Wall clock time and date at job start Wed Apr 1 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00387 * 2 1 4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1 5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21603 * 120.00257 * 359.72088 * 6 5 4 8 8 C 1.47425 * 119.99743 * 179.72398 * 6 5 4 9 9 C 1.41291 * 126.41772 * 359.68438 * 8 6 5 10 10 N 1.30442 * 108.02749 * 179.85514 * 9 8 6 11 11 N 1.39928 * 108.89515 * 0.40754 * 10 9 8 12 12 C 1.46508 * 125.75566 * 179.73766 * 11 10 9 13 13 F 1.39892 * 109.47100 * 30.00053 * 12 11 10 14 14 F 1.39898 * 109.47160 * 150.00142 * 12 11 10 15 15 C 1.34258 * 108.49256 * 359.73579 * 11 10 9 16 16 C 1.46906 * 111.00013 * 236.04852 * 2 1 3 17 17 C 1.50704 * 109.46950 * 293.95692 * 16 2 1 18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 2 19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 2 20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20 26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20 27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20 28 28 H 1.09006 * 109.47151 * 59.99589 * 1 2 3 29 29 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47031 * 299.99782 * 1 2 3 31 31 H 1.08995 * 109.47478 * 306.05246 * 3 2 1 32 32 H 1.09006 * 109.47065 * 186.04643 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99875 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00419 * 4 3 2 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 36 36 H 1.08008 * 125.98679 * 0.02562 * 9 8 6 37 37 H 1.08998 * 109.46812 * 269.99933 * 12 11 10 38 38 H 1.07999 * 126.29316 * 180.02562 * 15 11 10 39 39 H 1.09007 * 109.46952 * 53.95217 * 16 2 1 40 40 H 1.08995 * 109.47632 * 173.95335 * 16 2 1 41 41 H 0.97000 * 120.00714 * 0.02562 * 19 17 16 42 42 H 0.97003 * 119.99431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9599 4.2223 2.3871 7 8 1.3432 3.8077 3.3497 8 6 2.4930 5.5967 2.3894 9 6 3.2301 6.2123 1.3530 10 7 3.5180 7.4276 1.7293 11 7 2.9949 7.6416 3.0093 12 6 3.1091 8.8793 3.7849 13 9 3.1734 9.9716 2.9132 14 9 1.9929 9.0125 4.6177 15 6 2.3707 6.5215 3.4070 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9730 18 8 1.0053 -2.5833 -0.0031 19 7 2.0179 -3.1179 -1.9034 20 6 1.6921 -4.4411 -1.7534 21 1 1.1298 -4.7643 -0.8898 22 6 2.0845 -5.3664 -2.7130 23 7 2.7683 -4.9731 -3.7640 24 14 1.6400 -7.1692 -2.5088 25 1 0.3271 -7.4312 -3.1517 26 1 2.6818 -8.0115 -3.1496 27 1 1.5576 -7.4981 -1.0631 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8308 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5013 2.1492 34 1 0.5473 2.0844 1.4266 35 1 2.6483 3.7558 0.5504 36 1 3.5045 5.7572 0.4127 37 1 4.0135 8.8454 4.3922 38 1 1.8654 6.3715 4.3496 39 1 1.5610 -0.3872 -2.0629 40 1 3.0796 -0.6611 -1.1758 41 1 2.5233 -2.8278 -2.6789 42 1 3.0426 -5.6191 -4.4336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690985429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:54 Heat of formation + Delta-G solvation = -70.198401 kcal Electronic energy + Delta-G solvation = -28367.458866 eV Core-core repulsion = 23635.109660 eV Total energy + Delta-G solvation = -4732.349206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.03162 -48.14355 -41.95601 -39.50776 -38.61089 -36.77849 -34.71531 -33.83182 -33.44564 -31.26284 -31.11741 -29.50183 -27.73428 -26.89351 -25.33131 -24.12397 -22.91286 -21.99160 -21.21741 -20.52833 -19.28727 -19.16249 -18.81947 -18.07776 -17.85086 -17.03166 -16.36969 -16.01674 -15.86731 -15.54634 -15.41574 -14.94727 -14.86916 -14.72921 -14.58925 -14.46815 -14.24140 -13.98551 -13.85553 -13.53549 -13.38468 -13.26982 -13.04128 -12.88031 -12.13010 -11.87961 -11.79572 -11.52082 -11.40700 -11.27168 -11.05336 -10.94032 -10.53169 -10.38560 -10.22311 -10.19270 -9.54020 -9.47572 -9.15793 -8.47939 -7.98798 -7.88959 -6.41690 -3.82324 0.76425 1.07279 1.57506 2.75848 2.85591 3.10754 3.18191 3.26577 3.27350 3.33342 3.71114 3.90312 3.98673 4.05849 4.17107 4.28365 4.53816 4.69995 4.81518 4.96336 5.11163 5.12764 5.25011 5.39312 5.62456 5.64544 5.69403 5.80675 5.84942 5.89566 5.93265 6.01192 6.21867 6.27954 6.56301 6.73532 7.18539 7.27953 7.33349 7.55626 8.01479 8.06629 8.61987 9.18507 9.54512 10.06411 10.76046 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.041379 B = 0.001408 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.512503 B =19877.962541 C =20323.762916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.723 5.723 6 C 0.594 3.406 7 O -0.542 6.542 8 C -0.276 4.276 9 C 0.096 3.904 10 N -0.274 5.274 11 N -0.431 5.431 12 C 0.512 3.488 13 F -0.169 7.169 14 F -0.177 7.177 15 C 0.144 3.856 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.015 0.985 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.200 0.800 37 H 0.162 0.838 38 H 0.197 0.803 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 29.002 9.848 30.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C 0.000 4.000 5 N -0.374 5.374 6 C 0.380 3.620 7 O -0.420 6.420 8 C -0.290 4.290 9 C -0.094 4.094 10 N -0.091 5.091 11 N -0.220 5.220 12 C 0.378 3.622 13 F -0.150 7.150 14 F -0.159 7.159 15 C -0.003 4.003 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.034 0.966 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.217 0.783 37 H 0.178 0.822 38 H 0.214 0.786 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.694 29.375 11.250 31.672 hybrid contribution -0.377 -0.761 -1.518 1.739 sum 3.317 28.614 9.732 30.405 Atomic orbital electron populations 1.22632 0.86460 1.04763 0.99153 1.61439 1.08965 1.10420 1.43091 1.22259 1.00799 0.89808 0.95648 1.21360 0.99709 0.80191 0.98749 1.45670 1.58116 1.14445 1.19181 1.17069 0.79118 0.83267 0.82519 1.90822 1.41560 1.75246 1.34326 1.20411 1.13800 0.97514 0.97296 1.24324 0.94840 0.90920 0.99317 1.77338 1.21217 1.18471 0.92118 1.49817 1.45138 1.11418 1.15674 1.21372 0.88454 0.72956 0.79381 1.93147 1.96637 1.53842 1.71406 1.93161 1.56968 1.94949 1.70786 1.23004 0.92630 0.84596 1.00067 1.21870 1.00683 0.94222 0.91640 1.19711 0.85529 0.86611 0.85273 1.90495 1.43855 1.80093 1.31569 1.41860 1.49454 1.07365 1.21426 1.19708 1.32945 0.82280 1.07899 0.87882 1.25254 0.96803 1.00562 0.95302 1.69612 1.38105 1.35770 1.10879 0.85860 0.77994 0.81748 0.78701 1.20450 1.20952 1.19395 0.96611 0.88386 0.91792 0.94500 0.90210 0.90035 0.90993 0.76799 0.78342 0.82196 0.78579 0.93340 0.89298 0.77508 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.51 -8.16 4.50 -244.36 -1.10 -9.26 16 3 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 4 C 0.12 1.39 5.60 -4.04 -0.02 1.37 16 5 N -0.72 -6.38 5.55 -61.38 -0.34 -6.72 16 6 C 0.59 6.36 7.81 -12.52 -0.10 6.26 16 7 O -0.54 -7.95 16.90 5.27 0.09 -7.86 16 8 C -0.28 -2.29 6.13 -105.07 -0.64 -2.93 16 9 C 0.10 0.64 11.50 -16.98 -0.20 0.45 16 10 N -0.27 -2.25 12.32 30.86 0.38 -1.87 16 11 N -0.43 -2.95 3.94 -66.09 -0.26 -3.21 16 12 C 0.51 2.11 6.62 59.85 0.40 2.51 16 13 F -0.17 -1.09 17.35 2.25 0.04 -1.05 16 14 F -0.18 -0.87 17.00 2.25 0.04 -0.83 16 15 C 0.14 1.04 10.84 -16.56 -0.18 0.86 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 17 C 0.44 10.24 7.47 -10.98 -0.08 10.16 16 18 O -0.58 -15.29 13.91 5.55 0.08 -15.22 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 30 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 33 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 34 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 35 H 0.40 2.21 7.43 -40.82 -0.30 1.91 16 36 H 0.20 0.61 7.50 -52.48 -0.39 0.21 16 37 H 0.16 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.05 0.75 8.12 -51.92 -0.42 0.33 16 40 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 41 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -36.16 373.05 -5.25 -41.42 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.87 Total: 7.91 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -0.57 Total: 12.84 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.65 Total: -58.71 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.17 Total: -23.08 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.08 Total: -1.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.16 -5.25 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690985429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.782 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds