Wall clock time and date at job start Wed Apr 1 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47159 * 2 1 4 4 C 1.52998 * 109.47051 * 119.99724 * 2 1 3 5 5 N 1.46497 * 109.47348 * 174.99994 * 4 2 1 6 6 C 1.34773 * 120.00047 * 180.02562 * 5 4 2 7 7 O 1.21607 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.47432 * 120.00055 * 180.02562 * 6 5 4 9 9 C 1.41289 * 126.41284 * 359.97438 * 8 6 5 10 10 N 1.30450 * 108.02134 * 179.72257 * 9 8 6 11 11 N 1.39934 * 108.89830 * 0.43636 * 10 9 8 12 12 C 1.46496 * 125.75688 * 179.81554 * 11 10 9 13 13 F 1.39905 * 109.47025 * 329.69234 * 12 11 10 14 14 F 1.39900 * 109.47180 * 209.69602 * 12 11 10 15 15 C 1.34262 * 108.48873 * 359.55252 * 11 10 9 16 16 N 1.46903 * 109.47088 * 239.99865 * 2 1 3 17 17 C 1.46897 * 110.99944 * 85.00430 * 16 2 1 18 18 C 1.50702 * 109.46842 * 179.97438 * 17 16 2 19 19 O 1.21288 * 119.99978 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99669 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99862 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99758 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00357 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00286 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99542 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47291 * 89.99485 * 25 23 21 27 27 H 1.48502 * 109.46954 * 209.99565 * 25 23 21 28 28 H 1.48500 * 109.47191 * 329.99239 * 25 23 21 29 29 H 1.09002 * 109.47149 * 300.00627 * 1 2 3 30 30 H 1.09005 * 109.46705 * 59.99963 * 1 2 3 31 31 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47075 * 54.99538 * 4 2 1 33 33 H 1.09002 * 109.47095 * 295.00418 * 4 2 1 34 34 H 0.97000 * 119.99798 * 359.97438 * 5 4 2 35 35 H 1.08004 * 125.98870 * 359.97438 * 9 8 6 36 36 H 1.09004 * 109.47223 * 89.69320 * 12 11 10 37 37 H 1.07997 * 126.29178 * 180.26352 * 15 11 10 38 38 H 1.00904 * 110.99933 * 321.04539 * 16 2 1 39 39 H 1.09001 * 109.46614 * 299.99745 * 17 16 2 40 40 H 1.08997 * 109.47581 * 59.99787 * 17 16 2 41 41 H 0.97002 * 120.00150 * 0.02562 * 20 18 17 42 42 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4291 2.1908 7 8 3.5681 -1.8853 3.1421 8 6 5.6423 -1.5344 2.1321 9 6 6.4769 -1.0545 1.0980 10 7 7.7115 -1.3331 1.4138 11 7 7.7250 -2.0036 2.6419 12 6 8.9183 -2.4905 3.3384 13 9 9.9002 -2.8283 2.4008 14 9 8.5883 -3.6198 4.0954 15 6 6.4603 -2.1204 3.0772 16 7 2.0197 -0.6925 -1.1994 17 6 2.0826 0.2225 -2.3469 18 6 2.5886 -0.5217 -3.5556 19 8 2.8697 -1.6984 -3.4696 20 7 2.7288 0.1205 -4.7324 21 6 3.1897 -0.5564 -5.8319 22 1 3.4400 -1.6042 -5.7553 23 6 3.3338 0.1054 -7.0452 24 7 3.7750 -0.5435 -8.0992 25 14 2.9002 1.9175 -7.1778 26 1 4.0998 2.7373 -6.8715 27 1 2.4357 2.2157 -8.5564 28 1 1.8202 2.2402 -6.2110 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 6.1502 -0.5428 0.2048 36 1 9.2984 -1.7097 3.9973 37 1 6.1415 -2.5869 3.9975 38 1 1.4496 -1.4980 -1.4100 39 1 1.0872 0.6162 -2.5525 40 1 2.7589 1.0461 -2.1182 41 1 2.5044 1.0617 -4.8011 42 1 3.8760 -0.0814 -8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714286036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:46 Heat of formation + Delta-G solvation = -109.009193 kcal Electronic energy + Delta-G solvation = -29222.020427 eV Core-core repulsion = 24487.988259 eV Total energy + Delta-G solvation = -4734.032168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.39354 -48.52393 -42.47458 -40.44409 -40.07591 -38.06031 -35.97506 -35.03021 -33.92840 -33.70334 -32.04971 -31.37227 -28.04709 -28.00508 -26.60544 -25.40439 -23.69101 -22.48612 -21.88806 -21.24358 -21.08768 -20.27038 -19.75756 -19.13944 -18.50231 -17.89941 -17.43757 -17.11342 -16.75592 -16.63126 -16.36736 -16.01393 -15.97927 -15.54538 -15.30091 -15.15255 -15.07837 -14.86978 -14.79078 -14.50014 -14.47563 -14.16304 -13.95424 -13.71378 -13.48447 -13.32893 -13.23711 -13.08628 -12.75780 -12.49137 -12.37925 -12.32515 -11.95994 -11.82199 -11.47334 -11.03357 -10.96198 -10.38457 -10.21059 -10.19163 -9.78021 -9.29569 -8.38322 -5.99027 0.23373 0.68854 1.01905 1.32273 1.38642 1.47061 2.02125 2.25885 2.30106 2.44045 2.52643 2.76024 2.88318 3.18813 3.45714 3.49784 3.54748 3.76231 3.92653 3.99608 4.13842 4.21872 4.26660 4.39697 4.51971 4.56053 4.63839 4.73976 4.87534 4.95554 5.06418 5.17646 5.32778 5.34909 5.55904 5.58120 5.94928 6.09670 6.23176 6.39207 6.63418 6.69467 6.92766 7.32982 7.44879 8.02605 8.79574 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.002409 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.993668 B =11622.692344 C =13805.899272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.108 0.892 4 C 0.136 3.864 5 N -0.700 5.700 6 C 0.592 3.408 7 O -0.591 6.591 8 C -0.295 4.295 9 C 0.101 3.899 10 N -0.303 5.303 11 N -0.433 5.433 12 C 0.505 3.495 13 F -0.187 7.187 14 F -0.182 7.182 15 C 0.149 3.851 16 N -0.678 5.678 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.938 5.938 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.228 1.228 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.413 0.587 35 H 0.215 0.785 36 H 0.214 0.786 37 H 0.215 0.785 38 H 0.345 0.655 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.390 0.610 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 8.391 26.886 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 H 0.126 0.874 4 C 0.011 3.989 5 N -0.350 5.350 6 C 0.380 3.620 7 O -0.474 6.474 8 C -0.309 4.309 9 C -0.088 4.088 10 N -0.121 5.121 11 N -0.222 5.222 12 C 0.374 3.626 13 F -0.168 7.168 14 F -0.164 7.164 15 C 0.001 3.999 16 N -0.311 5.311 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.579 5.579 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.151 1.151 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.231 0.769 36 H 0.230 0.770 37 H 0.232 0.768 38 H 0.164 0.836 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.226 0.774 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.048 7.340 27.276 28.535 hybrid contribution -1.516 0.166 -1.390 2.063 sum 2.532 7.506 25.887 27.072 Atomic orbital electron populations 1.22396 0.94925 1.02713 1.03643 1.21884 0.94309 0.98691 0.88346 0.87431 1.21395 0.79261 1.00535 0.97662 1.45554 1.08120 1.58488 1.22813 1.17308 0.85625 0.77063 0.82038 1.90740 1.70456 1.50911 1.35303 1.20415 0.94260 1.16451 0.99796 1.24646 0.88905 0.96324 0.98932 1.77324 1.22088 1.16474 0.96198 1.50092 1.07215 1.46260 1.18630 1.22257 0.74049 0.85643 0.80662 1.93118 1.61560 1.93552 1.68565 1.93144 1.92481 1.55771 1.74959 1.23282 0.82450 0.94413 0.99767 1.60156 1.58687 1.09169 1.03071 1.21693 1.02038 0.95396 0.87844 1.21097 0.82307 0.87938 0.84980 1.90568 1.55208 1.18815 1.85269 1.42037 1.60686 1.11893 1.08821 1.18983 1.42065 0.96033 0.88446 0.92892 1.26144 0.96528 1.05068 0.93894 1.69816 1.46608 1.39625 1.01854 0.85349 0.80267 0.76466 0.79311 1.18121 1.20472 1.15088 0.89948 0.91663 0.92695 0.93093 0.89981 0.75052 0.76888 0.77042 0.76800 0.83632 0.90502 0.85986 0.77449 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.16 71.98 0.66 -1.70 16 2 C 0.08 1.22 2.75 44.92 0.12 1.34 16 3 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16 4 C 0.14 2.54 5.37 86.38 0.46 3.01 16 5 N -0.70 -14.66 5.38 -466.37 -2.51 -17.17 16 6 C 0.59 14.69 7.81 86.67 0.68 15.37 16 7 O -0.59 -18.14 16.90 -4.05 -0.07 -18.21 16 8 C -0.29 -6.43 6.13 -20.15 -0.12 -6.55 16 9 C 0.10 2.14 11.50 85.65 0.99 3.13 16 10 N -0.30 -6.97 12.32 -56.27 -0.69 -7.67 16 11 N -0.43 -7.79 3.94 -363.02 -1.43 -9.23 16 12 C 0.51 5.70 6.62 127.77 0.85 6.54 16 13 F -0.19 -3.27 17.35 44.97 0.78 -2.49 16 14 F -0.18 -2.27 17.00 44.97 0.76 -1.51 16 15 C 0.15 2.71 10.84 84.27 0.91 3.63 16 16 N -0.68 -16.16 5.31 -495.58 -2.63 -18.80 16 17 C 0.06 1.57 5.97 85.56 0.51 2.08 16 18 C 0.45 18.65 7.82 87.66 0.69 19.34 16 19 O -0.61 -32.39 15.78 -3.05 -0.05 -32.44 16 20 N -0.59 -26.38 5.09 -306.98 -1.56 -27.94 16 21 C -0.33 -18.65 10.16 84.04 0.85 -17.80 16 22 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 24 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 25 Si 0.97 37.64 27.74 68.60 1.90 39.54 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.25 6.52 99.48 0.65 -6.61 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.85 7.45 -2.38 -0.02 0.84 16 31 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 7.93 7.09 -92.71 -0.66 7.27 16 35 H 0.21 3.59 7.50 -2.91 -0.02 3.56 16 36 H 0.21 0.10 8.14 -2.38 -0.02 0.09 16 37 H 0.22 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.34 9.61 8.17 -89.69 -0.73 8.88 16 39 H 0.08 1.55 7.44 -2.39 -0.02 1.53 16 40 H 0.12 2.33 8.05 -2.39 -0.02 2.31 16 41 H 0.39 14.11 5.76 -92.71 -0.53 13.57 16 42 H 0.28 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -86.34 374.86 0.99 -85.34 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.87 Total: 38.71 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 7.06 Total: 27.85 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -8.53 Total: -136.79 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.12 Total: -50.65 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.54 Total: -4.00 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.54 kcal Total: -86.34 0.99 -85.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714286036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.668 kcal (2) G-P(sol) polarization free energy of solvation -86.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds