Wall clock time and date at job start Wed Apr 1 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46143 * 119.52100 * 2 1 4 4 C 1.52663 * 110.91473 * 139.58341 * 3 2 1 5 5 H 1.09003 * 109.35362 * 290.44968 * 4 3 2 6 6 C 1.50700 * 109.36011 * 170.86305 * 4 3 2 7 7 O 1.20822 * 119.99791 * 322.80680 * 6 4 3 8 8 O 1.34226 * 119.99975 * 142.80785 * 6 4 3 9 9 C 1.45207 * 116.99962 * 174.87669 * 8 6 4 10 10 C 1.52996 * 109.47130 * 182.70215 * 9 8 6 11 11 C 1.50704 * 112.99806 * 299.68746 * 10 9 8 12 12 H 1.08007 * 119.99843 * 114.87106 * 11 10 9 13 13 C 1.37875 * 120.00119 * 294.86629 * 11 10 9 14 14 N 1.31512 * 119.99958 * 354.86913 * 13 11 10 15 15 Si 1.86806 * 119.99920 * 174.86749 * 13 11 10 16 16 H 1.48498 * 109.47014 * 59.99990 * 15 13 11 17 17 H 1.48497 * 109.47069 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47054 * 300.00270 * 15 13 11 19 19 C 1.54029 * 113.81606 * 167.86543 * 10 9 8 20 20 O 1.44451 * 85.42376 * 223.23508 * 19 10 9 21 21 C 1.44172 * 93.37923 * 24.08960 * 20 19 10 22 22 C 1.50576 * 110.14476 * 50.65342 * 4 3 2 23 23 C 1.37839 * 120.68046 * 147.91854 * 22 4 3 24 24 C 1.38406 * 119.99619 * 179.23755 * 23 22 4 25 25 C 1.38380 * 120.41132 * 359.50376 * 24 23 22 26 26 C 1.38068 * 120.14008 * 0.55162 * 25 24 23 27 27 C 1.39241 * 119.66941 * 359.97438 * 26 25 24 28 28 C 1.34671 * 119.52205 * 180.02562 * 2 1 3 29 29 O 1.21549 * 120.33256 * 7.58986 * 28 2 1 30 30 H 1.09008 * 109.46688 * 89.99929 * 1 2 3 31 31 H 1.08992 * 109.47457 * 209.99682 * 1 2 3 32 32 H 1.09000 * 109.47027 * 330.00383 * 1 2 3 33 33 H 1.09008 * 109.18896 * 19.21330 * 3 2 1 34 34 H 1.08997 * 109.19212 * 259.95441 * 3 2 1 35 35 H 1.08995 * 109.46620 * 302.70373 * 9 8 6 36 36 H 1.09001 * 109.46977 * 62.70510 * 9 8 6 37 37 H 0.97001 * 119.99684 * 185.03796 * 14 13 11 38 38 H 1.09003 * 113.86594 * 337.33751 * 19 10 9 39 39 H 1.09005 * 113.86726 * 109.04775 * 19 10 9 40 40 H 1.09002 * 113.86187 * 221.76685 * 21 20 19 41 41 H 1.08992 * 113.98689 * 90.07671 * 21 20 19 42 42 H 1.08000 * 119.99922 * 358.98329 * 23 22 4 43 43 H 1.08001 * 119.79457 * 179.77808 * 24 23 22 44 44 H 1.07997 * 119.93946 * 180.57779 * 25 24 23 45 45 H 1.07993 * 120.16669 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1851 1.2717 0.0000 4 6 3.3984 1.2109 0.9246 5 1 3.0615 1.1642 1.9601 6 6 4.2370 2.4479 0.7303 7 8 4.3637 2.9248 -0.3726 8 8 4.8430 3.0200 1.7826 9 6 5.7258 4.1393 1.5065 10 6 6.3720 4.6127 2.8101 11 6 5.3654 5.0731 3.8328 12 1 5.2504 4.5305 4.7596 13 6 4.5915 6.1870 3.5856 14 7 4.8005 6.9062 2.5045 15 14 3.2460 6.6747 4.7861 16 1 3.8446 6.9424 6.1185 17 1 2.5646 7.8994 4.2951 18 1 2.2596 5.5705 4.8994 19 6 7.5422 5.5928 2.6041 20 8 8.2162 4.8209 3.6221 21 6 7.4276 3.6407 3.3699 22 6 4.2268 -0.0075 0.6137 23 6 5.5954 0.0124 0.7759 24 6 6.3413 -1.1206 0.5011 25 6 5.7208 -2.2809 0.0728 26 6 4.3507 -2.3132 -0.0947 27 6 3.5970 -1.1727 0.1701 28 6 2.1286 -1.1719 -0.0005 29 8 1.5262 -2.2184 -0.1396 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.5157 2.0625 0.3388 34 1 2.5179 1.4950 -1.0136 35 1 6.5024 3.8259 0.8089 36 1 5.1515 4.9555 1.0683 37 1 4.3066 7.7296 2.3668 38 1 8.0061 5.5252 1.6200 39 1 7.3173 6.6170 2.9019 40 1 7.1120 3.1198 4.2739 41 1 7.8547 2.9741 2.6207 42 1 6.0861 0.9133 1.1136 43 1 7.4139 -1.1003 0.6258 44 1 6.3093 -3.1633 -0.1306 45 1 3.8660 -3.2183 -0.4293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646888728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:31 Heat of formation + Delta-G solvation = -112.129135 kcal Electronic energy + Delta-G solvation = -30945.781805 eV Core-core repulsion = 26701.258374 eV Total energy + Delta-G solvation = -4244.523431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39843 -41.35205 -40.73777 -39.39787 -37.83489 -37.12793 -34.89964 -34.18813 -32.38738 -31.80945 -30.60712 -28.38502 -27.39445 -27.11506 -26.41831 -25.40732 -24.19289 -23.58524 -21.55665 -20.87870 -20.03518 -19.21383 -18.61830 -18.37849 -17.85853 -17.47396 -17.25307 -16.97035 -16.64602 -16.34704 -16.16421 -16.14418 -15.91233 -15.60381 -15.43182 -14.85004 -14.62932 -14.57189 -14.36281 -13.93166 -13.86040 -13.70003 -13.50241 -13.43811 -13.11043 -12.91875 -12.82592 -12.65233 -12.55179 -12.34463 -12.17432 -11.93504 -11.76488 -11.36848 -11.28635 -11.14216 -10.89890 -10.66396 -10.21497 -10.17474 -9.99534 -9.75706 -8.16079 -6.25842 -0.31193 0.21316 1.05328 1.43988 1.45519 1.47572 1.52058 1.64009 1.99113 2.41820 2.72377 3.01881 3.20430 3.23756 3.27167 3.27966 3.68522 3.83404 3.90543 4.07463 4.16451 4.23487 4.26087 4.32227 4.34253 4.45663 4.48185 4.49273 4.51497 4.59601 4.64806 4.69764 4.78363 4.85324 4.88692 5.14956 5.17326 5.23775 5.26215 5.31873 5.38838 5.49062 5.53259 5.61832 5.75380 5.80966 6.04724 6.24180 6.71376 6.74936 6.87246 7.40424 8.89240 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003703 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.624250 B = 7560.497278 C = 9116.509873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.130 3.870 4 C -0.057 4.057 5 H 0.134 0.866 6 C 0.472 3.528 7 O -0.531 6.531 8 O -0.335 6.335 9 C 0.093 3.907 10 C 0.019 3.981 11 C -0.502 4.502 12 H 0.058 0.942 13 C 0.028 3.972 14 N -0.909 5.909 15 Si 0.948 3.052 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.054 3.946 20 O -0.405 6.405 21 C 0.039 3.961 22 C -0.050 4.050 23 C -0.135 4.135 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.061 4.061 27 C -0.148 4.148 28 C 0.559 3.441 29 O -0.562 6.562 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 -14.996 -5.545 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C 0.007 3.993 4 C -0.076 4.076 5 H 0.152 0.848 6 C 0.315 3.685 7 O -0.421 6.421 8 O -0.250 6.250 9 C 0.019 3.981 10 C 0.018 3.982 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.173 4.173 14 N -0.547 5.547 15 Si 0.774 3.226 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.023 4.023 20 O -0.324 6.324 21 C -0.037 4.037 22 C -0.051 4.051 23 C -0.153 4.153 24 C -0.097 4.097 25 C -0.135 4.135 26 C -0.080 4.080 27 C -0.151 4.151 28 C 0.349 3.651 29 O -0.443 6.443 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.177 0.823 44 H 0.185 0.815 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.545 -15.126 -5.861 16.420 hybrid contribution -0.790 1.094 0.365 1.398 sum -3.335 -14.032 -5.496 15.435 Atomic orbital electron populations 1.21943 0.76541 1.04392 1.03192 1.47545 1.08434 1.05089 1.72975 1.21287 0.92144 0.85952 0.99897 1.20112 0.94508 0.88008 1.05011 0.84799 1.23273 0.78306 0.84270 0.82653 1.90632 1.60853 1.63531 1.27094 1.86548 1.56042 1.45675 1.36739 1.23226 0.90586 0.85049 0.99202 1.21145 0.92761 0.91964 0.92301 1.20782 1.18333 1.12231 1.02606 0.92408 1.25548 0.98628 0.96418 0.96676 1.69937 1.42826 1.14697 1.27221 0.85758 0.79845 0.77602 0.79394 1.20062 1.21133 1.19467 1.23874 0.90674 0.97626 0.90149 1.89515 1.61151 1.25563 1.56190 1.24143 0.89847 0.89318 1.00410 1.19466 0.94316 0.92408 0.98900 1.21191 0.92679 1.00281 1.01101 1.21729 1.01760 0.91588 0.94593 1.21587 0.93701 0.99461 0.98712 1.21378 0.94465 0.96643 0.95472 1.19657 0.92805 0.95494 1.07173 1.18408 0.87692 0.83243 0.75758 1.90727 1.70369 1.32048 1.51121 0.91447 0.90937 0.88221 0.86441 0.90254 0.92880 0.92314 0.92634 0.91190 0.90820 0.89882 0.89797 0.85987 0.82265 0.81470 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.37 127.77 1.33 2.74 16 2 N -0.61 -14.20 3.19 -851.94 -2.71 -16.92 16 3 C 0.13 3.04 5.60 86.33 0.48 3.53 16 4 C -0.06 -1.51 2.96 -12.44 -0.04 -1.55 16 5 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 6 C 0.47 16.07 5.40 71.24 0.38 16.46 16 7 O -0.53 -20.51 15.87 21.98 0.35 -20.17 16 8 O -0.34 -12.99 9.65 -51.38 -0.50 -13.49 16 9 C 0.09 3.96 4.63 71.98 0.33 4.30 16 10 C 0.02 0.85 0.57 -52.23 -0.03 0.82 16 11 C -0.50 -25.21 8.08 25.60 0.21 -25.01 16 12 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 13 C 0.03 1.40 5.25 84.65 0.44 1.85 16 14 N -0.91 -47.54 11.23 21.45 0.24 -47.30 16 15 Si 0.95 40.87 29.54 68.60 2.03 42.89 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C 0.05 2.39 7.94 72.29 0.57 2.96 16 20 O -0.40 -17.96 12.41 -148.98 -1.85 -19.81 16 21 C 0.04 1.52 8.35 72.30 0.60 2.13 16 22 C -0.05 -1.30 5.51 -19.65 -0.11 -1.41 16 23 C -0.13 -3.26 9.17 22.21 0.20 -3.05 16 24 C -0.08 -1.42 10.04 22.34 0.22 -1.20 16 25 C -0.12 -1.90 10.04 22.26 0.22 -1.68 16 26 C -0.06 -1.28 9.63 22.47 0.22 -1.07 16 27 C -0.15 -3.79 5.79 -20.15 -0.12 -3.91 16 28 C 0.56 15.42 7.50 86.80 0.65 16.07 16 29 O -0.56 -17.99 16.19 -3.87 -0.06 -18.05 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.38 7.52 -2.39 -0.02 1.36 16 32 H 0.10 1.25 7.80 -2.39 -0.02 1.23 16 33 H 0.12 2.27 7.73 -2.38 -0.02 2.26 16 34 H 0.08 2.02 7.50 -2.39 -0.02 2.00 16 35 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 36 H 0.06 2.89 7.00 -2.39 -0.02 2.87 16 37 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.07 2.76 8.10 -2.39 -0.02 2.74 16 39 H 0.07 3.63 7.44 -2.38 -0.02 3.61 16 40 H 0.08 3.12 8.08 -2.39 -0.02 3.10 16 41 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 42 H 0.12 3.18 6.72 -2.91 -0.02 3.16 16 43 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.14 2.79 7.79 -2.91 -0.02 2.77 16 Total: -1.00 -64.97 376.64 4.09 -60.88 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.01 Total: 19.98 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.58 Total: 11.97 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -2.47 Total: -64.22 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -2.06 Total: -71.51 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -64.97 4.09 -60.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646888728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.244 kcal (2) G-P(sol) polarization free energy of solvation -64.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds