Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50704 * 109.46801 * 240.00125 * 2 1 3 5 5 H 1.08000 * 119.99544 * 239.99668 * 4 2 1 6 6 C 1.37875 * 119.99910 * 60.00133 * 4 2 1 7 7 N 1.31517 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99745 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47193 * 60.00258 * 8 6 4 10 10 H 1.48503 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47210 * 300.00124 * 8 6 4 12 12 C 1.50699 * 109.47091 * 120.00178 * 2 1 3 13 13 O 1.20825 * 119.99852 * 119.99945 * 12 2 1 14 14 O 1.34230 * 119.99716 * 299.99829 * 12 2 1 15 15 C 1.45199 * 116.99475 * 180.02562 * 14 12 2 16 16 C 1.50705 * 109.46743 * 180.02562 * 15 14 12 17 17 O 1.21294 * 120.00346 * 359.97438 * 16 15 14 18 18 C 1.46856 * 119.99562 * 180.02562 * 16 15 14 19 19 C 1.40056 * 120.09607 * 180.02562 * 18 16 15 20 20 C 1.37079 * 119.89750 * 180.02562 * 19 18 16 21 21 C 1.39216 * 120.10004 * 0.02562 * 20 19 18 22 22 N 1.39315 * 119.89803 * 179.97438 * 21 20 19 23 23 C 1.46765 * 124.35304 * 174.17402 * 22 21 20 24 24 C 1.54477 * 105.47440 * 197.01689 * 23 22 21 25 25 C 1.54625 * 101.76748 * 334.57792 * 24 23 22 26 26 C 1.34420 * 124.35069 * 353.86591 * 22 21 20 27 27 O 1.21280 * 124.94473 * 359.58012 * 26 22 21 28 28 C 1.39210 * 120.20182 * 0.22648 * 21 20 19 29 29 C 1.37081 * 120.10139 * 359.49397 * 28 21 20 30 30 H 1.09002 * 109.47460 * 59.99947 * 1 2 3 31 31 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47344 * 299.99433 * 1 2 3 33 33 H 0.96995 * 119.99915 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47158 * 60.00448 * 15 14 12 35 35 H 1.09001 * 109.47747 * 300.00260 * 15 14 12 36 36 H 1.08005 * 120.05429 * 359.97438 * 19 18 16 37 37 H 1.08004 * 119.94800 * 179.97438 * 20 19 18 38 38 H 1.09000 * 110.23964 * 316.01380 * 23 22 21 39 39 H 1.08996 * 110.24917 * 77.91761 * 23 22 21 40 40 H 1.09003 * 110.97452 * 92.70131 * 24 23 22 41 41 H 1.09006 * 110.96809 * 216.45937 * 24 23 22 42 42 H 1.08998 * 110.48641 * 143.47819 * 25 24 23 43 43 H 1.08997 * 110.48531 * 265.99198 * 25 24 23 44 44 H 1.07997 * 119.95046 * 179.72496 * 28 21 20 45 45 H 1.08005 * 120.05472 * 180.23271 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9858 3.5896 16 6 1.7626 -0.3293 4.8639 17 8 1.0626 0.6601 4.8161 18 6 2.1581 -0.8869 6.1637 19 6 1.7266 -0.2788 7.3493 20 6 2.0986 -0.8024 8.5603 21 6 2.9044 -1.9364 8.6128 22 7 3.2803 -2.4647 9.8459 23 6 4.0213 -3.7198 10.0180 24 6 3.8275 -4.1131 11.4992 25 6 3.5570 -2.7403 12.1572 26 6 3.0162 -1.8873 11.0307 27 8 2.4275 -0.8369 11.1758 28 6 3.3399 -2.5411 7.4370 29 6 2.9682 -2.0278 6.2214 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 0.7081 1.1609 -3.4844 34 1 3.3172 -0.9846 3.5565 35 1 1.8643 -2.0129 3.5568 36 1 1.1025 0.6018 7.3095 37 1 1.7667 -0.3339 9.4751 38 1 3.6121 -4.4917 9.3661 39 1 5.0786 -3.5663 9.8022 40 1 2.9717 -4.7779 11.6176 41 1 4.7317 -4.5681 11.9035 42 1 2.8193 -2.8377 12.9537 43 1 4.4822 -2.3144 12.5454 44 1 3.9685 -3.4181 7.4825 45 1 3.3034 -2.4998 5.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649879361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = -123.005748 kcal Electronic energy + Delta-G solvation = -28580.611836 eV Core-core repulsion = 24335.616759 eV Total energy + Delta-G solvation = -4244.995077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67692 -40.16126 -39.32974 -38.15128 -37.15962 -35.62614 -33.87570 -33.79395 -31.63472 -30.77473 -30.31528 -28.37565 -28.10016 -25.17840 -24.46040 -23.67957 -22.94009 -21.65957 -20.80918 -19.93490 -19.77649 -18.23831 -17.44299 -17.02740 -16.81268 -16.23467 -16.09610 -15.86863 -15.70670 -15.31166 -14.79866 -14.58767 -14.45636 -14.31022 -14.23712 -14.18285 -13.80250 -13.62470 -13.56735 -12.99621 -12.83171 -12.71477 -12.47227 -12.20423 -12.04945 -11.77875 -11.55643 -11.45731 -11.02426 -10.81275 -10.69769 -10.67289 -10.34127 -10.24744 -10.16947 -10.05663 -9.73757 -9.41634 -9.13260 -9.03057 -8.42984 -8.40000 -6.08272 -4.14345 0.32508 1.06262 1.81967 2.17246 2.38735 3.12177 3.26244 3.33593 3.36455 3.41957 3.51856 3.55760 3.71008 4.08858 4.17910 4.25078 4.42254 4.44079 4.53207 4.72437 4.76241 4.88108 4.96465 5.00010 5.07592 5.15677 5.21993 5.23969 5.24285 5.28835 5.31058 5.65129 5.67615 5.83520 6.00867 6.04315 6.18786 6.48196 6.58832 6.71023 6.91249 6.92031 7.15824 7.42602 7.45989 7.50690 7.76745 7.96293 8.15599 8.80353 8.93758 9.50838 10.98994 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.001745 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.153153 B =16038.351522 C =16833.850934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.466 3.534 13 O -0.518 6.518 14 O -0.347 6.347 15 C 0.017 3.983 16 C 0.396 3.604 17 O -0.427 6.427 18 C -0.188 4.188 19 C -0.026 4.026 20 C -0.172 4.172 21 C 0.194 3.806 22 N -0.559 5.559 23 C 0.091 3.909 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.515 3.485 27 O -0.503 6.503 28 C -0.170 4.170 29 C -0.043 4.043 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 -10.965 30.608 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.405 6.405 14 O -0.265 6.265 15 C -0.059 4.059 16 C 0.272 3.728 17 O -0.300 6.300 18 C -0.190 4.190 19 C -0.045 4.045 20 C -0.191 4.191 21 C 0.099 3.901 22 N -0.282 5.282 23 C -0.031 4.031 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.304 3.696 27 O -0.378 6.378 28 C -0.191 4.191 29 C -0.062 4.062 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.151 0.849 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.222 -10.063 30.542 32.753 hybrid contribution 0.594 -0.792 -0.820 1.285 sum 6.816 -10.855 29.722 32.368 Atomic orbital electron populations 1.21741 0.95467 1.00048 1.01946 1.18785 0.94996 0.97061 0.85205 0.91637 1.21080 1.32081 1.13278 0.88736 0.90672 1.24944 0.94918 0.95028 0.99121 1.69877 1.36321 1.22738 1.23974 0.86421 0.79238 0.79626 0.81344 1.20118 1.21220 1.20109 1.25514 0.76423 0.83200 0.83758 1.90487 1.36545 1.26790 1.86685 1.86748 1.70018 1.54999 1.14700 1.23064 1.00710 0.97112 0.84970 1.22133 0.78212 0.83746 0.88716 1.90572 1.28123 1.21955 1.89306 1.20329 1.04792 0.99499 0.94352 1.21196 0.95070 0.97931 0.90331 1.21473 1.00489 0.96834 1.00351 1.18053 0.94463 0.93621 0.83981 1.45782 1.53570 1.23912 1.04930 1.22353 0.97268 0.85028 0.98407 1.22632 1.04389 0.96647 0.93223 1.22358 1.04250 0.95340 0.97371 1.21198 0.78470 0.85358 0.84569 1.90662 1.40026 1.22206 1.84878 1.20585 1.04966 1.02839 0.90697 1.21185 0.93615 0.93396 0.98010 0.88516 0.95019 0.95536 0.92610 0.88388 0.88401 0.84153 0.82237 0.89063 0.89697 0.89400 0.88342 0.87246 0.87121 0.84926 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.90 37.16 0.33 -2.96 16 2 C 0.06 1.52 2.74 -92.92 -0.25 1.27 16 3 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 4 C -0.51 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.08 2.18 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.47 11.11 7.25 36.01 0.26 11.37 16 13 O -0.52 -12.90 15.21 -18.75 -0.29 -13.19 16 14 O -0.35 -7.32 9.66 -45.90 -0.44 -7.76 16 15 C 0.02 0.26 4.55 36.01 0.16 0.43 16 16 C 0.40 6.00 7.19 -30.82 -0.22 5.78 16 17 O -0.43 -7.92 16.48 -14.11 -0.23 -8.16 16 18 C -0.19 -2.27 5.87 -105.05 -0.62 -2.89 16 19 C -0.03 -0.32 9.56 -39.32 -0.38 -0.69 16 20 C -0.17 -1.92 9.23 -39.64 -0.37 -2.29 16 21 C 0.19 1.82 6.60 -83.73 -0.55 1.27 16 22 N -0.56 -4.01 3.12 -112.25 -0.35 -4.36 16 23 C 0.09 0.26 6.24 -3.12 -0.02 0.25 16 24 C -0.13 -0.15 7.18 -25.10 -0.18 -0.33 16 25 C -0.15 -0.49 6.86 -26.74 -0.18 -0.67 16 26 C 0.51 4.12 7.92 -10.85 -0.09 4.04 16 27 O -0.50 -5.99 14.79 5.56 0.08 -5.91 16 28 C -0.17 -1.38 9.35 -39.64 -0.37 -1.75 16 29 C -0.04 -0.41 9.44 -39.32 -0.37 -0.78 16 30 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.10 1.38 8.08 -51.93 -0.42 0.96 16 36 H 0.14 1.67 7.64 -52.48 -0.40 1.27 16 37 H 0.16 1.93 5.23 -52.48 -0.27 1.66 16 38 H 0.09 0.18 7.69 -51.93 -0.40 -0.22 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.13 0.69 6.99 -52.49 -0.37 0.32 16 45 H 0.14 1.08 7.03 -52.48 -0.37 0.71 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -35.47 380.96 -8.94 -44.42 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.83 Total: -1.69 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.23 Total: -1.15 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.28 Total: -28.83 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.88 Total: -35.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.47 -8.94 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649879361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.589 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds