Wall clock time and date at job start Wed Apr 1 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45212 * 109.46958 * 2 1 4 4 C 1.34224 * 117.00131 * 184.04229 * 3 2 1 5 5 O 1.20832 * 120.00066 * 3.81598 * 4 3 2 6 6 C 1.50697 * 119.99717 * 183.80760 * 4 3 2 7 7 N 1.46492 * 110.43785 * 318.08418 * 6 4 3 8 8 S 1.65602 * 120.00348 * 303.75641 * 7 6 4 9 9 O 1.42104 * 104.27739 * 311.17394 * 8 7 6 10 10 O 1.42092 * 104.27854 * 183.31689 * 8 7 6 11 11 C 1.81398 * 104.44667 * 67.24350 * 8 7 6 12 12 C 1.52999 * 109.47068 * 173.59375 * 11 8 7 13 13 C 1.50702 * 115.55116 * 32.51325 * 12 11 8 14 14 H 1.07995 * 120.00238 * 84.37589 * 13 12 11 15 15 C 1.37878 * 119.99789 * 264.38225 * 13 12 11 16 16 N 1.31515 * 119.99708 * 351.66267 * 15 13 12 17 17 Si 1.86795 * 120.00139 * 171.66542 * 15 13 12 18 18 H 1.48508 * 109.47191 * 4.99472 * 17 15 13 19 19 H 1.48496 * 109.47344 * 124.99372 * 17 15 13 20 20 H 1.48502 * 109.46985 * 244.99936 * 17 15 13 21 21 C 1.52996 * 117.50225 * 246.80147 * 12 11 8 22 22 C 1.52999 * 60.00410 * 252.51186 * 21 12 11 23 23 C 1.54892 * 110.59602 * 80.70486 * 6 4 3 24 24 C 1.54891 * 102.74667 * 156.67372 * 23 6 4 25 25 C 1.54268 * 104.19549 * 322.05334 * 24 23 6 26 26 C 1.53871 * 106.59765 * 23.61291 * 25 24 23 27 27 H 1.08998 * 109.47443 * 55.15637 * 1 2 3 28 28 H 1.09003 * 109.46648 * 175.15517 * 1 2 3 29 29 H 1.09003 * 109.47498 * 295.15372 * 1 2 3 30 30 H 1.08995 * 109.47770 * 240.00487 * 2 1 3 31 31 H 1.08999 * 109.47657 * 119.99738 * 2 1 3 32 32 H 0.97002 * 119.99860 * 123.76204 * 7 6 4 33 33 H 1.09003 * 109.47496 * 53.59275 * 11 8 7 34 34 H 1.09006 * 109.47157 * 293.59308 * 11 8 7 35 35 H 0.97005 * 119.99592 * 185.04873 * 16 15 13 36 36 H 1.09004 * 117.49615 * 359.97438 * 21 12 11 37 37 H 1.08991 * 117.50402 * 145.01849 * 21 12 11 38 38 H 1.09000 * 117.49890 * 252.51123 * 22 21 12 39 39 H 1.08998 * 117.51874 * 107.47591 * 22 21 12 40 40 H 1.08996 * 110.75290 * 274.98807 * 23 6 4 41 41 H 1.09004 * 110.75581 * 38.36152 * 23 6 4 42 42 H 1.09001 * 110.48293 * 203.37521 * 24 23 6 43 43 H 1.08995 * 110.48537 * 80.73955 * 24 23 6 44 44 H 1.08997 * 110.03099 * 264.32600 * 25 24 23 45 45 H 1.09010 * 110.02584 * 142.90014 * 25 24 23 46 46 H 1.08998 * 110.03016 * 240.70952 * 26 25 24 47 47 H 1.09003 * 110.03163 * 119.28183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3418 1.5460 -0.0843 5 8 4.0706 0.5926 -0.2251 6 6 3.9236 2.9338 -0.0035 7 7 3.1132 3.8743 -0.7811 8 16 2.8283 3.5904 -2.3876 9 8 4.1116 3.3015 -2.9253 10 8 2.0921 4.7265 -2.8191 11 6 1.7819 2.1088 -2.4067 12 6 1.3147 1.8329 -3.8373 13 6 2.2845 2.2202 -4.9238 14 1 3.0732 1.5407 -5.2110 15 6 2.1647 3.4421 -5.5512 16 7 1.1142 4.1992 -5.3212 17 14 3.4945 4.0221 -6.7279 18 1 4.5014 2.9453 -6.9068 19 1 2.8842 4.3521 -8.0408 20 1 4.1552 5.2301 -6.1715 21 6 -0.1782 1.9858 -4.1348 22 6 0.4502 0.5923 -4.0712 23 6 4.0259 3.3967 1.4711 24 6 5.1362 4.4752 1.4145 25 6 6.1541 3.9172 0.3984 26 6 5.3831 2.9372 -0.5031 27 1 -0.3634 0.5871 -0.8434 28 1 -0.3633 -1.0241 -0.0868 29 1 -0.3634 0.4368 0.9302 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7435 4.6634 -0.3551 33 1 0.9148 2.2680 -1.7657 34 1 2.3530 1.2558 -2.0401 35 1 0.9932 5.0243 -5.8168 36 1 -0.8277 2.2826 -3.3113 37 1 -0.4594 2.3668 -5.1165 38 1 0.5827 0.0565 -5.0112 39 1 0.2147 -0.0274 -3.2060 40 1 3.0834 3.8298 1.8062 41 1 4.3232 2.5697 2.1159 42 1 5.6009 4.5959 2.3930 43 1 4.7290 5.4239 1.0650 44 1 6.9543 3.3933 0.9210 45 1 6.5674 4.7292 -0.2002 46 1 5.8093 1.9376 -0.4182 47 1 5.4222 3.2734 -1.5393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645816287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:33 Heat of formation + Delta-G solvation = -147.537667 kcal Electronic energy + Delta-G solvation = -32066.080688 eV Core-core repulsion = 27955.465779 eV Total energy + Delta-G solvation = -4110.614909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17248 -39.51687 -38.52731 -37.75645 -37.69219 -36.60661 -34.41757 -34.04282 -32.55360 -30.00421 -29.79572 -29.15940 -27.51841 -24.96307 -23.20983 -22.88147 -21.73346 -21.58697 -21.07896 -20.28253 -19.13235 -18.62914 -18.26901 -18.01093 -17.47321 -17.10742 -16.74939 -16.29801 -16.28052 -15.84563 -15.29092 -15.17497 -14.88091 -14.79259 -14.28932 -14.09497 -13.75590 -13.66538 -13.56914 -13.21689 -13.06849 -12.99813 -12.92472 -12.81534 -12.74455 -12.66604 -12.51037 -12.42989 -12.26986 -12.09776 -11.98757 -11.90092 -11.76240 -11.62950 -11.60783 -11.36146 -11.23028 -11.01379 -10.61515 -10.33126 -9.93539 -8.21674 -6.39976 -0.46146 0.79829 1.25485 1.34498 1.42470 1.46856 2.07540 2.32873 2.99375 3.04628 3.24115 3.32529 3.41472 3.59253 3.64465 3.87337 4.01249 4.06377 4.10617 4.24734 4.32647 4.36240 4.38432 4.49170 4.51534 4.62125 4.67383 4.72128 4.76111 4.83169 4.90513 4.95541 4.99447 5.06483 5.11523 5.12985 5.18078 5.28033 5.33311 5.39534 5.45378 5.50785 5.66409 5.78790 6.07134 6.25771 6.49088 6.68293 7.30191 8.76184 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.006511 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.548558 B = 4299.167759 C = 5823.293803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.348 6.348 4 C 0.442 3.558 5 O -0.513 6.513 6 C 0.181 3.819 7 N -1.101 6.101 8 S 2.618 3.382 9 O -0.987 6.987 10 O -0.965 6.965 11 C -0.549 4.549 12 C 0.003 3.997 13 C -0.561 4.561 14 H 0.051 0.949 15 C 0.037 3.963 16 N -0.845 5.845 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.260 1.260 20 H -0.283 1.283 21 C -0.136 4.136 22 C -0.175 4.175 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.429 0.571 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -2.829 18.867 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.264 6.264 4 C 0.283 3.717 5 O -0.401 6.401 6 C 0.089 3.911 7 N -0.862 5.862 8 S 2.716 3.284 9 O -0.977 6.977 10 O -0.955 6.955 11 C -0.682 4.682 12 C 0.001 3.999 13 C -0.600 4.600 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.477 5.477 17 Si 0.733 3.267 18 H -0.191 1.191 19 H -0.184 1.184 20 H -0.209 1.209 21 C -0.173 4.173 22 C -0.213 4.213 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.206 4.206 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.266 0.734 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.379 -2.519 18.030 18.258 hybrid contribution 0.251 -0.164 -0.875 0.925 sum 1.630 -2.683 17.155 17.440 Atomic orbital electron populations 1.21899 0.90424 1.04534 1.03948 1.23402 0.97318 0.79171 1.02840 1.86656 1.23113 1.33947 1.82682 1.24464 0.81531 0.93100 0.72571 1.90655 1.61304 1.43444 1.44651 1.21048 0.90465 0.81456 0.98114 1.55771 1.65926 1.34486 1.30027 1.04592 0.75174 0.76981 0.71683 1.93373 1.40149 1.86646 1.77505 1.93544 1.74419 1.48582 1.78933 1.30139 1.14625 1.18413 1.04982 1.18364 0.91805 1.01038 0.88658 1.20755 1.14427 1.02384 1.22403 0.93068 1.25544 0.96961 0.96620 0.97948 1.70023 1.26119 1.12895 1.38706 0.86229 0.81300 0.79037 0.80114 1.19083 1.18434 1.20946 1.22525 0.95406 0.97783 1.01627 1.23047 1.05779 0.90747 1.01734 1.22881 1.02449 1.00587 0.88530 1.22429 0.94830 0.97741 1.00479 1.22133 0.98550 0.97998 0.96912 1.23190 0.91477 1.02757 1.03195 0.92203 0.88021 0.89995 0.92307 0.89423 0.73402 0.84653 0.87568 0.92353 0.89999 0.90822 0.90554 0.88320 0.87209 0.88143 0.87709 0.90553 0.89566 0.91562 0.89916 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.29 71.98 0.74 -2.01 16 2 C 0.05 1.08 5.67 71.98 0.41 1.49 16 3 O -0.35 -9.75 6.98 -51.36 -0.36 -10.11 16 4 C 0.44 13.98 4.45 71.23 0.32 14.30 16 5 O -0.51 -18.45 15.14 21.95 0.33 -18.12 16 6 C 0.18 5.19 0.86 3.93 0.00 5.19 16 7 N -1.10 -35.50 5.36 -150.92 -0.81 -36.31 16 8 S 2.62 120.00 3.93 -56.49 -0.22 119.78 16 9 O -0.99 -51.28 13.98 -127.65 -1.78 -53.07 16 10 O -0.96 -50.73 16.14 -127.65 -2.06 -52.79 16 11 C -0.55 -23.40 4.11 71.98 0.30 -23.10 16 12 C 0.00 0.16 2.04 -52.93 -0.11 0.05 16 13 C -0.56 -32.09 7.01 25.60 0.18 -31.91 16 14 H 0.05 3.05 7.83 -2.91 -0.02 3.03 16 15 C 0.04 2.16 4.36 84.65 0.37 2.53 16 16 N -0.85 -49.22 10.18 21.45 0.22 -49.01 16 17 Si 0.91 47.09 29.55 68.60 2.03 49.12 16 18 H -0.27 -13.71 7.11 99.48 0.71 -13.01 16 19 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -14.97 7.11 99.48 0.71 -14.26 16 21 C -0.14 -6.27 8.77 30.59 0.27 -6.00 16 22 C -0.17 -7.29 9.95 30.60 0.30 -6.98 16 23 C -0.11 -1.90 5.83 31.89 0.19 -1.71 16 24 C -0.12 -1.89 6.79 31.67 0.22 -1.67 16 25 C -0.12 -2.59 6.80 31.32 0.21 -2.37 16 26 C -0.17 -5.25 5.73 31.32 0.18 -5.07 16 27 H 0.06 1.30 7.78 -2.39 -0.02 1.28 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.60 7.53 -2.39 -0.02 1.58 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.43 11.10 8.59 -96.74 -0.83 10.27 16 33 H 0.14 5.00 6.72 -2.39 -0.02 4.98 16 34 H 0.11 4.34 4.52 -2.39 -0.01 4.33 16 35 H 0.27 15.02 8.32 -92.70 -0.77 14.25 16 36 H 0.08 3.37 8.04 -2.38 -0.02 3.35 16 37 H 0.07 3.77 7.33 -2.39 -0.02 3.76 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.11 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.10 1.53 8.05 -2.38 -0.02 1.51 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.08 2.67 6.75 -2.39 -0.02 2.66 16 47 H 0.09 3.46 4.97 -2.39 -0.01 3.45 16 Total: -1.00 -75.84 373.07 1.07 -74.77 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.15 Total: 33.03 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 3.57 Total: -57.29 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -0.59 Total: -85.32 kcal Atomic # 8 Polarization: -130.22 SS G_CDS: -3.87 Total: -134.09 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Atomic # 16 Polarization: 120.00 SS G_CDS: -0.22 Total: 119.78 kcal Total: -75.84 1.07 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645816287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.771 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds