Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.40517 * 2 1 4 4 C 1.53248 * 109.40834 * 119.84150 * 2 1 3 5 5 S 1.81895 * 108.50519 * 182.03998 * 4 2 1 6 6 C 1.81894 * 101.91708 * 308.69593 * 5 4 2 7 7 C 1.53251 * 108.50549 * 51.30352 * 6 5 4 8 8 N 1.46462 * 109.86154 * 297.99919 * 7 6 5 9 9 C 1.37885 * 111.00004 * 197.76667 * 8 7 6 10 10 N 1.31877 * 126.32637 * 298.67749 * 9 8 7 11 11 N 1.28526 * 110.07693 * 179.85516 * 10 9 8 12 12 C 1.31832 * 109.83334 * 0.42398 * 11 10 9 13 13 C 1.46883 * 126.48344 * 179.76702 * 12 11 10 14 14 N 1.33083 * 120.33440 * 179.69444 * 13 12 11 15 15 C 1.31466 * 121.62803 * 179.72546 * 14 13 12 16 16 C 1.38859 * 122.19637 * 0.59277 * 15 14 13 17 17 C 1.36708 * 120.45076 * 359.68206 * 16 15 14 18 18 C 1.41281 * 118.37438 * 0.02581 * 17 16 15 19 19 C 1.40657 * 120.98425 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00116 * 210.52488 * 19 18 17 21 21 C 1.39991 * 120.00004 * 30.53059 * 19 18 17 22 22 N 1.30821 * 120.00302 * 9.79681 * 21 19 18 23 23 Si 1.86801 * 119.99761 * 189.80027 * 21 19 18 24 24 H 1.48493 * 109.47531 * 59.99687 * 23 21 19 25 25 H 1.48503 * 109.47178 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47083 * 299.99593 * 23 21 19 27 27 N 1.36295 * 126.33094 * 118.99903 * 9 8 7 28 28 C 1.46506 * 127.13451 * 359.93814 * 27 9 8 29 29 H 1.08997 * 109.46805 * 294.12520 * 1 2 3 30 30 H 1.08992 * 109.47270 * 54.13221 * 1 2 3 31 31 H 1.09004 * 109.46862 * 174.13003 * 1 2 3 32 32 H 1.08997 * 109.62947 * 301.74943 * 4 2 1 33 33 H 1.09000 * 109.62729 * 62.33976 * 4 2 1 34 34 H 1.09007 * 109.63053 * 171.00535 * 6 5 4 35 35 H 1.08993 * 109.63511 * 291.39921 * 6 5 4 36 36 H 1.09008 * 109.40373 * 58.11634 * 7 6 5 37 37 H 1.09001 * 109.40895 * 177.87446 * 7 6 5 38 38 H 1.07995 * 118.90349 * 180.27227 * 15 14 13 39 39 H 1.07997 * 119.77764 * 179.70787 * 16 15 14 40 40 H 1.07996 * 120.81390 * 179.97438 * 17 16 15 41 41 H 0.97001 * 120.00439 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.46649 * 95.41125 * 28 27 9 43 43 H 1.09000 * 109.46564 * 215.41438 * 28 27 9 44 44 H 1.08999 * 109.47146 * 335.41086 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0393 -0.7192 1.2537 5 16 3.8570 -0.6519 1.2597 6 6 4.2612 -1.2694 -0.4027 7 6 3.4461 -0.4745 -1.4284 8 7 2.0151 -0.6868 -1.1993 9 6 1.2784 -0.3260 -2.3075 10 7 1.2144 0.8764 -2.8455 11 7 0.4378 0.8608 -3.8695 12 6 -0.0495 -0.3518 -4.0429 13 6 -0.9772 -0.7774 -5.0992 14 7 -1.3885 -2.0415 -5.1633 15 6 -2.2224 -2.4487 -6.0944 16 6 -2.7149 -1.5941 -7.0718 17 6 -2.3455 -0.2781 -7.0915 18 6 -1.4547 0.1842 -6.0971 19 6 -1.0380 1.5273 -6.0659 20 1 -0.0604 1.7806 -5.6831 21 6 -1.8905 2.5356 -6.5310 22 7 -3.1374 2.2590 -6.8141 23 14 -1.2474 4.2760 -6.7474 24 1 -0.1292 4.2728 -7.7244 25 1 -2.3396 5.1485 -7.2488 26 1 -0.7623 4.7905 -5.4416 27 7 0.4768 -1.1445 -3.0458 28 6 0.2272 -2.5713 -2.8256 29 1 -0.3633 0.4200 0.9379 30 1 -0.3633 0.6021 -0.8327 31 1 -0.3633 -1.0223 -0.1051 32 1 1.6515 -0.2232 2.1434 33 1 1.7114 -1.7586 1.2382 34 1 5.3254 -1.1328 -0.5954 35 1 4.0096 -2.3277 -0.4715 36 1 3.6752 0.5866 -1.3292 37 1 3.7053 -0.8072 -2.4335 38 1 -2.5308 -3.4837 -6.1025 39 1 -3.3947 -1.9715 -7.8212 40 1 -2.7246 0.3917 -7.8491 41 1 -3.7280 2.9576 -7.1367 42 1 -0.6865 -2.6947 -2.2442 43 1 0.1170 -3.0733 -3.7869 44 1 1.0654 -3.0072 -2.2821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650259538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = 111.293504 kcal Electronic energy + Delta-G solvation = -28465.975525 eV Core-core repulsion = 24738.478800 eV Total energy + Delta-G solvation = -3727.496725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.68556 -40.04166 -39.56966 -36.17902 -35.60084 -34.12329 -33.20307 -32.52642 -31.54380 -29.11697 -28.35873 -28.14481 -27.54868 -24.44095 -24.07538 -23.68888 -22.96632 -21.66192 -20.86061 -19.29379 -18.48001 -17.76841 -17.64471 -17.43192 -17.25671 -16.61603 -16.40162 -15.89571 -15.70354 -15.30656 -15.13678 -14.57766 -14.41772 -14.32156 -14.13389 -13.90453 -13.76929 -13.72174 -13.54074 -13.34147 -13.31598 -13.15885 -13.11212 -12.79352 -12.61606 -12.42368 -12.15398 -11.95041 -11.68849 -11.43511 -11.24612 -10.98796 -10.79267 -10.63305 -10.17417 -10.05255 -9.87281 -9.05529 -8.77556 -8.72890 -6.46077 0.13957 0.74148 0.91154 1.23543 1.32561 1.35561 1.46223 1.46590 1.52385 2.05547 2.16924 2.57275 2.71560 3.39513 3.51888 3.64834 3.65515 3.88313 3.96188 4.03348 4.04492 4.17672 4.23209 4.37344 4.41163 4.44038 4.51026 4.55118 4.60260 4.64924 4.69762 4.74985 4.80076 4.86261 4.93087 4.93960 5.02740 5.16492 5.21838 5.24658 5.60458 5.61490 5.81678 5.87290 6.05842 6.30676 6.55529 6.63737 6.76137 7.53084 7.88911 8.11575 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003514 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.661155 B = 7966.281422 C = 9227.243642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.098 3.902 3 H 0.055 0.945 4 C -0.055 4.055 5 S -0.286 6.286 6 C -0.060 4.060 7 C 0.069 3.931 8 N -0.459 5.459 9 C 0.337 3.663 10 N -0.348 5.348 11 N -0.309 5.309 12 C 0.275 3.725 13 C -0.014 4.014 14 N -0.446 5.446 15 C -0.032 4.032 16 C -0.133 4.133 17 C -0.145 4.145 18 C 0.074 3.926 19 C -0.422 4.422 20 H 0.100 0.900 21 C 0.038 3.962 22 N -0.801 5.801 23 Si 0.980 3.020 24 H -0.255 1.255 25 H -0.257 1.257 26 H -0.271 1.271 27 N -0.459 5.459 28 C 0.094 3.906 29 H 0.095 0.905 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.163 0.837 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.297 0.703 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -7.638 10.807 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 H 0.073 0.927 4 C -0.204 4.204 5 S -0.058 6.058 6 C -0.208 4.208 7 C -0.060 4.060 8 N -0.186 5.186 9 C -0.019 4.019 10 N -0.194 5.194 11 N -0.152 5.152 12 C 0.012 3.988 13 C -0.152 4.152 14 N -0.155 5.155 15 C -0.197 4.197 16 C -0.154 4.154 17 C -0.171 4.171 18 C 0.066 3.934 19 C -0.451 4.451 20 H 0.118 0.882 21 C -0.180 4.180 22 N -0.425 5.425 23 Si 0.801 3.199 24 H -0.179 1.179 25 H -0.181 1.181 26 H -0.196 1.196 27 N -0.151 5.151 28 C -0.047 4.047 29 H 0.114 0.886 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.329 -6.835 12.120 16.217 hybrid contribution -1.403 0.514 -1.874 2.396 sum 6.926 -6.322 10.247 13.890 Atomic orbital electron populations 1.21875 0.93490 1.02280 1.02421 1.21855 0.95874 0.95920 0.87465 0.92672 1.23563 0.92296 1.05268 0.99264 1.87017 1.08785 1.87422 1.22614 1.23514 1.03557 1.02771 0.91000 1.22275 0.83660 0.99958 1.00108 1.57810 1.03352 1.58850 0.98617 1.21826 0.97943 0.86695 0.95436 1.74649 1.18407 1.18905 1.07401 1.74753 1.11344 1.16875 1.12183 1.22251 0.98054 0.87132 0.91357 1.19112 1.07536 0.91558 0.97033 1.66920 1.10322 1.15131 1.23115 1.22149 1.01419 1.00389 0.95747 1.21722 0.99750 0.94062 0.99874 1.21449 1.01239 0.95333 0.99103 1.19492 0.90821 0.93590 0.89447 1.20222 1.02697 0.91182 1.30963 0.88225 1.26835 0.94203 1.05656 0.91341 1.69772 1.05362 1.37826 1.29582 0.85261 0.79407 0.75617 0.79664 1.17928 1.18057 1.19569 1.46234 1.34618 1.11982 1.22265 1.22110 1.03074 0.75123 1.04428 0.88630 0.95911 0.91638 0.85090 0.87709 0.85001 0.87699 0.92850 0.90117 0.82020 0.84600 0.86178 0.89189 0.90642 0.88894 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.49 71.98 0.61 -3.07 16 2 C 0.10 2.38 2.45 45.08 0.11 2.49 16 3 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 4 C -0.06 -0.97 5.97 72.07 0.43 -0.54 16 5 S -0.29 -5.47 22.39 -56.49 -1.27 -6.74 16 6 C -0.06 -1.02 6.69 72.07 0.48 -0.54 16 7 C 0.07 1.64 5.33 86.47 0.46 2.10 16 8 N -0.46 -12.48 4.27 -683.54 -2.92 -15.40 16 9 C 0.34 12.34 4.32 260.25 1.13 13.47 16 10 N -0.35 -15.65 11.95 -58.19 -0.70 -16.35 16 11 N -0.31 -15.76 9.28 -51.08 -0.47 -16.23 16 12 C 0.27 13.22 7.75 135.68 1.05 14.27 16 13 C -0.01 -0.72 6.96 43.39 0.30 -0.42 16 14 N -0.45 -19.75 8.01 -179.69 -1.44 -21.19 16 15 C -0.03 -1.30 11.11 84.90 0.94 -0.36 16 16 C -0.13 -5.51 9.98 22.06 0.22 -5.29 16 17 C -0.14 -7.06 8.71 22.66 0.20 -6.86 16 18 C 0.07 3.91 5.70 -19.76 -0.11 3.79 16 19 C -0.42 -22.76 8.11 23.29 0.19 -22.57 16 20 H 0.10 5.60 5.77 -2.91 -0.02 5.59 16 21 C 0.04 1.88 5.29 85.27 0.45 2.33 16 22 N -0.80 -39.46 10.97 21.84 0.24 -39.22 16 23 Si 0.98 39.01 29.57 68.60 2.03 41.04 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 N -0.46 -17.70 3.23 -540.72 -1.75 -19.45 16 28 C 0.09 2.79 10.51 127.77 1.34 4.14 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.02 0.79 6.95 -2.39 -0.02 0.77 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.43 7.92 -2.38 -0.02 1.41 16 37 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 38 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.12 5.95 6.45 -2.91 -0.02 5.93 16 41 H 0.30 13.10 8.30 -92.71 -0.77 12.33 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 2.95 6.61 -2.39 -0.02 2.93 16 44 H 0.11 2.46 8.09 -2.39 -0.02 2.44 16 Total: -1.00 -64.51 367.42 2.56 -61.96 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 1.02 Total: 28.65 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 7.81 Total: 2.94 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -7.04 Total: -127.84 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.27 Total: -6.74 kcal Total: -64.51 2.56 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650259538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.249 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds