Wall clock time and date at job start Wed Apr 1 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00387 * 2 1 4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1 5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21603 * 120.00257 * 359.72088 * 6 5 4 8 8 C 1.47425 * 119.99743 * 179.72398 * 6 5 4 9 9 C 1.41291 * 126.41772 * 359.68438 * 8 6 5 10 10 N 1.30442 * 108.02749 * 179.85514 * 9 8 6 11 11 N 1.39928 * 108.89515 * 0.40754 * 10 9 8 12 12 C 1.46508 * 125.75566 * 179.73766 * 11 10 9 13 13 F 1.39892 * 109.47100 * 30.00053 * 12 11 10 14 14 F 1.39898 * 109.47160 * 150.00142 * 12 11 10 15 15 C 1.34258 * 108.49256 * 359.73579 * 11 10 9 16 16 C 1.46906 * 111.00013 * 236.04852 * 2 1 3 17 17 C 1.50704 * 109.46950 * 293.95692 * 16 2 1 18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 2 19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 2 20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20 26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20 27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20 28 28 H 1.09006 * 109.47151 * 59.99589 * 1 2 3 29 29 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47031 * 299.99782 * 1 2 3 31 31 H 1.08995 * 109.47478 * 306.05246 * 3 2 1 32 32 H 1.09006 * 109.47065 * 186.04643 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99875 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00419 * 4 3 2 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 36 36 H 1.08008 * 125.98679 * 0.02562 * 9 8 6 37 37 H 1.08998 * 109.46812 * 269.99933 * 12 11 10 38 38 H 1.07999 * 126.29316 * 180.02562 * 15 11 10 39 39 H 1.09007 * 109.46952 * 53.95217 * 16 2 1 40 40 H 1.08995 * 109.47632 * 173.95335 * 16 2 1 41 41 H 0.97000 * 120.00714 * 0.02562 * 19 17 16 42 42 H 0.97003 * 119.99431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9599 4.2223 2.3871 7 8 1.3432 3.8077 3.3497 8 6 2.4930 5.5967 2.3894 9 6 3.2301 6.2123 1.3530 10 7 3.5180 7.4276 1.7293 11 7 2.9949 7.6416 3.0093 12 6 3.1091 8.8793 3.7849 13 9 3.1734 9.9716 2.9132 14 9 1.9929 9.0125 4.6177 15 6 2.3707 6.5215 3.4070 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9730 18 8 1.0053 -2.5833 -0.0031 19 7 2.0179 -3.1179 -1.9034 20 6 1.6921 -4.4411 -1.7534 21 1 1.1298 -4.7643 -0.8898 22 6 2.0845 -5.3664 -2.7130 23 7 2.7683 -4.9731 -3.7640 24 14 1.6400 -7.1692 -2.5088 25 1 0.3271 -7.4312 -3.1517 26 1 2.6818 -8.0115 -3.1496 27 1 1.5576 -7.4981 -1.0631 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8308 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5013 2.1492 34 1 0.5473 2.0844 1.4266 35 1 2.6483 3.7558 0.5504 36 1 3.5045 5.7572 0.4127 37 1 4.0135 8.8454 4.3922 38 1 1.8654 6.3715 4.3496 39 1 1.5610 -0.3872 -2.0629 40 1 3.0796 -0.6611 -1.1758 41 1 2.5233 -2.8278 -2.6789 42 1 3.0426 -5.6191 -4.4336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690985429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:53 Heat of formation + Delta-G solvation = -100.054970 kcal Electronic energy + Delta-G solvation = -28368.753544 eV Core-core repulsion = 23635.109660 eV Total energy + Delta-G solvation = -4733.643884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.39641 -48.52521 -42.49866 -40.49930 -40.13687 -38.10889 -35.98996 -35.48796 -33.97257 -33.24510 -31.78136 -30.50070 -29.06413 -27.46628 -26.86464 -25.40791 -23.72078 -22.56353 -22.15944 -21.27175 -20.91872 -19.85412 -19.81195 -19.14007 -18.51307 -17.84385 -17.52286 -17.21812 -16.86387 -16.53594 -16.32403 -16.14212 -15.91056 -15.79142 -15.39400 -15.28745 -15.15802 -15.00725 -14.86341 -14.71933 -14.33253 -14.24141 -13.95909 -13.73634 -13.42653 -13.28814 -13.01480 -12.87265 -12.53767 -12.52613 -12.40275 -12.36467 -12.12696 -12.05021 -11.43119 -11.07829 -11.02129 -10.27586 -10.24582 -9.96295 -9.88378 -9.19340 -8.43766 -5.91717 0.20812 0.65911 1.01505 1.39659 1.43545 1.55897 2.04377 2.10237 2.32660 2.36832 2.52725 2.79924 3.00872 3.23661 3.47190 3.48819 3.54153 3.73494 3.89900 3.97288 4.13350 4.19792 4.29824 4.40731 4.51976 4.55740 4.57289 4.68882 4.69334 4.93159 5.02037 5.18996 5.25742 5.30438 5.40597 5.44449 5.89188 6.08400 6.21569 6.22782 6.58965 6.65009 7.17115 7.26039 7.61208 8.17802 8.73535 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.041379 B = 0.001408 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.512503 B =19877.962541 C =20323.762916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.052 3.948 4 C 0.132 3.868 5 N -0.707 5.707 6 C 0.594 3.406 7 O -0.590 6.590 8 C -0.295 4.295 9 C 0.108 3.892 10 N -0.301 5.301 11 N -0.432 5.432 12 C 0.506 3.494 13 F -0.184 7.184 14 F -0.183 7.183 15 C 0.148 3.852 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.417 0.583 36 H 0.232 0.768 37 H 0.209 0.791 38 H 0.209 0.791 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.397 0.603 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.999 30.514 8.954 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.007 3.993 5 N -0.359 5.359 6 C 0.382 3.618 7 O -0.471 6.471 8 C -0.309 4.309 9 C -0.082 4.082 10 N -0.119 5.119 11 N -0.221 5.221 12 C 0.374 3.626 13 F -0.165 7.165 14 F -0.165 7.165 15 C 0.000 4.000 16 C -0.070 4.070 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.200 1.200 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.255 0.745 36 H 0.248 0.752 37 H 0.225 0.775 38 H 0.225 0.775 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.231 0.769 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.944 30.945 10.307 32.989 hybrid contribution -0.777 -1.139 -1.175 1.812 sum 4.167 29.807 9.131 31.451 Atomic orbital electron populations 1.22469 0.86968 1.02333 1.00637 1.61323 1.08836 1.13278 1.42994 1.22268 1.02011 0.87278 0.96066 1.21099 0.98795 0.81152 0.98211 1.45444 1.57643 1.13271 1.19525 1.17393 0.78316 0.84066 0.82003 1.90798 1.43873 1.76322 1.36141 1.20275 1.15353 0.96584 0.98690 1.24810 0.93378 0.90172 0.99854 1.77308 1.22337 1.19266 0.92954 1.50058 1.44532 1.11965 1.15519 1.22194 0.89698 0.71571 0.79103 1.93114 1.96711 1.54592 1.72124 1.93149 1.57703 1.94875 1.70746 1.23260 0.91825 0.84656 1.00297 1.21739 1.02407 0.89796 0.93088 1.20869 0.83654 0.88978 0.83816 1.90477 1.45180 1.81512 1.33053 1.41922 1.50152 1.06961 1.22211 1.19644 1.34376 0.84201 1.07967 0.90471 1.25977 0.96320 1.04116 0.94730 1.69665 1.38185 1.37089 1.11147 0.84965 0.78205 0.77097 0.78289 1.19734 1.19573 1.19964 0.94660 0.92662 0.90773 0.91913 0.88068 0.92401 0.92348 0.74543 0.75151 0.77455 0.77467 0.90924 0.86603 0.76943 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.96 127.69 1.14 1.89 16 2 N -0.54 -16.22 4.50 -927.03 -4.17 -20.39 16 3 C 0.05 0.99 5.07 86.30 0.44 1.43 16 4 C 0.13 2.79 5.60 86.38 0.48 3.27 16 5 N -0.71 -11.06 5.55 -466.36 -2.59 -13.64 16 6 C 0.59 12.16 7.81 86.66 0.68 12.84 16 7 O -0.59 -17.49 16.90 -4.04 -0.07 -17.55 16 8 C -0.29 -4.45 6.13 -20.15 -0.12 -4.57 16 9 C 0.11 1.18 11.50 85.65 0.99 2.17 16 10 N -0.30 -4.36 12.32 -56.27 -0.69 -5.05 16 11 N -0.43 -5.18 3.94 -363.02 -1.43 -6.61 16 12 C 0.51 3.26 6.62 127.77 0.85 4.11 16 13 F -0.18 -2.14 17.35 44.97 0.78 -1.36 16 14 F -0.18 -1.56 17.00 44.97 0.76 -0.80 16 15 C 0.15 1.95 10.84 84.28 0.91 2.87 16 16 C 0.06 1.94 5.45 85.56 0.47 2.41 16 17 C 0.44 20.43 7.47 87.66 0.66 21.09 16 18 O -0.62 -33.77 13.91 -3.07 -0.04 -33.81 16 19 N -0.57 -28.95 5.29 -306.98 -1.62 -30.57 16 20 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 2.21 5.82 -2.39 -0.01 2.20 16 30 H 0.07 2.10 6.47 -2.39 -0.02 2.09 16 31 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 32 H 0.10 1.57 7.93 -2.38 -0.02 1.55 16 33 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.41 6.55 -2.39 -0.02 1.39 16 35 H 0.42 3.24 7.43 -92.71 -0.69 2.55 16 36 H 0.23 0.59 7.50 -2.91 -0.02 0.57 16 37 H 0.21 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 40 H 0.12 3.12 7.93 -2.39 -0.02 3.10 16 41 H 0.40 18.79 7.90 -92.71 -0.73 18.05 16 42 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -81.44 373.05 0.69 -80.75 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.32 Total: 23.52 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.77 Total: 29.41 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -10.22 Total: -125.02 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.11 Total: -51.36 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 1.54 Total: -2.16 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -81.44 0.69 -80.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690985429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.302 kcal (2) G-P(sol) polarization free energy of solvation -81.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds