Wall clock time and date at job start Wed Apr 1 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46143 * 119.52100 * 2 1 4 4 C 1.52663 * 110.91473 * 139.58341 * 3 2 1 5 5 H 1.09003 * 109.35362 * 290.44968 * 4 3 2 6 6 C 1.50700 * 109.36011 * 170.86305 * 4 3 2 7 7 O 1.20822 * 119.99791 * 322.80680 * 6 4 3 8 8 O 1.34226 * 119.99975 * 142.80785 * 6 4 3 9 9 C 1.45207 * 116.99962 * 174.87669 * 8 6 4 10 10 C 1.52996 * 109.47130 * 182.70215 * 9 8 6 11 11 C 1.50704 * 112.99806 * 299.68746 * 10 9 8 12 12 H 1.08007 * 119.99843 * 114.87106 * 11 10 9 13 13 C 1.37875 * 120.00119 * 294.86629 * 11 10 9 14 14 N 1.31512 * 119.99958 * 354.86913 * 13 11 10 15 15 Si 1.86806 * 119.99920 * 174.86749 * 13 11 10 16 16 H 1.48498 * 109.47014 * 59.99990 * 15 13 11 17 17 H 1.48497 * 109.47069 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47054 * 300.00270 * 15 13 11 19 19 C 1.54029 * 113.81606 * 167.86543 * 10 9 8 20 20 O 1.44451 * 85.42376 * 223.23508 * 19 10 9 21 21 C 1.44172 * 93.37923 * 24.08960 * 20 19 10 22 22 C 1.50576 * 110.14476 * 50.65342 * 4 3 2 23 23 C 1.37839 * 120.68046 * 147.91854 * 22 4 3 24 24 C 1.38406 * 119.99619 * 179.23755 * 23 22 4 25 25 C 1.38380 * 120.41132 * 359.50376 * 24 23 22 26 26 C 1.38068 * 120.14008 * 0.55162 * 25 24 23 27 27 C 1.39241 * 119.66941 * 359.97438 * 26 25 24 28 28 C 1.34671 * 119.52205 * 180.02562 * 2 1 3 29 29 O 1.21549 * 120.33256 * 7.58986 * 28 2 1 30 30 H 1.09008 * 109.46688 * 89.99929 * 1 2 3 31 31 H 1.08992 * 109.47457 * 209.99682 * 1 2 3 32 32 H 1.09000 * 109.47027 * 330.00383 * 1 2 3 33 33 H 1.09008 * 109.18896 * 19.21330 * 3 2 1 34 34 H 1.08997 * 109.19212 * 259.95441 * 3 2 1 35 35 H 1.08995 * 109.46620 * 302.70373 * 9 8 6 36 36 H 1.09001 * 109.46977 * 62.70510 * 9 8 6 37 37 H 0.97001 * 119.99684 * 185.03796 * 14 13 11 38 38 H 1.09003 * 113.86594 * 337.33751 * 19 10 9 39 39 H 1.09005 * 113.86726 * 109.04775 * 19 10 9 40 40 H 1.09002 * 113.86187 * 221.76685 * 21 20 19 41 41 H 1.08992 * 113.98689 * 90.07671 * 21 20 19 42 42 H 1.08000 * 119.99922 * 358.98329 * 23 22 4 43 43 H 1.08001 * 119.79457 * 179.77808 * 24 23 22 44 44 H 1.07997 * 119.93946 * 180.57779 * 25 24 23 45 45 H 1.07993 * 120.16669 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1851 1.2717 0.0000 4 6 3.3984 1.2109 0.9246 5 1 3.0615 1.1642 1.9601 6 6 4.2370 2.4479 0.7303 7 8 4.3637 2.9248 -0.3726 8 8 4.8430 3.0200 1.7826 9 6 5.7258 4.1393 1.5065 10 6 6.3720 4.6127 2.8101 11 6 5.3654 5.0731 3.8328 12 1 5.2504 4.5305 4.7596 13 6 4.5915 6.1870 3.5856 14 7 4.8005 6.9062 2.5045 15 14 3.2460 6.6747 4.7861 16 1 3.8446 6.9424 6.1185 17 1 2.5646 7.8994 4.2951 18 1 2.2596 5.5705 4.8994 19 6 7.5422 5.5928 2.6041 20 8 8.2162 4.8209 3.6221 21 6 7.4276 3.6407 3.3699 22 6 4.2268 -0.0075 0.6137 23 6 5.5954 0.0124 0.7759 24 6 6.3413 -1.1206 0.5011 25 6 5.7208 -2.2809 0.0728 26 6 4.3507 -2.3132 -0.0947 27 6 3.5970 -1.1727 0.1701 28 6 2.1286 -1.1719 -0.0005 29 8 1.5262 -2.2184 -0.1396 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.5157 2.0625 0.3388 34 1 2.5179 1.4950 -1.0136 35 1 6.5024 3.8259 0.8089 36 1 5.1515 4.9555 1.0683 37 1 4.3066 7.7296 2.3668 38 1 8.0061 5.5252 1.6200 39 1 7.3173 6.6170 2.9019 40 1 7.1120 3.1198 4.2739 41 1 7.8547 2.9741 2.6207 42 1 6.0861 0.9133 1.1136 43 1 7.4139 -1.1003 0.6258 44 1 6.3093 -3.1633 -0.1306 45 1 3.8660 -3.2183 -0.4293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646888728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:31 Heat of formation + Delta-G solvation = -95.386024 kcal Electronic energy + Delta-G solvation = -30945.055769 eV Core-core repulsion = 26701.258374 eV Total energy + Delta-G solvation = -4243.797396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28970 -39.91572 -39.15006 -38.43513 -36.62720 -35.75607 -33.25654 -32.96740 -31.46078 -30.11712 -29.58513 -27.49040 -25.73807 -25.44343 -24.89857 -24.04776 -23.30413 -22.47939 -20.27903 -19.18220 -18.99527 -18.12271 -17.33135 -16.94642 -16.61539 -16.11045 -15.85967 -15.58169 -15.38300 -15.00545 -14.73264 -14.66962 -14.47405 -14.38447 -14.06916 -13.77728 -13.67407 -13.54622 -13.03220 -12.70449 -12.59290 -12.35963 -12.28915 -12.09288 -11.96655 -11.75872 -11.58063 -11.24767 -11.04099 -10.88026 -10.56269 -10.40095 -10.11679 -10.06557 -9.72168 -9.51528 -9.22667 -9.16876 -9.06880 -8.83758 -8.81999 -8.41766 -6.24974 -4.30025 0.61550 1.11296 2.38488 2.62125 2.62989 3.17797 3.21277 3.26492 3.29225 3.64344 4.21883 4.24223 4.26080 4.33824 4.74083 4.79597 4.82860 4.90763 5.04226 5.08351 5.10474 5.11945 5.22869 5.28417 5.34266 5.51543 5.58645 5.65485 5.76970 5.84561 5.92259 6.04640 6.06937 6.13411 6.17944 6.20139 6.24237 6.27712 6.44572 6.64695 6.84750 7.01227 7.04374 7.17162 7.19143 7.27481 7.70870 7.89230 8.06432 8.21000 8.67610 9.34431 10.82054 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003703 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.624250 B = 7560.497278 C = 9116.509873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.612 5.612 3 C 0.127 3.873 4 C -0.064 4.064 5 H 0.126 0.874 6 C 0.467 3.533 7 O -0.508 6.508 8 O -0.327 6.327 9 C 0.080 3.920 10 C 0.034 3.966 11 C -0.488 4.488 12 H 0.066 0.934 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.051 3.949 20 O -0.388 6.388 21 C 0.029 3.971 22 C -0.036 4.036 23 C -0.117 4.117 24 C -0.084 4.084 25 C -0.129 4.129 26 C -0.056 4.056 27 C -0.131 4.131 28 C 0.565 3.435 29 O -0.534 6.534 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.267 0.733 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -13.391 -5.523 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.345 5.345 3 C 0.003 3.997 4 C -0.084 4.084 5 H 0.144 0.856 6 C 0.308 3.692 7 O -0.397 6.397 8 O -0.242 6.242 9 C 0.007 3.993 10 C 0.033 3.967 11 C -0.526 4.526 12 H 0.084 0.916 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.026 4.026 20 O -0.307 6.307 21 C -0.048 4.048 22 C -0.037 4.037 23 C -0.135 4.135 24 C -0.102 4.102 25 C -0.147 4.147 26 C -0.075 4.075 27 C -0.134 4.134 28 C 0.354 3.646 29 O -0.412 6.412 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.822 -13.526 -5.844 15.002 hybrid contribution -0.743 0.648 0.384 1.058 sum -3.564 -12.877 -5.460 14.434 Atomic orbital electron populations 1.21744 0.78121 1.03468 1.02306 1.47469 1.07399 1.05663 1.73928 1.21300 0.92246 0.85452 1.00663 1.20095 0.94543 0.89658 1.04101 0.85588 1.22695 0.78915 0.84005 0.83578 1.90645 1.60030 1.62683 1.26359 1.86551 1.55821 1.46173 1.35628 1.23610 0.90536 0.85290 0.99908 1.21104 0.92607 0.90849 0.92123 1.20552 1.17526 1.12181 1.02306 0.91576 1.24961 0.97029 0.96227 0.95359 1.69841 1.42139 1.14574 1.26141 0.86537 0.81848 0.77887 0.81148 1.20034 1.21188 1.20030 1.23954 0.90363 0.98926 0.89367 1.89544 1.60842 1.24527 1.55796 1.24037 0.91327 0.89850 0.99554 1.19488 0.93943 0.92592 0.97708 1.21113 0.92729 0.99589 1.00064 1.21382 1.00444 0.92376 0.96044 1.21203 0.94307 0.98554 1.00637 1.21127 0.93545 0.96980 0.95825 1.19584 0.93041 0.94785 1.05991 1.18173 0.87190 0.83143 0.76046 1.90752 1.69781 1.31172 1.49452 0.92305 0.90362 0.90644 0.88298 0.89385 0.94347 0.89035 0.92363 0.93397 0.88269 0.90346 0.92962 0.84924 0.85040 0.85028 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.37 59.85 0.62 1.43 16 2 N -0.61 -7.42 3.19 -183.23 -0.58 -8.00 16 3 C 0.13 1.53 5.60 -4.41 -0.02 1.51 16 4 C -0.06 -0.88 2.96 -93.16 -0.28 -1.15 16 5 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 6 C 0.47 8.03 5.40 36.01 0.19 8.22 16 7 O -0.51 -9.82 15.87 -18.75 -0.30 -10.11 16 8 O -0.33 -6.40 9.65 -39.25 -0.38 -6.78 16 9 C 0.08 1.71 4.63 37.16 0.17 1.88 16 10 C 0.03 0.76 0.57 -154.58 -0.09 0.67 16 11 C -0.49 -12.23 8.08 -34.44 -0.28 -12.51 16 12 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.07 1.69 5.25 -17.82 -0.09 1.59 16 14 N -0.89 -22.95 11.23 55.43 0.62 -22.32 16 15 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.05 1.14 7.94 37.64 0.30 1.43 16 20 O -0.39 -8.79 12.41 -35.23 -0.44 -9.23 16 21 C 0.03 0.59 8.35 37.64 0.31 0.91 16 22 C -0.04 -0.49 5.51 -104.29 -0.57 -1.06 16 23 C -0.12 -1.50 9.17 -39.67 -0.36 -1.87 16 24 C -0.08 -0.88 10.04 -39.47 -0.40 -1.28 16 25 C -0.13 -1.26 10.04 -39.59 -0.40 -1.65 16 26 C -0.06 -0.64 9.63 -39.27 -0.38 -1.02 16 27 C -0.13 -1.74 5.79 -105.06 -0.61 -2.34 16 28 C 0.56 7.94 7.50 -12.39 -0.09 7.85 16 29 O -0.53 -8.61 16.19 5.32 0.09 -8.52 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.78 7.52 -51.93 -0.39 0.39 16 32 H 0.07 0.55 7.80 -51.93 -0.40 0.15 16 33 H 0.10 1.03 7.73 -51.92 -0.40 0.63 16 34 H 0.09 1.14 7.50 -51.93 -0.39 0.75 16 35 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.09 2.21 7.00 -51.93 -0.36 1.85 16 37 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 38 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.10 2.40 7.44 -51.93 -0.39 2.01 16 40 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 41 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.13 1.80 6.72 -52.49 -0.35 1.45 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.14 1.44 7.79 -52.49 -0.41 1.03 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -30.02 376.64 -8.32 -38.34 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.02 Total: 3.42 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.97 Total: 2.61 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.04 Total: -30.32 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.03 Total: -34.64 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.02 -8.32 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646888728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.045 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds