Wall clock time and date at job start Wed Apr 1 2020 03:25:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46898 * 111.00387 * 2 1
4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1
5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2
6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3
7 7 O 1.21603 * 120.00257 * 359.72088 * 6 5 4
8 8 C 1.47425 * 119.99743 * 179.72398 * 6 5 4
9 9 C 1.41291 * 126.41772 * 359.68438 * 8 6 5
10 10 N 1.30442 * 108.02749 * 179.85514 * 9 8 6
11 11 N 1.39928 * 108.89515 * 0.40754 * 10 9 8
12 12 C 1.46508 * 125.75566 * 179.73766 * 11 10 9
13 13 F 1.39892 * 109.47100 * 30.00053 * 12 11 10
14 14 F 1.39898 * 109.47160 * 150.00142 * 12 11 10
15 15 C 1.34258 * 108.49256 * 359.73579 * 11 10 9
16 16 C 1.46906 * 111.00013 * 236.04852 * 2 1 3
17 17 C 1.50704 * 109.46950 * 293.95692 * 16 2 1
18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 2
19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 2
20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16
21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17
22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17
23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19
25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20
26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20
27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20
28 28 H 1.09006 * 109.47151 * 59.99589 * 1 2 3
29 29 H 1.09000 * 109.47496 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47031 * 299.99782 * 1 2 3
31 31 H 1.08995 * 109.47478 * 306.05246 * 3 2 1
32 32 H 1.09006 * 109.47065 * 186.04643 * 3 2 1
33 33 H 1.09009 * 109.46730 * 59.99875 * 4 3 2
34 34 H 1.08998 * 109.46846 * 300.00419 * 4 3 2
35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3
36 36 H 1.08008 * 125.98679 * 0.02562 * 9 8 6
37 37 H 1.08998 * 109.46812 * 269.99933 * 12 11 10
38 38 H 1.07999 * 126.29316 * 180.02562 * 15 11 10
39 39 H 1.09007 * 109.46952 * 53.95217 * 16 2 1
40 40 H 1.08995 * 109.47632 * 173.95335 * 16 2 1
41 41 H 0.97000 * 120.00714 * 0.02562 * 19 17 16
42 42 H 0.97003 * 119.99431 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6315 2.0574 1.3183
5 7 2.1561 3.4252 1.3181
6 6 1.9599 4.2223 2.3871
7 8 1.3432 3.8077 3.3497
8 6 2.4930 5.5967 2.3894
9 6 3.2301 6.2123 1.3530
10 7 3.5180 7.4276 1.7293
11 7 2.9949 7.6416 3.0093
12 6 3.1091 8.8793 3.7849
13 9 3.1734 9.9716 2.9132
14 9 1.9929 9.0125 4.6177
15 6 2.3707 6.5215 3.4070
16 6 1.9954 -0.7660 -1.1377
17 6 1.6368 -2.2204 -0.9730
18 8 1.0053 -2.5833 -0.0031
19 7 2.0179 -3.1179 -1.9034
20 6 1.6921 -4.4411 -1.7534
21 1 1.1298 -4.7643 -0.8898
22 6 2.0845 -5.3664 -2.7130
23 7 2.7683 -4.9731 -3.7640
24 14 1.6400 -7.1692 -2.5088
25 1 0.3271 -7.4312 -3.1517
26 1 2.6818 -8.0115 -3.1496
27 1 1.5576 -7.4981 -1.0631
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.5611 1.9274 -0.8308
32 1 3.0798 1.3443 -0.1083
33 1 2.0659 1.5013 2.1492
34 1 0.5473 2.0844 1.4266
35 1 2.6483 3.7558 0.5504
36 1 3.5045 5.7572 0.4127
37 1 4.0135 8.8454 4.3922
38 1 1.8654 6.3715 4.3496
39 1 1.5610 -0.3872 -2.0629
40 1 3.0796 -0.6611 -1.1758
41 1 2.5233 -2.8278 -2.6789
42 1 3.0426 -5.6191 -4.4336
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001690985429.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:25:54
Heat of formation + Delta-G solvation = -70.198401 kcal
Electronic energy + Delta-G solvation = -28367.458866 eV
Core-core repulsion = 23635.109660 eV
Total energy + Delta-G solvation = -4732.349206 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.140 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-50.03162 -48.14355 -41.95601 -39.50776 -38.61089 -36.77849 -34.71531 -33.83182
-33.44564 -31.26284 -31.11741 -29.50183 -27.73428 -26.89351 -25.33131 -24.12397
-22.91286 -21.99160 -21.21741 -20.52833 -19.28727 -19.16249 -18.81947 -18.07776
-17.85086 -17.03166 -16.36969 -16.01674 -15.86731 -15.54634 -15.41574 -14.94727
-14.86916 -14.72921 -14.58925 -14.46815 -14.24140 -13.98551 -13.85553 -13.53549
-13.38468 -13.26982 -13.04128 -12.88031 -12.13010 -11.87961 -11.79572 -11.52082
-11.40700 -11.27168 -11.05336 -10.94032 -10.53169 -10.38560 -10.22311 -10.19270
-9.54020 -9.47572 -9.15793 -8.47939 -7.98798 -7.88959 -6.41690 -3.82324
0.76425 1.07279 1.57506 2.75848 2.85591 3.10754 3.18191 3.26577
3.27350 3.33342 3.71114 3.90312 3.98673 4.05849 4.17107 4.28365
4.53816 4.69995 4.81518 4.96336 5.11163 5.12764 5.25011 5.39312
5.62456 5.64544 5.69403 5.80675 5.84942 5.89566 5.93265 6.01192
6.21867 6.27954 6.56301 6.73532 7.18539 7.27953 7.33349 7.55626
8.01479 8.06629 8.61987 9.18507 9.54512 10.06411 10.76046
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.041379 B = 0.001408 C = 0.001377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.512503 B =19877.962541 C =20323.762916
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.515 5.515
3 C 0.044 3.956
4 C 0.123 3.877
5 N -0.723 5.723
6 C 0.594 3.406
7 O -0.542 6.542
8 C -0.276 4.276
9 C 0.096 3.904
10 N -0.274 5.274
11 N -0.431 5.431
12 C 0.512 3.488
13 F -0.169 7.169
14 F -0.177 7.177
15 C 0.144 3.856
16 C 0.047 3.953
17 C 0.443 3.557
18 O -0.576 6.576
19 N -0.564 5.564
20 C -0.299 4.299
21 H 0.103 0.897
22 C 0.022 3.978
23 N -0.902 5.902
24 Si 0.930 3.070
25 H -0.278 1.278
26 H -0.284 1.284
27 H -0.269 1.269
28 H 0.015 0.985
29 H 0.098 0.902
30 H 0.063 0.937
31 H 0.037 0.963
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.072 0.928
35 H 0.398 0.602
36 H 0.200 0.800
37 H 0.162 0.838
38 H 0.197 0.803
39 H 0.049 0.951
40 H 0.089 0.911
41 H 0.392 0.608
42 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.786 29.002 9.848 30.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.239 5.239
3 C -0.085 4.085
4 C 0.000 4.000
5 N -0.374 5.374
6 C 0.380 3.620
7 O -0.420 6.420
8 C -0.290 4.290
9 C -0.094 4.094
10 N -0.091 5.091
11 N -0.220 5.220
12 C 0.378 3.622
13 F -0.150 7.150
14 F -0.159 7.159
15 C -0.003 4.003
16 C -0.084 4.084
17 C 0.229 3.771
18 O -0.460 6.460
19 N -0.201 5.201
20 C -0.428 4.428
21 H 0.121 0.879
22 C -0.179 4.179
23 N -0.544 5.544
24 Si 0.757 3.243
25 H -0.205 1.205
26 H -0.210 1.210
27 H -0.194 1.194
28 H 0.034 0.966
29 H 0.116 0.884
30 H 0.082 0.918
31 H 0.055 0.945
32 H 0.098 0.902
33 H 0.100 0.900
34 H 0.090 0.910
35 H 0.232 0.768
36 H 0.217 0.783
37 H 0.178 0.822
38 H 0.214 0.786
39 H 0.067 0.933
40 H 0.107 0.893
41 H 0.225 0.775
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 3.694 29.375 11.250 31.672
hybrid contribution -0.377 -0.761 -1.518 1.739
sum 3.317 28.614 9.732 30.405
Atomic orbital electron populations
1.22632 0.86460 1.04763 0.99153 1.61439 1.08965 1.10420 1.43091
1.22259 1.00799 0.89808 0.95648 1.21360 0.99709 0.80191 0.98749
1.45670 1.58116 1.14445 1.19181 1.17069 0.79118 0.83267 0.82519
1.90822 1.41560 1.75246 1.34326 1.20411 1.13800 0.97514 0.97296
1.24324 0.94840 0.90920 0.99317 1.77338 1.21217 1.18471 0.92118
1.49817 1.45138 1.11418 1.15674 1.21372 0.88454 0.72956 0.79381
1.93147 1.96637 1.53842 1.71406 1.93161 1.56968 1.94949 1.70786
1.23004 0.92630 0.84596 1.00067 1.21870 1.00683 0.94222 0.91640
1.19711 0.85529 0.86611 0.85273 1.90495 1.43855 1.80093 1.31569
1.41860 1.49454 1.07365 1.21426 1.19708 1.32945 0.82280 1.07899
0.87882 1.25254 0.96803 1.00562 0.95302 1.69612 1.38105 1.35770
1.10879 0.85860 0.77994 0.81748 0.78701 1.20450 1.20952 1.19395
0.96611 0.88386 0.91792 0.94500 0.90210 0.90035 0.90993 0.76799
0.78342 0.82196 0.78579 0.93340 0.89298 0.77508 0.91903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 8.96 60.06 0.54 0.82 16
2 N -0.51 -8.16 4.50 -244.36 -1.10 -9.26 16
3 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16
4 C 0.12 1.39 5.60 -4.04 -0.02 1.37 16
5 N -0.72 -6.38 5.55 -61.38 -0.34 -6.72 16
6 C 0.59 6.36 7.81 -12.52 -0.10 6.26 16
7 O -0.54 -7.95 16.90 5.27 0.09 -7.86 16
8 C -0.28 -2.29 6.13 -105.07 -0.64 -2.93 16
9 C 0.10 0.64 11.50 -16.98 -0.20 0.45 16
10 N -0.27 -2.25 12.32 30.86 0.38 -1.87 16
11 N -0.43 -2.95 3.94 -66.09 -0.26 -3.21 16
12 C 0.51 2.11 6.62 59.85 0.40 2.51 16
13 F -0.17 -1.09 17.35 2.25 0.04 -1.05 16
14 F -0.18 -0.87 17.00 2.25 0.04 -0.83 16
15 C 0.14 1.04 10.84 -16.56 -0.18 0.86 16
16 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16
17 C 0.44 10.24 7.47 -10.98 -0.08 10.16 16
18 O -0.58 -15.29 13.91 5.55 0.08 -15.22 16
19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16
20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16
21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16
24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16
25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
29 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16
30 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16
31 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16
32 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16
33 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16
34 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16
35 H 0.40 2.21 7.43 -40.82 -0.30 1.91 16
36 H 0.20 0.61 7.50 -52.48 -0.39 0.21 16
37 H 0.16 -0.03 8.14 -51.93 -0.42 -0.45 16
38 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16
39 H 0.05 0.75 8.12 -51.92 -0.42 0.33 16
40 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16
41 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16
42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16
LS Contribution 373.05 15.07 5.62 5.62
Total: -1.00 -36.16 373.05 -5.25 -41.42
By element:
Atomic # 1 Polarization: 12.77 SS G_CDS: -4.87 Total: 7.91 kcal
Atomic # 6 Polarization: 13.42 SS G_CDS: -0.57 Total: 12.84 kcal
Atomic # 7 Polarization: -58.06 SS G_CDS: -0.65 Total: -58.71 kcal
Atomic # 8 Polarization: -23.25 SS G_CDS: 0.17 Total: -23.08 kcal
Atomic # 9 Polarization: -1.96 SS G_CDS: 0.08 Total: -1.89 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -36.16 -5.25 -41.42 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690985429.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.782 kcal
(2) G-P(sol) polarization free energy of solvation -36.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds