.120 8 S 2.618 3.382 9 O -0.952 6.952 10 O -0.924 6.924 11 C -0.563 4.563 12 C 0.040 3.960 13 C -0.548 4.548 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.831 5.831 17 Si 0.886 3.114 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.275 1.275 21 C -0.136 4.136 22 C -0.200 4.200 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.414 0.586 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -2.407 15.958 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 O -0.263 6.263 4 C 0.286 3.714 5 O -0.374 6.374 6 C 0.099 3.901 7 N -0.876 5.876 8 S 2.714 3.286 9 O -0.942 6.942 10 O -0.914 6.914 11 C -0.695 4.695 12 C 0.038 3.962 13 C -0.587 4.587 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.462 5.462 17 Si 0.712 3.288 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.201 1.201 21 C -0.173 4.173 22 C -0.238 4.238 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.197 4.197 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.124 -2.115 15.141 15.435 hybrid contribution -0.006 -0.192 -0.012 0.192 sum 2.118 -2.306 15.129 15.450 Atomic orbital electron populations 1.21854 0.92428 1.03171 1.03748 1.23097 0.95751 0.80196 1.02670 1.86669 1.23973 1.32533 1.83163 1.24186 0.81180 0.92865 0.73186 1.90667 1.60695 1.42599 1.43393 1.20727 0.91599 0.82307 0.95494 1.56432 1.65799 1.33531 1.31808 1.04994 0.75831 0.77226 0.70502 1.93393 1.38724 1.86327 1.75740 1.93601 1.73821 1.46919 1.77098 1.30296 1.13972 1.18907 1.06317 1.18236 0.91676 0.98147 0.88121 1.20636 1.14150 1.02616 1.21268 0.90982 1.25125 0.95886 0.96326 0.96769 1.69979 1.25427 1.12789 1.38027 0.86582 0.82424 0.79768 0.80005 1.18953 1.20818 1.20082 1.22611 0.96036 0.96393 1.02229 1.23018 1.08828 0.91455 1.00538 1.22754 1.00806 0.99737 0.91947 1.22379 0.95754 0.98233 0.99605 1.22098 0.97821 0.98839 0.96904 1.23200 0.89997 1.02229 1.04253 0.90619 0.90282 0.91692 0.90554 0.91372 0.75220 0.87078 0.88283 0.92211 0.92077 0.88223 0.90083 0.91974 0.89523 0.89826 0.90943 0.90815 0.91522 0.91138 0.89039 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.29 37.15 0.38 -1.29 16 2 C 0.06 0.73 5.67 37.15 0.21 0.94 16 3 O -0.35 -5.24 6.98 -39.24 -0.27 -5.51 16 4 C 0.45 7.34 4.45 36.00 0.16 7.50 16 5 O -0.49 -8.89 15.14 -18.75 -0.28 -9.17 16 6 C 0.19 2.87 0.86 -131.31 -0.11 2.76 16 7 N -1.12 -18.54 5.36 0.94 0.01 -18.54 16 8 S 2.62 59.32 3.93 -107.50 -0.42 58.89 16 9 O -0.95 -23.80 13.98 -57.54 -0.80 -24.61 16 10 O -0.92 -23.90 16.14 -57.54 -0.93 -24.83 16 11 C -0.56 -12.18 4.11 37.16 0.15 -12.03 16 12 C 0.04 0.99 2.04 -155.66 -0.32 0.67 16 13 C -0.55 -15.32 7.01 -34.44 -0.24 -15.56 16 14 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 15 C 0.07 1.95 4.36 -17.82 -0.08 1.88 16 16 N -0.83 -23.75 10.18 55.43 0.56 -23.19 16 17 Si 0.89 22.77 29.55 -169.99 -5.02 17.75 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 C -0.14 -3.17 8.77 -26.73 -0.23 -3.41 16 22 C -0.20 -4.32 9.95 -26.73 -0.27 -4.59 16 23 C -0.11 -1.22 5.83 -24.74 -0.14 -1.36 16 24 C -0.12 -1.20 6.79 -25.07 -0.17 -1.37 16 25 C -0.12 -1.40 6.80 -25.61 -0.17 -1.57 16 26 C -0.16 -2.48 5.73 -25.61 -0.15 -2.63 16 27 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.10 7.53 -51.93 -0.39 0.70 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.41 5.68 8.59 -34.47 -0.30 5.39 16 33 H 0.11 2.15 6.72 -51.92 -0.35 1.80 16 34 H 0.10 2.05 4.52 -51.92 -0.23 1.81 16 35 H 0.27 7.38 8.32 -40.82 -0.34 7.05 16 36 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.10 2.54 7.33 -51.93 -0.38 2.15 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.09 1.45 6.75 -51.93 -0.35 1.10 16 47 H 0.13 2.35 4.97 -51.93 -0.26 2.10 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -33.58 373.07 -9.80 -43.38 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.27 Total: 10.27 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -0.98 Total: -30.06 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.57 Total: -41.73 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -2.29 Total: -64.12 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 59.32 SS G_CDS: -0.42 Total: 58.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.58 -9.80 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645816287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.778 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds