Wall clock time and date at job start Wed Apr 1 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35878 * 116.99703 * 2 1 4 4 C 1.38163 * 120.22617 * 359.97438 * 3 2 1 5 5 C 1.38748 * 120.31695 * 179.97438 * 4 3 2 6 6 C 1.37758 * 120.71699 * 359.97438 * 5 4 3 7 7 C 1.39180 * 120.02961 * 0.02562 * 6 5 4 8 8 N 1.37696 * 133.38576 * 179.97438 * 7 6 5 9 9 H 0.96998 * 125.06633 * 0.02562 * 8 7 6 10 10 C 1.36933 * 109.86511 * 179.97438 * 8 7 6 11 11 C 1.34207 * 109.89464 * 359.97438 * 10 8 7 12 12 C 1.50699 * 126.50377 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47345 * 265.02973 * 12 11 10 14 14 O 1.20829 * 120.00231 * 5.59165 * 13 12 11 15 15 O 1.34235 * 120.00094 * 185.59033 * 13 12 11 16 16 C 1.45196 * 116.99811 * 174.78503 * 15 13 12 17 17 C 1.53001 * 109.47201 * 184.34567 * 16 15 13 18 18 C 1.50704 * 113.07888 * 53.36022 * 17 16 15 19 19 H 1.08002 * 120.00072 * 250.86881 * 18 17 16 20 20 C 1.37871 * 120.00334 * 70.86720 * 18 17 16 21 21 N 1.31506 * 120.00510 * 190.49718 * 20 18 17 22 22 Si 1.86802 * 119.99481 * 10.49178 * 20 18 17 23 23 H 1.48503 * 109.47250 * 94.27827 * 22 20 18 24 24 H 1.48507 * 109.47150 * 214.27475 * 22 20 18 25 25 H 1.48499 * 109.47465 * 334.27633 * 22 20 18 26 26 C 1.54032 * 113.81910 * 185.26690 * 17 16 15 27 27 O 1.44180 * 85.51546 * 136.80634 * 26 17 16 28 28 C 1.44170 * 93.34247 * 335.80504 * 27 26 17 29 29 C 1.40029 * 120.21817 * 180.25849 * 3 2 1 30 30 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47469 * 300.00166 * 1 2 3 32 32 H 1.09003 * 109.46596 * 60.00289 * 1 2 3 33 33 H 1.07995 * 119.84242 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.64004 * 179.97438 * 5 4 3 35 35 H 1.08007 * 119.98501 * 180.02562 * 6 5 4 36 36 H 1.08003 * 125.05079 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47250 * 145.02823 * 12 11 10 38 38 H 1.09002 * 109.46920 * 25.02915 * 12 11 10 39 39 H 1.09010 * 109.47183 * 64.35211 * 16 15 13 40 40 H 1.08993 * 109.47633 * 304.34696 * 16 15 13 41 41 H 0.97003 * 120.00403 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.86426 * 250.95047 * 26 17 16 43 43 H 1.08992 * 113.86577 * 22.66037 * 26 17 16 44 44 H 1.09004 * 113.86893 * 270.04443 * 28 27 26 45 45 H 1.09006 * 113.98451 * 138.35661 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2979 2.3724 -0.0005 5 6 1.9257 3.6096 0.0000 6 6 3.3003 3.7012 0.0016 7 6 4.0753 2.5452 0.0022 8 7 5.4332 2.3168 0.0032 9 1 6.1144 3.0074 0.0041 10 6 5.6785 0.9697 0.0039 11 6 4.5188 0.2943 0.0039 12 6 4.3537 -1.2036 0.0041 13 6 4.1763 -1.6896 -1.4113 14 8 4.2839 -0.9164 -2.3335 15 8 3.8989 -2.9816 -1.6475 16 6 3.6263 -3.3563 -3.0236 17 6 3.2282 -4.8325 -3.0809 18 6 2.0956 -5.1756 -2.1478 19 1 2.2832 -5.7720 -1.2672 20 6 0.8199 -4.7280 -2.4182 21 7 -0.1246 -4.8462 -1.5108 22 14 0.4332 -3.9535 -4.0735 23 1 -0.1010 -4.9904 -4.9925 24 1 -0.5792 -2.8819 -3.8943 25 1 1.6724 -3.3723 -4.6497 26 6 3.0402 -5.3709 -4.5117 27 8 3.7621 -6.5300 -4.0491 28 6 4.4216 -5.8025 -2.9935 29 6 3.4439 1.2894 -0.0055 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.2193 2.3171 -0.0005 34 1 1.3304 4.5107 -0.0008 35 1 3.7767 4.6705 0.0024 36 1 6.6595 0.5178 0.0052 37 1 3.4768 -1.4725 0.5931 38 1 5.2395 -1.6667 0.4390 39 1 4.5199 -3.1973 -3.6273 40 1 2.8119 -2.7450 -3.4121 41 1 -1.0221 -4.5309 -1.7009 42 1 2.0016 -5.5738 -4.7736 43 1 3.5691 -4.7965 -5.2721 44 1 5.3725 -5.3597 -3.2904 45 1 4.4802 -6.3458 -2.0504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650487116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:25 Heat of formation + Delta-G solvation = -59.783210 kcal Electronic energy + Delta-G solvation = -30941.163300 eV Core-core repulsion = 26698.909758 eV Total energy + Delta-G solvation = -4242.253542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38307 -39.91228 -39.17938 -38.91793 -36.11076 -35.62964 -32.89789 -32.75174 -30.65522 -29.85930 -29.28997 -27.47897 -26.82943 -25.87287 -25.14152 -24.21055 -22.52797 -21.82427 -20.97745 -19.40142 -19.01229 -18.12395 -17.03768 -16.89959 -16.47780 -16.23504 -15.96622 -15.68810 -15.52244 -15.35250 -15.20523 -14.91299 -14.61254 -14.44102 -14.03393 -13.67663 -13.48337 -13.17771 -12.84764 -12.62173 -12.60561 -12.25924 -12.09597 -11.88879 -11.83963 -11.67478 -11.44124 -10.91492 -10.81443 -10.74599 -10.55070 -10.33649 -10.27468 -10.11768 -9.70989 -9.46125 -9.10585 -9.07729 -8.80804 -8.44337 -8.28394 -7.34767 -6.18563 -4.15466 1.21905 1.59161 2.55794 2.92428 3.02948 3.17922 3.23596 3.30495 3.49664 3.60854 3.93318 4.29680 4.61930 4.68532 4.88433 4.95899 5.03898 5.10894 5.20249 5.27204 5.34933 5.36848 5.38679 5.47256 5.67886 5.69821 5.80771 5.82775 5.84489 5.87347 5.92307 6.03232 6.11313 6.11958 6.27522 6.30307 6.45683 6.49338 6.57461 6.65161 6.73866 6.97604 6.99173 7.02488 7.30514 7.48634 7.59481 7.59554 8.38758 8.55154 8.87160 9.42591 10.93696 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003804 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.402222 B = 7358.726265 C = 8632.670055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.186 3.814 4 C -0.252 4.252 5 C -0.057 4.057 6 C -0.177 4.177 7 C 0.134 3.866 8 N -0.593 5.593 9 H 0.416 0.584 10 C 0.051 3.949 11 C -0.131 4.131 12 C -0.040 4.040 13 C 0.459 3.541 14 O -0.520 6.520 15 O -0.325 6.325 16 C 0.074 3.926 17 C -0.004 4.004 18 C -0.481 4.481 19 H 0.085 0.915 20 C 0.082 3.918 21 N -0.883 5.883 22 Si 0.857 3.143 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.257 1.257 26 C 0.027 3.973 27 O -0.374 6.374 28 C 0.043 3.957 29 C -0.122 4.122 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.171 0.829 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.265 0.735 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.862 16.075 5.190 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.139 3.861 4 C -0.272 4.272 5 C -0.076 4.076 6 C -0.198 4.198 7 C 0.026 3.974 8 N -0.196 5.196 9 H 0.253 0.747 10 C -0.074 4.074 11 C -0.138 4.138 12 C -0.078 4.078 13 C 0.302 3.698 14 O -0.410 6.410 15 O -0.240 6.240 16 C 0.000 4.000 17 C -0.005 4.005 18 C -0.518 4.518 19 H 0.103 0.897 20 C -0.121 4.121 21 N -0.520 5.520 22 Si 0.686 3.314 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.182 1.182 26 C -0.050 4.050 27 O -0.293 6.293 28 C -0.034 4.034 29 C -0.127 4.127 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.188 0.812 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.894 15.860 4.859 18.370 hybrid contribution -0.398 1.236 -1.148 1.733 sum 7.496 17.096 3.711 19.033 Atomic orbital electron populations 1.23134 0.77957 1.04873 1.00774 1.86171 1.21646 1.26321 1.87323 1.18495 0.89993 0.84744 0.92837 1.20899 0.99832 0.91877 1.14563 1.20482 0.93210 0.96809 0.97132 1.19799 0.93147 0.95119 1.11771 1.17881 0.83215 0.94274 1.02049 1.41626 1.05232 1.07088 1.65612 0.74682 1.21491 0.99053 0.81936 1.04931 1.19520 0.91070 0.92973 1.10226 1.19552 1.05823 0.90338 0.92053 1.23568 0.72967 0.81073 0.92186 1.90592 1.47566 1.56390 1.46452 1.86572 1.78721 1.26076 1.32652 1.23707 0.98827 0.98944 0.78539 1.21615 0.96296 0.88922 0.93708 1.20310 0.89543 1.33771 1.08195 0.89668 1.24854 0.96369 0.94654 0.96260 1.69898 1.02704 1.46461 1.32920 0.87405 0.78878 0.79408 0.85745 1.20156 1.21552 1.18151 1.24271 0.96584 0.87032 0.97118 1.89546 1.61425 1.28951 1.49355 1.23947 0.94674 0.93261 0.91525 1.18170 0.90109 0.92905 1.11476 0.87380 0.92737 0.92850 0.85478 0.85739 0.86396 0.81163 0.86475 0.87468 0.93635 0.91794 0.92528 0.90172 0.92243 0.92343 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.32 9.76 -19.36 -0.19 -5.51 16 3 C 0.19 3.05 6.72 -38.94 -0.26 2.79 16 4 C -0.25 -3.41 9.04 -39.42 -0.36 -3.77 16 5 C -0.06 -0.66 10.01 -39.57 -0.40 -1.06 16 6 C -0.18 -2.07 10.06 -39.41 -0.40 -2.46 16 7 C 0.13 1.80 7.27 -84.01 -0.61 1.19 16 8 N -0.59 -6.33 6.07 -10.64 -0.06 -6.40 16 9 H 0.42 2.84 8.96 -40.82 -0.37 2.48 16 10 C 0.05 0.60 11.74 -16.69 -0.20 0.40 16 11 C -0.13 -1.98 4.82 -102.72 -0.49 -2.48 16 12 C -0.04 -0.62 6.12 -29.04 -0.18 -0.79 16 13 C 0.46 9.14 7.94 36.00 0.29 9.42 16 14 O -0.52 -11.53 15.79 -18.75 -0.30 -11.82 16 15 O -0.33 -7.12 9.82 -39.27 -0.39 -7.51 16 16 C 0.07 1.65 4.46 37.16 0.17 1.82 16 17 C 0.00 -0.10 0.51 -154.58 -0.08 -0.18 16 18 C -0.48 -13.10 8.54 -34.44 -0.29 -13.39 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.08 2.27 5.46 -17.83 -0.10 2.18 16 21 N -0.88 -25.79 13.96 55.43 0.77 -25.01 16 22 Si 0.86 20.90 23.58 -169.99 -4.01 16.89 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.26 -5.88 4.66 56.52 0.26 -5.62 16 26 C 0.03 0.60 6.41 37.61 0.24 0.84 16 27 O -0.37 -8.49 12.40 -35.23 -0.44 -8.92 16 28 C 0.04 0.88 8.34 37.61 0.31 1.19 16 29 C -0.12 -1.97 6.30 -105.03 -0.66 -2.63 16 30 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.05 0.61 7.67 -51.93 -0.40 0.22 16 32 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 33 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.12 1.90 7.62 -51.93 -0.40 1.50 16 38 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.92 8.05 -51.92 -0.42 0.51 16 40 H 0.06 1.54 5.30 -51.93 -0.28 1.26 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.08 1.84 4.86 -51.93 -0.25 1.59 16 43 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 44 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 45 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -34.83 371.26 -6.94 -41.77 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.90 Total: 6.46 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.02 Total: -5.54 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.71 Total: -31.41 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.31 Total: -33.76 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.01 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.83 -6.94 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650487116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.013 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds