Wall clock time and date at job start Wed Apr 1 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35878 * 116.99703 * 2 1 4 4 C 1.38163 * 120.22617 * 359.97438 * 3 2 1 5 5 C 1.38748 * 120.31695 * 179.97438 * 4 3 2 6 6 C 1.37758 * 120.71699 * 359.97438 * 5 4 3 7 7 C 1.39180 * 120.02961 * 0.02562 * 6 5 4 8 8 N 1.37696 * 133.38576 * 179.97438 * 7 6 5 9 9 H 0.96998 * 125.06633 * 0.02562 * 8 7 6 10 10 C 1.36933 * 109.86511 * 179.97438 * 8 7 6 11 11 C 1.34207 * 109.89464 * 359.97438 * 10 8 7 12 12 C 1.50699 * 126.50377 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47345 * 265.02973 * 12 11 10 14 14 O 1.20829 * 120.00231 * 5.59165 * 13 12 11 15 15 O 1.34235 * 120.00094 * 185.59033 * 13 12 11 16 16 C 1.45196 * 116.99811 * 174.78503 * 15 13 12 17 17 C 1.53001 * 109.47201 * 184.34567 * 16 15 13 18 18 C 1.50704 * 113.07888 * 53.36022 * 17 16 15 19 19 H 1.08002 * 120.00072 * 250.86881 * 18 17 16 20 20 C 1.37871 * 120.00334 * 70.86720 * 18 17 16 21 21 N 1.31506 * 120.00510 * 190.49718 * 20 18 17 22 22 Si 1.86802 * 119.99481 * 10.49178 * 20 18 17 23 23 H 1.48503 * 109.47250 * 94.27827 * 22 20 18 24 24 H 1.48507 * 109.47150 * 214.27475 * 22 20 18 25 25 H 1.48499 * 109.47465 * 334.27633 * 22 20 18 26 26 C 1.54032 * 113.81910 * 185.26690 * 17 16 15 27 27 O 1.44180 * 85.51546 * 136.80634 * 26 17 16 28 28 C 1.44170 * 93.34247 * 335.80504 * 27 26 17 29 29 C 1.40029 * 120.21817 * 180.25849 * 3 2 1 30 30 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47469 * 300.00166 * 1 2 3 32 32 H 1.09003 * 109.46596 * 60.00289 * 1 2 3 33 33 H 1.07995 * 119.84242 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.64004 * 179.97438 * 5 4 3 35 35 H 1.08007 * 119.98501 * 180.02562 * 6 5 4 36 36 H 1.08003 * 125.05079 * 180.02562 * 10 8 7 37 37 H 1.08999 * 109.47250 * 145.02823 * 12 11 10 38 38 H 1.09002 * 109.46920 * 25.02915 * 12 11 10 39 39 H 1.09010 * 109.47183 * 64.35211 * 16 15 13 40 40 H 1.08993 * 109.47633 * 304.34696 * 16 15 13 41 41 H 0.97003 * 120.00403 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.86426 * 250.95047 * 26 17 16 43 43 H 1.08992 * 113.86577 * 22.66037 * 26 17 16 44 44 H 1.09004 * 113.86893 * 270.04443 * 28 27 26 45 45 H 1.09006 * 113.98451 * 138.35661 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2979 2.3724 -0.0005 5 6 1.9257 3.6096 0.0000 6 6 3.3003 3.7012 0.0016 7 6 4.0753 2.5452 0.0022 8 7 5.4332 2.3168 0.0032 9 1 6.1144 3.0074 0.0041 10 6 5.6785 0.9697 0.0039 11 6 4.5188 0.2943 0.0039 12 6 4.3537 -1.2036 0.0041 13 6 4.1763 -1.6896 -1.4113 14 8 4.2839 -0.9164 -2.3335 15 8 3.8989 -2.9816 -1.6475 16 6 3.6263 -3.3563 -3.0236 17 6 3.2282 -4.8325 -3.0809 18 6 2.0956 -5.1756 -2.1478 19 1 2.2832 -5.7720 -1.2672 20 6 0.8199 -4.7280 -2.4182 21 7 -0.1246 -4.8462 -1.5108 22 14 0.4332 -3.9535 -4.0735 23 1 -0.1010 -4.9904 -4.9925 24 1 -0.5792 -2.8819 -3.8943 25 1 1.6724 -3.3723 -4.6497 26 6 3.0402 -5.3709 -4.5117 27 8 3.7621 -6.5300 -4.0491 28 6 4.4216 -5.8025 -2.9935 29 6 3.4439 1.2894 -0.0055 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.2193 2.3171 -0.0005 34 1 1.3304 4.5107 -0.0008 35 1 3.7767 4.6705 0.0024 36 1 6.6595 0.5178 0.0052 37 1 3.4768 -1.4725 0.5931 38 1 5.2395 -1.6667 0.4390 39 1 4.5199 -3.1973 -3.6273 40 1 2.8119 -2.7450 -3.4121 41 1 -1.0221 -4.5309 -1.7009 42 1 2.0016 -5.5738 -4.7736 43 1 3.5691 -4.7965 -5.2721 44 1 5.3725 -5.3597 -3.2904 45 1 4.4802 -6.3458 -2.0504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650487116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:24 Heat of formation + Delta-G solvation = -84.067813 kcal Electronic energy + Delta-G solvation = -30942.216359 eV Core-core repulsion = 26698.909758 eV Total energy + Delta-G solvation = -4243.306601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36460 -41.59882 -40.80204 -40.02694 -37.40189 -36.95951 -34.87257 -33.95525 -32.48001 -30.96497 -30.26108 -28.64522 -27.95537 -27.55522 -27.04817 -25.96602 -23.48967 -22.79979 -22.41142 -20.95694 -20.46504 -19.19038 -18.69671 -18.30809 -17.94790 -17.80255 -17.33296 -17.25761 -16.85560 -16.69568 -16.34717 -16.26109 -16.00017 -15.80191 -15.61463 -15.08661 -14.90325 -14.72927 -14.33688 -13.91729 -13.78531 -13.65420 -13.46583 -13.37868 -12.89709 -12.85902 -12.75741 -12.48688 -12.41095 -12.17980 -12.06858 -11.93781 -11.81951 -11.78676 -11.37517 -11.28688 -10.95837 -10.75058 -10.34152 -10.13802 -9.24341 -8.34041 -8.33274 -6.34329 0.24085 0.59822 1.22658 1.25365 1.31561 1.33542 1.53878 2.14725 2.21777 2.25166 2.46397 2.81524 2.90607 3.11342 3.63073 3.77446 3.88437 4.02713 4.05778 4.08255 4.14867 4.18437 4.29156 4.29304 4.34269 4.41663 4.42291 4.45077 4.50981 4.55298 4.65574 4.67905 4.69905 4.81141 4.85289 4.94748 5.08439 5.25420 5.34034 5.37916 5.54809 5.56758 5.61995 5.69602 5.77182 6.02754 6.24496 6.52209 6.66169 6.75611 6.96811 7.26573 8.81983 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003804 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.402222 B = 7358.726265 C = 8632.670055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.338 6.338 3 C 0.143 3.857 4 C -0.253 4.253 5 C -0.064 4.064 6 C -0.168 4.168 7 C 0.119 3.881 8 N -0.577 5.577 9 H 0.437 0.563 10 C 0.081 3.919 11 C -0.182 4.182 12 C -0.029 4.029 13 C 0.457 3.543 14 O -0.544 6.544 15 O -0.342 6.342 16 C 0.078 3.922 17 C -0.020 4.020 18 C -0.482 4.482 19 H 0.044 0.956 20 C 0.032 3.968 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.231 1.231 26 C 0.030 3.970 27 O -0.391 6.391 28 C 0.052 3.948 29 C -0.157 4.157 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.211 0.789 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.266 0.734 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 18.772 4.144 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.251 6.251 3 C 0.097 3.903 4 C -0.273 4.273 5 C -0.083 4.083 6 C -0.189 4.189 7 C 0.011 3.989 8 N -0.181 5.181 9 H 0.278 0.722 10 C -0.046 4.046 11 C -0.188 4.188 12 C -0.067 4.067 13 C 0.302 3.698 14 O -0.435 6.435 15 O -0.258 6.258 16 C 0.004 3.996 17 C -0.021 4.021 18 C -0.520 4.520 19 H 0.062 0.938 20 C -0.167 4.167 21 N -0.567 5.567 22 Si 0.731 3.269 23 H -0.190 1.190 24 H -0.223 1.223 25 H -0.155 1.155 26 C -0.046 4.046 27 O -0.310 6.310 28 C -0.024 4.024 29 C -0.162 4.162 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.228 0.772 37 H 0.117 0.883 38 H 0.163 0.837 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.584 18.584 3.810 21.723 hybrid contribution -1.150 0.453 -0.714 1.427 sum 9.434 19.037 3.097 21.471 Atomic orbital electron populations 1.23166 0.77220 1.04157 1.02297 1.86096 1.22797 1.27990 1.88242 1.18897 0.90775 0.84939 0.95680 1.21203 1.00535 0.92002 1.13582 1.20918 0.93822 0.97143 0.96424 1.20260 0.93180 0.96014 1.09417 1.18165 0.84322 0.93955 1.02469 1.41647 1.04833 1.07413 1.64201 0.72239 1.22048 0.99594 0.82047 1.00932 1.19626 0.92355 0.92523 1.14336 1.19580 1.06625 0.91577 0.88917 1.24455 0.71694 0.79958 0.93729 1.90555 1.48782 1.56578 1.47583 1.86589 1.79071 1.27645 1.32476 1.23546 0.99227 0.97497 0.79380 1.21609 0.96206 0.90251 0.94037 1.20433 0.91202 1.32603 1.07751 0.93757 1.25554 0.96298 0.95460 0.99432 1.70021 1.03244 1.48483 1.34998 0.86601 0.79485 0.78723 0.82097 1.18998 1.22289 1.15505 1.24347 0.96672 0.86745 0.96870 1.89528 1.61858 1.29695 1.49887 1.24068 0.95168 0.91883 0.91271 1.18672 0.90579 0.94727 1.12228 0.89212 0.90164 0.92306 0.84314 0.82356 0.82935 0.77198 0.88286 0.83704 0.90879 0.93955 0.92489 0.91410 0.88446 0.88360 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.81 113.37 1.11 1.90 16 2 O -0.34 -12.72 9.76 -92.18 -0.90 -13.62 16 3 C 0.14 4.83 6.72 22.69 0.15 4.98 16 4 C -0.25 -6.77 9.04 22.37 0.20 -6.57 16 5 C -0.06 -1.34 10.01 22.28 0.22 -1.12 16 6 C -0.17 -3.42 10.06 22.38 0.23 -3.20 16 7 C 0.12 2.97 7.27 39.02 0.28 3.26 16 8 N -0.58 -10.48 6.07 -187.59 -1.14 -11.62 16 9 H 0.44 4.18 8.96 -92.71 -0.83 3.35 16 10 C 0.08 1.66 11.74 82.98 0.97 2.63 16 11 C -0.18 -5.36 4.82 -18.64 -0.09 -5.45 16 12 C -0.03 -0.91 6.12 29.10 0.18 -0.73 16 13 C 0.46 18.22 7.94 71.23 0.57 18.78 16 14 O -0.54 -23.94 15.79 21.96 0.35 -23.59 16 15 O -0.34 -15.07 9.82 -51.47 -0.51 -15.58 16 16 C 0.08 3.39 4.46 71.98 0.32 3.72 16 17 C -0.02 -0.91 0.51 -52.23 -0.03 -0.94 16 18 C -0.48 -27.15 8.54 25.60 0.22 -26.93 16 19 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 20 C 0.03 1.82 5.46 84.65 0.46 2.28 16 21 N -0.93 -56.98 13.96 21.44 0.30 -56.68 16 22 Si 0.91 43.62 23.58 68.60 1.62 45.24 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.23 -10.13 4.66 99.48 0.46 -9.66 16 26 C 0.03 1.28 6.41 72.27 0.46 1.74 16 27 O -0.39 -17.03 12.40 -148.98 -1.85 -18.87 16 28 C 0.05 2.07 8.34 72.28 0.60 2.67 16 29 C -0.16 -5.08 6.30 -20.13 -0.13 -5.20 16 30 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 32 H 0.06 1.64 7.67 -2.39 -0.02 1.62 16 33 H 0.14 3.17 6.29 -2.91 -0.02 3.15 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.10 3.43 7.62 -2.39 -0.02 3.41 16 38 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.07 2.77 8.05 -2.38 -0.02 2.75 16 40 H 0.04 2.01 5.30 -2.39 -0.01 2.00 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.07 3.01 4.86 -2.38 -0.01 3.00 16 43 H 0.10 3.37 8.10 -2.39 -0.02 3.35 16 44 H 0.10 3.13 8.03 -2.38 -0.02 3.11 16 45 H 0.08 3.33 8.09 -2.38 -0.02 3.31 16 Total: -1.00 -80.50 371.26 3.58 -76.92 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.03 Total: 25.99 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.74 Total: -8.18 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.84 Total: -68.30 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -2.91 Total: -71.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.62 Total: 45.24 kcal Total: -80.50 3.58 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650487116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.150 kcal (2) G-P(sol) polarization free energy of solvation -80.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds