Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50704 * 109.46801 * 240.00125 * 2 1 3 5 5 H 1.08000 * 119.99544 * 239.99668 * 4 2 1 6 6 C 1.37875 * 119.99910 * 60.00133 * 4 2 1 7 7 N 1.31517 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99745 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47193 * 60.00258 * 8 6 4 10 10 H 1.48503 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47210 * 300.00124 * 8 6 4 12 12 C 1.50699 * 109.47091 * 120.00178 * 2 1 3 13 13 O 1.20825 * 119.99852 * 119.99945 * 12 2 1 14 14 O 1.34230 * 119.99716 * 299.99829 * 12 2 1 15 15 C 1.45199 * 116.99475 * 180.02562 * 14 12 2 16 16 C 1.50705 * 109.46743 * 180.02562 * 15 14 12 17 17 O 1.21294 * 120.00346 * 359.97438 * 16 15 14 18 18 C 1.46856 * 119.99562 * 180.02562 * 16 15 14 19 19 C 1.40056 * 120.09607 * 180.02562 * 18 16 15 20 20 C 1.37079 * 119.89750 * 180.02562 * 19 18 16 21 21 C 1.39216 * 120.10004 * 0.02562 * 20 19 18 22 22 N 1.39315 * 119.89803 * 179.97438 * 21 20 19 23 23 C 1.46765 * 124.35304 * 174.17402 * 22 21 20 24 24 C 1.54477 * 105.47440 * 197.01689 * 23 22 21 25 25 C 1.54625 * 101.76748 * 334.57792 * 24 23 22 26 26 C 1.34420 * 124.35069 * 353.86591 * 22 21 20 27 27 O 1.21280 * 124.94473 * 359.58012 * 26 22 21 28 28 C 1.39210 * 120.20182 * 0.22648 * 21 20 19 29 29 C 1.37081 * 120.10139 * 359.49397 * 28 21 20 30 30 H 1.09002 * 109.47460 * 59.99947 * 1 2 3 31 31 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47344 * 299.99433 * 1 2 3 33 33 H 0.96995 * 119.99915 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47158 * 60.00448 * 15 14 12 35 35 H 1.09001 * 109.47747 * 300.00260 * 15 14 12 36 36 H 1.08005 * 120.05429 * 359.97438 * 19 18 16 37 37 H 1.08004 * 119.94800 * 179.97438 * 20 19 18 38 38 H 1.09000 * 110.23964 * 316.01380 * 23 22 21 39 39 H 1.08996 * 110.24917 * 77.91761 * 23 22 21 40 40 H 1.09003 * 110.97452 * 92.70131 * 24 23 22 41 41 H 1.09006 * 110.96809 * 216.45937 * 24 23 22 42 42 H 1.08998 * 110.48641 * 143.47819 * 25 24 23 43 43 H 1.08997 * 110.48531 * 265.99198 * 25 24 23 44 44 H 1.07997 * 119.95046 * 179.72496 * 28 21 20 45 45 H 1.08005 * 120.05472 * 180.23271 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2518 2.4496 15 6 2.2277 -0.9858 3.5896 16 6 1.7626 -0.3293 4.8639 17 8 1.0626 0.6601 4.8161 18 6 2.1581 -0.8869 6.1637 19 6 1.7266 -0.2788 7.3493 20 6 2.0986 -0.8024 8.5603 21 6 2.9044 -1.9364 8.6128 22 7 3.2803 -2.4647 9.8459 23 6 4.0213 -3.7198 10.0180 24 6 3.8275 -4.1131 11.4992 25 6 3.5570 -2.7403 12.1572 26 6 3.0162 -1.8873 11.0307 27 8 2.4275 -0.8369 11.1758 28 6 3.3399 -2.5411 7.4370 29 6 2.9682 -2.0278 6.2214 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 0.7081 1.1609 -3.4844 34 1 3.3172 -0.9846 3.5565 35 1 1.8643 -2.0129 3.5568 36 1 1.1025 0.6018 7.3095 37 1 1.7667 -0.3339 9.4751 38 1 3.6121 -4.4917 9.3661 39 1 5.0786 -3.5663 9.8022 40 1 2.9717 -4.7779 11.6176 41 1 4.7317 -4.5681 11.9035 42 1 2.8193 -2.8377 12.9537 43 1 4.4822 -2.3144 12.5454 44 1 3.9685 -3.4181 7.4825 45 1 3.3034 -2.4998 5.3096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649879361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = -142.831721 kcal Electronic energy + Delta-G solvation = -28581.471555 eV Core-core repulsion = 24335.616759 eV Total energy + Delta-G solvation = -4245.854795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26101 -41.60668 -40.67047 -39.16313 -37.75448 -37.36495 -35.92578 -34.37348 -32.78691 -32.38555 -31.30709 -29.22184 -28.67694 -27.28600 -25.50536 -24.68098 -24.15725 -22.22717 -21.65632 -21.60373 -20.72809 -18.89590 -18.65827 -18.32880 -17.91135 -17.70997 -17.58818 -17.34549 -16.76021 -16.45450 -16.05026 -15.87656 -15.45381 -15.18286 -14.89824 -14.81329 -14.75334 -14.60772 -14.54011 -14.18976 -14.11020 -13.73405 -13.51133 -13.38428 -13.27930 -12.96587 -12.78190 -12.61610 -12.40674 -12.30673 -12.30516 -12.04002 -12.01194 -11.78609 -11.25983 -11.24928 -11.12207 -10.96513 -10.71289 -10.52701 -10.21448 -9.12801 -8.18685 -6.33099 -0.58425 0.27964 0.99978 1.37792 1.43702 1.46839 1.52924 1.54621 1.64359 1.68395 2.43594 2.68782 2.90822 3.11277 3.19684 3.50942 3.69242 3.79836 3.95587 3.98257 4.06289 4.06600 4.08030 4.17338 4.20740 4.34967 4.44680 4.60223 4.64247 4.66722 4.80642 4.88538 4.93033 4.96551 4.98528 5.07174 5.08832 5.18294 5.24305 5.31731 5.36119 5.41696 5.67476 5.82282 5.86406 5.92213 6.07966 6.34140 6.73430 6.83965 6.98103 7.35748 8.87830 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.001745 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.153153 B =16038.351522 C =16833.850934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.272 1.272 12 C 0.476 3.524 13 O -0.531 6.531 14 O -0.357 6.357 15 C 0.008 3.992 16 C 0.406 3.594 17 O -0.476 6.476 18 C -0.207 4.207 19 C -0.035 4.035 20 C -0.190 4.190 21 C 0.198 3.802 22 N -0.561 5.561 23 C 0.080 3.920 24 C -0.118 4.118 25 C -0.146 4.146 26 C 0.498 3.502 27 O -0.554 6.554 28 C -0.158 4.158 29 C -0.033 4.033 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.174 0.826 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.882 -14.324 31.713 35.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.065 0.935 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.321 3.679 13 O -0.420 6.420 14 O -0.274 6.274 15 C -0.066 4.066 16 C 0.285 3.715 17 O -0.352 6.352 18 C -0.209 4.209 19 C -0.054 4.054 20 C -0.210 4.210 21 C 0.102 3.898 22 N -0.282 5.282 23 C -0.040 4.040 24 C -0.156 4.156 25 C -0.186 4.186 26 C 0.290 3.710 27 O -0.432 6.432 28 C -0.179 4.179 29 C -0.051 4.051 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.191 0.809 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.349 -13.462 31.685 35.424 hybrid contribution -0.019 0.224 -0.958 0.984 sum 8.330 -13.239 30.727 34.479 Atomic orbital electron populations 1.21566 0.94642 1.00002 1.01698 1.18705 0.95795 0.96228 0.86389 0.93477 1.21223 1.32739 1.13394 0.90121 0.91896 1.25724 0.94886 0.95663 1.01825 1.69978 1.36638 1.23532 1.24825 0.85449 0.78743 0.78621 0.77868 1.19633 1.20189 1.19707 1.24823 0.76114 0.82673 0.84277 1.90461 1.37102 1.27243 1.87191 1.86669 1.70045 1.55660 1.15072 1.23551 1.02175 0.97788 0.83103 1.22389 0.76857 0.82742 0.89532 1.90562 1.30714 1.24147 1.89818 1.20082 1.07167 1.01304 0.92343 1.21111 0.95411 0.97892 0.90966 1.21380 1.02046 0.98321 0.99294 1.18258 0.93109 0.92664 0.85814 1.46127 1.53132 1.25094 1.03859 1.22787 0.97833 0.83273 1.00065 1.22692 1.06070 0.95235 0.91591 1.22435 1.04739 0.95683 0.95709 1.22239 0.77564 0.85105 0.86099 1.90636 1.42223 1.24628 1.85736 1.20947 1.04308 1.03378 0.89223 1.21467 0.92030 0.91928 0.99693 0.90315 0.94837 0.94097 0.92291 0.86062 0.86030 0.85606 0.83814 0.87488 0.87799 0.88832 0.85418 0.86581 0.85517 0.80876 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.90 71.98 0.64 -5.40 16 2 C 0.05 2.54 2.74 -12.28 -0.03 2.51 16 3 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.54 -30.63 8.37 25.60 0.21 -30.42 16 5 H 0.06 3.68 6.76 -2.91 -0.02 3.66 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -51.68 11.32 21.45 0.24 -51.43 16 8 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.48 22.74 7.25 71.24 0.52 23.26 16 13 O -0.53 -26.15 15.21 21.97 0.33 -25.81 16 14 O -0.36 -15.09 9.66 -45.07 -0.44 -15.52 16 15 C 0.01 0.24 4.55 71.24 0.32 0.56 16 16 C 0.41 12.41 7.19 27.94 0.20 12.61 16 17 O -0.48 -18.55 16.48 15.72 0.26 -18.29 16 18 C -0.21 -4.97 5.87 -20.14 -0.12 -5.09 16 19 C -0.03 -0.88 9.56 22.44 0.21 -0.67 16 20 C -0.19 -4.45 9.23 22.23 0.21 -4.25 16 21 C 0.20 3.44 6.60 38.42 0.25 3.69 16 22 N -0.56 -6.85 3.12 -627.63 -1.96 -8.81 16 23 C 0.08 0.13 6.24 86.83 0.54 0.67 16 24 C -0.12 0.24 7.18 31.65 0.23 0.46 16 25 C -0.15 -0.56 6.86 30.59 0.21 -0.35 16 26 C 0.50 7.59 7.92 87.90 0.70 8.29 16 27 O -0.55 -13.87 14.79 -3.03 -0.04 -13.92 16 28 C -0.16 -2.03 9.35 22.23 0.21 -1.82 16 29 C -0.03 -0.53 9.44 22.44 0.21 -0.32 16 30 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 31 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.04 1.86 8.11 -2.39 -0.02 1.84 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.12 3.17 8.07 -2.39 -0.02 3.15 16 35 H 0.12 3.17 8.08 -2.39 -0.02 3.16 16 36 H 0.13 3.40 7.64 -2.91 -0.02 3.38 16 37 H 0.14 3.85 5.23 -2.91 -0.02 3.84 16 38 H 0.11 -0.12 7.69 -2.39 -0.02 -0.13 16 39 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.17 0.82 6.99 -2.91 -0.02 0.80 16 45 H 0.16 1.88 7.03 -2.91 -0.02 1.86 16 Total: -1.00 -80.54 380.96 6.41 -74.13 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.03 Total: 8.54 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.96 Total: 5.23 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -1.72 Total: -60.24 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: 0.11 Total: -73.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -80.54 6.41 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649879361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.704 kcal (2) G-P(sol) polarization free energy of solvation -80.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds