Wall clock time and date at job start Wed Apr 1 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47159 * 2 1 4 4 C 1.52998 * 109.47051 * 119.99724 * 2 1 3 5 5 N 1.46497 * 109.47348 * 174.99994 * 4 2 1 6 6 C 1.34773 * 120.00047 * 180.02562 * 5 4 2 7 7 O 1.21607 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.47432 * 120.00055 * 180.02562 * 6 5 4 9 9 C 1.41289 * 126.41284 * 359.97438 * 8 6 5 10 10 N 1.30450 * 108.02134 * 179.72257 * 9 8 6 11 11 N 1.39934 * 108.89830 * 0.43636 * 10 9 8 12 12 C 1.46496 * 125.75688 * 179.81554 * 11 10 9 13 13 F 1.39905 * 109.47025 * 329.69234 * 12 11 10 14 14 F 1.39900 * 109.47180 * 209.69602 * 12 11 10 15 15 C 1.34262 * 108.48873 * 359.55252 * 11 10 9 16 16 N 1.46903 * 109.47088 * 239.99865 * 2 1 3 17 17 C 1.46897 * 110.99944 * 85.00430 * 16 2 1 18 18 C 1.50702 * 109.46842 * 179.97438 * 17 16 2 19 19 O 1.21288 * 119.99978 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99669 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99862 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99758 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00357 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00286 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99542 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47291 * 89.99485 * 25 23 21 27 27 H 1.48502 * 109.46954 * 209.99565 * 25 23 21 28 28 H 1.48500 * 109.47191 * 329.99239 * 25 23 21 29 29 H 1.09002 * 109.47149 * 300.00627 * 1 2 3 30 30 H 1.09005 * 109.46705 * 59.99963 * 1 2 3 31 31 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47075 * 54.99538 * 4 2 1 33 33 H 1.09002 * 109.47095 * 295.00418 * 4 2 1 34 34 H 0.97000 * 119.99798 * 359.97438 * 5 4 2 35 35 H 1.08004 * 125.98870 * 359.97438 * 9 8 6 36 36 H 1.09004 * 109.47223 * 89.69320 * 12 11 10 37 37 H 1.07997 * 126.29178 * 180.26352 * 15 11 10 38 38 H 1.00904 * 110.99933 * 321.04539 * 16 2 1 39 39 H 1.09001 * 109.46614 * 299.99745 * 17 16 2 40 40 H 1.08997 * 109.47581 * 59.99787 * 17 16 2 41 41 H 0.97002 * 120.00150 * 0.02562 * 20 18 17 42 42 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4291 2.1908 7 8 3.5681 -1.8853 3.1421 8 6 5.6423 -1.5344 2.1321 9 6 6.4769 -1.0545 1.0980 10 7 7.7115 -1.3331 1.4138 11 7 7.7250 -2.0036 2.6419 12 6 8.9183 -2.4905 3.3384 13 9 9.9002 -2.8283 2.4008 14 9 8.5883 -3.6198 4.0954 15 6 6.4603 -2.1204 3.0772 16 7 2.0197 -0.6925 -1.1994 17 6 2.0826 0.2225 -2.3469 18 6 2.5886 -0.5217 -3.5556 19 8 2.8697 -1.6984 -3.4696 20 7 2.7288 0.1205 -4.7324 21 6 3.1897 -0.5564 -5.8319 22 1 3.4400 -1.6042 -5.7553 23 6 3.3338 0.1054 -7.0452 24 7 3.7750 -0.5435 -8.0992 25 14 2.9002 1.9175 -7.1778 26 1 4.0998 2.7373 -6.8715 27 1 2.4357 2.2157 -8.5564 28 1 1.8202 2.2402 -6.2110 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 6.1502 -0.5428 0.2048 36 1 9.2984 -1.7097 3.9973 37 1 6.1415 -2.5869 3.9975 38 1 1.4496 -1.4980 -1.4100 39 1 1.0872 0.6162 -2.5525 40 1 2.7589 1.0461 -2.1182 41 1 2.5044 1.0617 -4.8011 42 1 3.8760 -0.0814 -8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714286036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:46 Heat of formation + Delta-G solvation = -77.969831 kcal Electronic energy + Delta-G solvation = -29220.674459 eV Core-core repulsion = 24487.988259 eV Total energy + Delta-G solvation = -4732.686200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.82657 -47.93621 -41.68606 -39.36756 -38.56698 -36.99066 -34.23482 -33.86321 -33.15276 -31.72267 -31.07764 -30.52041 -27.31056 -26.58296 -25.83484 -23.80257 -22.84963 -21.76255 -21.06106 -20.24621 -19.44641 -19.02721 -18.61654 -18.41718 -17.85771 -16.89756 -16.21814 -16.03961 -15.64381 -15.39024 -15.17588 -15.04255 -14.88083 -14.70102 -14.43924 -14.24241 -14.17831 -13.96400 -13.62374 -13.33567 -13.17772 -13.03927 -12.81891 -12.66883 -12.53808 -12.42101 -12.16819 -11.80822 -11.59834 -11.49880 -11.19567 -11.07462 -10.62688 -10.25032 -10.00407 -9.98014 -9.60442 -9.30258 -8.92342 -8.66164 -8.26277 -8.20222 -6.33710 -3.85455 1.00057 1.32501 1.86697 2.95206 2.99197 3.03988 3.12718 3.15242 3.34933 3.52639 3.69700 3.90749 3.99411 4.07686 4.21580 4.48377 4.68480 4.76088 4.83047 4.93923 4.96336 5.10931 5.19398 5.33704 5.42524 5.51843 5.56507 5.66527 5.75199 5.84605 5.88944 5.94349 5.98193 6.07333 6.45897 6.98339 7.02137 7.46454 7.54820 7.59524 8.11584 8.25527 8.56368 8.92279 9.39329 9.79018 10.79373 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.002409 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.993668 B =11622.692344 C =13805.899272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.085 0.915 4 C 0.136 3.864 5 N -0.706 5.706 6 C 0.594 3.406 7 O -0.557 6.557 8 C -0.273 4.273 9 C 0.102 3.898 10 N -0.273 5.273 11 N -0.433 5.433 12 C 0.512 3.488 13 F -0.169 7.169 14 F -0.179 7.179 15 C 0.139 3.861 16 N -0.664 5.664 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.202 0.798 36 H 0.160 0.840 37 H 0.195 0.805 38 H 0.355 0.645 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 4.852 24.916 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.012 3.988 5 N -0.356 5.356 6 C 0.380 3.620 7 O -0.437 6.437 8 C -0.288 4.288 9 C -0.089 4.089 10 N -0.090 5.090 11 N -0.223 5.223 12 C 0.378 3.622 13 F -0.150 7.150 14 F -0.160 7.160 15 C -0.008 4.008 16 N -0.297 5.297 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.245 0.755 35 H 0.219 0.781 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.176 0.824 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.963 3.778 25.285 26.043 hybrid contribution -1.844 1.456 -0.864 2.503 sum 3.120 5.234 24.421 25.169 Atomic orbital electron populations 1.22437 0.96176 1.02851 1.02604 1.21869 0.93438 0.98320 0.90704 0.89718 1.21324 0.79853 1.01067 0.96582 1.45535 1.07689 1.59210 1.23183 1.17101 0.85065 0.77510 0.82292 1.90766 1.69705 1.49248 1.33988 1.20410 0.94777 1.14814 0.98769 1.24420 0.89192 0.96612 0.98636 1.77389 1.21538 1.15250 0.94848 1.49810 1.06325 1.46940 1.19185 1.21326 0.75348 0.84665 0.80818 1.93156 1.60950 1.93297 1.67587 1.93150 1.92525 1.55193 1.75172 1.22933 0.82560 0.95692 0.99594 1.60179 1.57895 1.09171 1.02436 1.21759 1.00118 0.95757 0.90988 1.19706 0.84898 0.88277 0.83777 1.90584 1.53748 1.15961 1.84216 1.42213 1.60026 1.11127 1.09578 1.19425 1.40148 0.98046 0.85802 0.86285 1.25046 0.97466 0.98402 0.95249 1.69621 1.44995 1.36558 1.00862 0.86669 0.78976 0.85156 0.78540 1.19582 1.20217 1.19556 0.91777 0.91996 0.91859 0.91371 0.91231 0.75524 0.78137 0.82386 0.78812 0.82410 0.93586 0.89465 0.79726 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.16 37.16 0.34 -1.16 16 2 C 0.07 0.64 2.75 -67.71 -0.19 0.45 16 3 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 4 C 0.14 1.39 5.37 -4.04 -0.02 1.37 16 5 N -0.71 -7.80 5.38 -61.38 -0.33 -8.13 16 6 C 0.59 7.52 7.81 -12.52 -0.10 7.42 16 7 O -0.56 -8.62 16.90 5.27 0.09 -8.53 16 8 C -0.27 -3.06 6.13 -105.07 -0.64 -3.70 16 9 C 0.10 1.10 11.50 -16.98 -0.20 0.90 16 10 N -0.27 -3.22 12.32 30.86 0.38 -2.84 16 11 N -0.43 -4.16 3.94 -66.09 -0.26 -4.42 16 12 C 0.51 3.32 6.62 59.84 0.40 3.72 16 13 F -0.17 -1.55 17.35 2.25 0.04 -1.51 16 14 F -0.18 -1.25 17.00 2.25 0.04 -1.21 16 15 C 0.14 1.34 10.84 -16.56 -0.18 1.16 16 16 N -0.66 -8.61 5.31 -107.99 -0.57 -9.18 16 17 C 0.05 0.67 5.97 -4.98 -0.03 0.64 16 18 C 0.45 9.46 7.82 -10.98 -0.09 9.38 16 19 O -0.56 -14.39 15.78 5.55 0.09 -14.30 16 20 N -0.59 -13.39 5.09 -10.96 -0.06 -13.45 16 21 C -0.31 -8.43 10.16 -14.94 -0.15 -8.58 16 22 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 25 Si 0.88 18.87 27.74 -169.99 -4.71 14.15 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.41 4.23 7.09 -40.82 -0.29 3.94 16 35 H 0.20 1.74 7.50 -52.48 -0.39 1.35 16 36 H 0.16 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.36 5.11 8.17 -39.29 -0.32 4.79 16 39 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 40 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 41 H 0.37 7.33 5.76 -40.82 -0.24 7.09 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -36.35 374.86 -4.76 -41.11 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -4.93 Total: 14.69 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.95 Total: 12.61 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.07 Total: -62.67 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.35 -4.76 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714286036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.862 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds