Wall clock time and date at job start Wed Apr 1 2020 03:25:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46894 * 1
3 3 C 1.46898 * 111.00387 * 2 1
4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1
5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2
6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3
7 7 O 1.21603 * 120.00257 * 359.72088 * 6 5 4
8 8 C 1.47425 * 119.99743 * 179.72398 * 6 5 4
9 9 C 1.41291 * 126.41772 * 359.68438 * 8 6 5
10 10 N 1.30442 * 108.02749 * 179.85514 * 9 8 6
11 11 N 1.39928 * 108.89515 * 0.40754 * 10 9 8
12 12 C 1.46508 * 125.75566 * 179.73766 * 11 10 9
13 13 F 1.39892 * 109.47100 * 30.00053 * 12 11 10
14 14 F 1.39898 * 109.47160 * 150.00142 * 12 11 10
15 15 C 1.34258 * 108.49256 * 359.73579 * 11 10 9
16 16 C 1.46906 * 111.00013 * 236.04852 * 2 1 3
17 17 C 1.50704 * 109.46950 * 293.95692 * 16 2 1
18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 2
19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 2
20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16
21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17
22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17
23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19
25 25 H 1.48511 * 109.47058 * 90.00564 * 24 22 20
26 26 H 1.48500 * 109.47028 * 210.00460 * 24 22 20
27 27 H 1.48494 * 109.47364 * 330.00781 * 24 22 20
28 28 H 1.09006 * 109.47151 * 59.99589 * 1 2 3
29 29 H 1.09000 * 109.47496 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47031 * 299.99782 * 1 2 3
31 31 H 1.08995 * 109.47478 * 306.05246 * 3 2 1
32 32 H 1.09006 * 109.47065 * 186.04643 * 3 2 1
33 33 H 1.09009 * 109.46730 * 59.99875 * 4 3 2
34 34 H 1.08998 * 109.46846 * 300.00419 * 4 3 2
35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3
36 36 H 1.08008 * 125.98679 * 0.02562 * 9 8 6
37 37 H 1.08998 * 109.46812 * 269.99933 * 12 11 10
38 38 H 1.07999 * 126.29316 * 180.02562 * 15 11 10
39 39 H 1.09007 * 109.46952 * 53.95217 * 16 2 1
40 40 H 1.08995 * 109.47632 * 173.95335 * 16 2 1
41 41 H 0.97000 * 120.00714 * 0.02562 * 19 17 16
42 42 H 0.97003 * 119.99431 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6315 2.0574 1.3183
5 7 2.1561 3.4252 1.3181
6 6 1.9599 4.2223 2.3871
7 8 1.3432 3.8077 3.3497
8 6 2.4930 5.5967 2.3894
9 6 3.2301 6.2123 1.3530
10 7 3.5180 7.4276 1.7293
11 7 2.9949 7.6416 3.0093
12 6 3.1091 8.8793 3.7849
13 9 3.1734 9.9716 2.9132
14 9 1.9929 9.0125 4.6177
15 6 2.3707 6.5215 3.4070
16 6 1.9954 -0.7660 -1.1377
17 6 1.6368 -2.2204 -0.9730
18 8 1.0053 -2.5833 -0.0031
19 7 2.0179 -3.1179 -1.9034
20 6 1.6921 -4.4411 -1.7534
21 1 1.1298 -4.7643 -0.8898
22 6 2.0845 -5.3664 -2.7130
23 7 2.7683 -4.9731 -3.7640
24 14 1.6400 -7.1692 -2.5088
25 1 0.3271 -7.4312 -3.1517
26 1 2.6818 -8.0115 -3.1496
27 1 1.5576 -7.4981 -1.0631
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.5611 1.9274 -0.8308
32 1 3.0798 1.3443 -0.1083
33 1 2.0659 1.5013 2.1492
34 1 0.5473 2.0844 1.4266
35 1 2.6483 3.7558 0.5504
36 1 3.5045 5.7572 0.4127
37 1 4.0135 8.8454 4.3922
38 1 1.8654 6.3715 4.3496
39 1 1.5610 -0.3872 -2.0629
40 1 3.0796 -0.6611 -1.1758
41 1 2.5233 -2.8278 -2.6789
42 1 3.0426 -5.6191 -4.4336
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001690985429.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:25:53
Heat of formation + Delta-G solvation = -100.054970 kcal
Electronic energy + Delta-G solvation = -28368.753544 eV
Core-core repulsion = 23635.109660 eV
Total energy + Delta-G solvation = -4733.643884 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.140 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-50.39641 -48.52521 -42.49866 -40.49930 -40.13687 -38.10889 -35.98996 -35.48796
-33.97257 -33.24510 -31.78136 -30.50070 -29.06413 -27.46628 -26.86464 -25.40791
-23.72078 -22.56353 -22.15944 -21.27175 -20.91872 -19.85412 -19.81195 -19.14007
-18.51307 -17.84385 -17.52286 -17.21812 -16.86387 -16.53594 -16.32403 -16.14212
-15.91056 -15.79142 -15.39400 -15.28745 -15.15802 -15.00725 -14.86341 -14.71933
-14.33253 -14.24141 -13.95909 -13.73634 -13.42653 -13.28814 -13.01480 -12.87265
-12.53767 -12.52613 -12.40275 -12.36467 -12.12696 -12.05021 -11.43119 -11.07829
-11.02129 -10.27586 -10.24582 -9.96295 -9.88378 -9.19340 -8.43766 -5.91717
0.20812 0.65911 1.01505 1.39659 1.43545 1.55897 2.04377 2.10237
2.32660 2.36832 2.52725 2.79924 3.00872 3.23661 3.47190 3.48819
3.54153 3.73494 3.89900 3.97288 4.13350 4.19792 4.29824 4.40731
4.51976 4.55740 4.57289 4.68882 4.69334 4.93159 5.02037 5.18996
5.25742 5.30438 5.40597 5.44449 5.89188 6.08400 6.21569 6.22782
6.58965 6.65009 7.17115 7.26039 7.61208 8.17802 8.73535
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.041379 B = 0.001408 C = 0.001377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.512503 B =19877.962541 C =20323.762916
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.539 5.539
3 C 0.052 3.948
4 C 0.132 3.868
5 N -0.707 5.707
6 C 0.594 3.406
7 O -0.590 6.590
8 C -0.295 4.295
9 C 0.108 3.892
10 N -0.301 5.301
11 N -0.432 5.432
12 C 0.506 3.494
13 F -0.184 7.184
14 F -0.183 7.183
15 C 0.148 3.852
16 C 0.061 3.939
17 C 0.439 3.561
18 O -0.616 6.616
19 N -0.575 5.575
20 C -0.332 4.332
21 H 0.077 0.923
22 C -0.012 4.012
23 N -0.920 5.920
24 Si 0.990 3.010
25 H -0.272 1.272
26 H -0.271 1.271
27 H -0.275 1.275
28 H 0.035 0.965
29 H 0.055 0.945
30 H 0.074 0.926
31 H 0.063 0.937
32 H 0.101 0.899
33 H 0.058 0.942
34 H 0.058 0.942
35 H 0.417 0.583
36 H 0.232 0.768
37 H 0.209 0.791
38 H 0.209 0.791
39 H 0.073 0.927
40 H 0.116 0.884
41 H 0.397 0.603
42 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.999 30.514 8.954 32.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.264 5.264
3 C -0.076 4.076
4 C 0.007 3.993
5 N -0.359 5.359
6 C 0.382 3.618
7 O -0.471 6.471
8 C -0.309 4.309
9 C -0.082 4.082
10 N -0.119 5.119
11 N -0.221 5.221
12 C 0.374 3.626
13 F -0.165 7.165
14 F -0.165 7.165
15 C 0.000 4.000
16 C -0.070 4.070
17 C 0.227 3.773
18 O -0.502 6.502
19 N -0.212 5.212
20 C -0.462 4.462
21 H 0.095 0.905
22 C -0.211 4.211
23 N -0.561 5.561
24 Si 0.814 3.186
25 H -0.197 1.197
26 H -0.196 1.196
27 H -0.200 1.200
28 H 0.053 0.947
29 H 0.073 0.927
30 H 0.092 0.908
31 H 0.081 0.919
32 H 0.119 0.881
33 H 0.076 0.924
34 H 0.077 0.923
35 H 0.255 0.745
36 H 0.248 0.752
37 H 0.225 0.775
38 H 0.225 0.775
39 H 0.091 0.909
40 H 0.134 0.866
41 H 0.231 0.769
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 4.944 30.945 10.307 32.989
hybrid contribution -0.777 -1.139 -1.175 1.812
sum 4.167 29.807 9.131 31.451
Atomic orbital electron populations
1.22469 0.86968 1.02333 1.00637 1.61323 1.08836 1.13278 1.42994
1.22268 1.02011 0.87278 0.96066 1.21099 0.98795 0.81152 0.98211
1.45444 1.57643 1.13271 1.19525 1.17393 0.78316 0.84066 0.82003
1.90798 1.43873 1.76322 1.36141 1.20275 1.15353 0.96584 0.98690
1.24810 0.93378 0.90172 0.99854 1.77308 1.22337 1.19266 0.92954
1.50058 1.44532 1.11965 1.15519 1.22194 0.89698 0.71571 0.79103
1.93114 1.96711 1.54592 1.72124 1.93149 1.57703 1.94875 1.70746
1.23260 0.91825 0.84656 1.00297 1.21739 1.02407 0.89796 0.93088
1.20869 0.83654 0.88978 0.83816 1.90477 1.45180 1.81512 1.33053
1.41922 1.50152 1.06961 1.22211 1.19644 1.34376 0.84201 1.07967
0.90471 1.25977 0.96320 1.04116 0.94730 1.69665 1.38185 1.37089
1.11147 0.84965 0.78205 0.77097 0.78289 1.19734 1.19573 1.19964
0.94660 0.92662 0.90773 0.91913 0.88068 0.92401 0.92348 0.74543
0.75151 0.77455 0.77467 0.90924 0.86603 0.76943 0.91375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.74 8.96 127.69 1.14 1.89 16
2 N -0.54 -16.22 4.50 -927.03 -4.17 -20.39 16
3 C 0.05 0.99 5.07 86.30 0.44 1.43 16
4 C 0.13 2.79 5.60 86.38 0.48 3.27 16
5 N -0.71 -11.06 5.55 -466.36 -2.59 -13.64 16
6 C 0.59 12.16 7.81 86.66 0.68 12.84 16
7 O -0.59 -17.49 16.90 -4.04 -0.07 -17.55 16
8 C -0.29 -4.45 6.13 -20.15 -0.12 -4.57 16
9 C 0.11 1.18 11.50 85.65 0.99 2.17 16
10 N -0.30 -4.36 12.32 -56.27 -0.69 -5.05 16
11 N -0.43 -5.18 3.94 -363.02 -1.43 -6.61 16
12 C 0.51 3.26 6.62 127.77 0.85 4.11 16
13 F -0.18 -2.14 17.35 44.97 0.78 -1.36 16
14 F -0.18 -1.56 17.00 44.97 0.76 -0.80 16
15 C 0.15 1.95 10.84 84.28 0.91 2.87 16
16 C 0.06 1.94 5.45 85.56 0.47 2.41 16
17 C 0.44 20.43 7.47 87.66 0.66 21.09 16
18 O -0.62 -33.77 13.91 -3.07 -0.04 -33.81 16
19 N -0.57 -28.95 5.29 -306.98 -1.62 -30.57 16
20 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16
21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16
22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
23 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16
24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16
25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
28 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16
29 H 0.05 2.21 5.82 -2.39 -0.01 2.20 16
30 H 0.07 2.10 6.47 -2.39 -0.02 2.09 16
31 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16
32 H 0.10 1.57 7.93 -2.38 -0.02 1.55 16
33 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
34 H 0.06 1.41 6.55 -2.39 -0.02 1.39 16
35 H 0.42 3.24 7.43 -92.71 -0.69 2.55 16
36 H 0.23 0.59 7.50 -2.91 -0.02 0.57 16
37 H 0.21 -0.68 8.14 -2.39 -0.02 -0.70 16
38 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16
39 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16
40 H 0.12 3.12 7.93 -2.39 -0.02 3.10 16
41 H 0.40 18.79 7.90 -92.71 -0.73 18.05 16
42 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16
Total: -1.00 -81.44 373.05 0.69 -80.75
By element:
Atomic # 1 Polarization: 23.84 SS G_CDS: -0.32 Total: 23.52 kcal
Atomic # 6 Polarization: 21.64 SS G_CDS: 7.77 Total: 29.41 kcal
Atomic # 7 Polarization: -114.79 SS G_CDS: -10.22 Total: -125.02 kcal
Atomic # 8 Polarization: -51.25 SS G_CDS: -0.11 Total: -51.36 kcal
Atomic # 9 Polarization: -3.71 SS G_CDS: 1.54 Total: -2.16 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal
Total: -81.44 0.69 -80.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001690985429.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.302 kcal
(2) G-P(sol) polarization free energy of solvation -81.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds